SRS10931232 SAMN22857030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.22034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.298925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.109316 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931231 SAMN22857031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.730501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.13734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.703074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931230 SAMN22855062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.63647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.496008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.320877 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931229 SAMN22855063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.67335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.758112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.536469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931228 SAMN22855348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210313583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.557623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.184504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.3282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931227 SAMN22854481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210313582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.70407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.696474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.303422 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931215 SAMN22855945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210310110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.599546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.367071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.753439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931216 SAMN22855081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210310112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.549581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.505065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.5928135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931217 SAMN22856376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.894444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.6822195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.012866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931218 SAMN22856496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210313572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.703876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.307016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.31343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931219 SAMN22856667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.569327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.364833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.358191 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931220 SAMN22853952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210313575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.124105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.933438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.614285 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931221 SAMN22857035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.351578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.857965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.748289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931222 SAMN22856336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.603296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.388023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.420723 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931223 SAMN22855282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.914594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.597694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.873817 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931224 SAMN22855281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.280272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.322886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.421054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931225 SAMN22856335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.95483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.878767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.585883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931226 SAMN22854482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210313581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.58022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.809254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.343389 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931210 SAMN22856447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.35498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.928596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.720207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931211 SAMN22854957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210310099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.957819 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.106983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.560004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931212 SAMN22856446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.849287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.491539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.61564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931213 SAMN22854946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210310104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.19075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.174457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.703271 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931214 SAMN22855946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210310105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.362581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.454813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.68215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931233 SAMN22855280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.72572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.030762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.67079 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931234 SAMN22855279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.659525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.858941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.380088 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931235 SAMN22855931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210313601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.783887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.721195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.031636 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931236 SAMN22853859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.812382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.586388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.694044 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931237 SAMN22853858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313604/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.449986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.750949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.834025 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931238 SAMN22853857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.952402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.26926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.666306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931239 SAMN22854972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210313606/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.767046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.939459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.616047 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931240 SAMN22853706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210313607/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.846427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.231407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.783978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931241 SAMN22853705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210313608/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.513337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.939551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.079411 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931242 SAMN22855061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313609/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.104723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.27324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.826367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931243 SAMN22855060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313610/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.60599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.181883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.277777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931244 SAMN22855059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.498451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.45237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.852087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931245 SAMN22854514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210313612/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.7689295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.848735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.667285 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931246 SAMN22854513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210313613/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.794341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.306471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.427101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931247 SAMN22857029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.599663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.006575 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931248 SAMN22857028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313618/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.178905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.906136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.81759 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931249 SAMN22857027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.485573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.31818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.812037 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931250 SAMN22856636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.249813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.831963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.350527 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931264 SAMN22856962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.669601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.37917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.812614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931251 SAMN22856635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.772722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.046663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.957766 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931252 SAMN22855039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316164/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.123664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.830887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.675929 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931253 SAMN22855038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.95821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.014513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.714819 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931254 SAMN22855037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.189455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.260807 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.194448 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931255 SAMN22855036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.257471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.32897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.69869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931256 SAMN22855035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316169/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.877123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.038223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.287981 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931257 SAMN22855034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.372868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.541708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.510624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931258 SAMN22855033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.1412125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.731097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.873287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931259 SAMN22854914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210316173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.488659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.619291 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.665361 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931260 SAMN22855032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.920164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.641912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.101483 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931261 SAMN22854377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.510523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.466465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.385132 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931262 SAMN22854376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.657086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.397316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.913397 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931263 SAMN22855926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210316153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.108442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.670582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.86057 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931265 SAMN22853915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.01258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.836878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.328346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931266 SAMN22856634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.450918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.505235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.790813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931267 SAMN22856633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.344532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.79372 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.40968 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931268 SAMN22854375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.853855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.585192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.343888 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931269 SAMN22854374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316182/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.532993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.840537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.768125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931270 SAMN22856961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.582646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.299369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.427881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931271 SAMN22855031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.557732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.888834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.299655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931272 SAMN22855030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.597517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.363475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.70429 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931273 SAMN22854913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210316177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.515644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.262409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.820979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931274 SAMN22856960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316184/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.789774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.75758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.471804 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931275 SAMN22856959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316185/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.547217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.338621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.231936 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931276 SAMN22856958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.984261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.514403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.210327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931277 SAMN22856957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.321339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.713762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.11053 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931278 SAMN22856956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.475198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.291025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.126988 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931279 SAMN22856955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.591545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.312581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.957383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931280 SAMN22856954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.195272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.169638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.397814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931281 SAMN22856953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316191/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.431574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.52316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.676616 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931283 SAMN22855336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.238929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.4636755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.196731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931284 SAMN22854649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210338409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.47167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.856447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.427692 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931285 SAMN22856392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210338402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.51999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.622936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.728092 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931286 SAMN22856391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210338403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.683064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.697626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.031926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931287 SAMN22855340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.950069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.847559 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.313932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931288 SAMN22855334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.749618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.527483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.988959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931289 SAMN22855335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6012745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.369974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.479881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931290 SAMN22855333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.0009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.992536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.541632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931291 SAMN22855332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.566437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.153881 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.923035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931292 SAMN22855331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.831417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.805164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.242214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931293 SAMN22855833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210338427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.566046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.305042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.82807 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931294 SAMN22855831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210338430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.889568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.261229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.856142 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931295 SAMN22855832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210338429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.415632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.57034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.512909 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931296 SAMN22854899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.875376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.914532 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.801739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931297 SAMN22854898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Asian collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.585343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.576658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.286917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931298 SAMN22855330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.274434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.538751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.072752 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931299 SAMN22854897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.380821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.202456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.673014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931300 SAMN22856574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210338419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.683949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.324286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.234955 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931282 SAMN22855337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.902712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.475052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.44262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931301 SAMN22856886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.155184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.4634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.994069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931302 SAMN22856885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.772572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.416079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.106312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931303 SAMN22854731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.248604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.572145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.238308 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931304 SAMN22856884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.297599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.202813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.919024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931305 SAMN22854563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210338424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.859901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.59436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.414107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931306 SAMN22856075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210338426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.493107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.827724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.017747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931307 SAMN22854562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210338425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.775814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.331558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.611902 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931308 SAMN22854031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.882325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.759382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.22365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931309 SAMN22855830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210338431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.594625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.352251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.967993 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931310 SAMN22855201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.871084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.990326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.39396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931311 SAMN22855400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210338432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.695267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.849392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.235003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931312 SAMN22856420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.79708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.932729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.405348 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931313 SAMN22854965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210338438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.844767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.86103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.836021 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931314 SAMN22853740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.87248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.31614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.831505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931315 SAMN22856820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.798536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.858363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.572839 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931316 SAMN22856819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.188832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.185137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.700261 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931317 SAMN22856818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.489292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.266806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.106062 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931318 SAMN22855177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.622684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.827292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.532668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931319 SAMN22854959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210341273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.951128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.615335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.244408 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931320 SAMN22856821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.877777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.949589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.764404 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931321 SAMN22854641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210341247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.772197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.804459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931322 SAMN22854958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210341274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.132034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.598833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.262657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931323 SAMN22856457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210341275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.453062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.844437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.599216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931324 SAMN22857088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.758476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.286861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.723959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931325 SAMN22855324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210341254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.873394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.654324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.641186 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931326 SAMN22856196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.569637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.724049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.60476 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931327 SAMN22856039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210341280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.156578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.241388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.789236 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931328 SAMN22853984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341284/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.962132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.657494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.60186 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931329 SAMN22856817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.6752405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.348937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.241261 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931330 SAMN22855896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341285/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.56144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.70671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.257883 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931331 SAMN22856816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.06875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.494963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.034897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931332 SAMN22856815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.160688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.609335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.561822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931333 SAMN22856814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.667243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.947894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.296637 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931334 SAMN22853739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.362713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.626276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.457576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931335 SAMN22856813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.693744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.6796875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.21464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931336 SAMN22856812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.780048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.283176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.94034 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931337 SAMN22856811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.948248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.681339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.659583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931338 SAMN22853983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.224068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.984112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.729109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931339 SAMN22855447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210341387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.376643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.894836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.482746 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931340 SAMN22855446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210341388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.066294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.389965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.817068 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931341 SAMN22856810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.710396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.654157 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.966647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931342 SAMN22856809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.005434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.801306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.58806 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931343 SAMN22856808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.770215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.322663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.185472 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931344 SAMN22856806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.311089 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.599705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.795506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931345 SAMN22856807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.500587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.513147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.807314 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931346 SAMN22855439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210310079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.89668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.875132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.379217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931347 SAMN22854945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210310278/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.710638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.327549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.818926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931348 SAMN22855349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210310391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.730747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.50066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.583479 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931349 SAMN22854450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.500338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.721948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.595902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931350 SAMN22854449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.846657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.605951 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.022123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931351 SAMN22854448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.57628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.061102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.848995 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931352 SAMN22857246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.505867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.271191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.889081 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931353 SAMN22857244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.526232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.374574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.125817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931354 SAMN22857245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.209699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7500515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.407305 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931355 SAMN22856031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210310405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.962025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.685654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.418873 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931356 SAMN22857243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.704625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.948519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.122242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931357 SAMN22857073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.200593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.983175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.832133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931358 SAMN22857242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.691967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.944752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.562742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931359 SAMN22854447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.605364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.943022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.516153 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931360 SAMN22854446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.1591897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.877686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.207862 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931361 SAMN22854445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.231512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.300596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.772928 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931362 SAMN22854444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.23418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.209068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.831009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931363 SAMN22854443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.366832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.201741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.488956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931364 SAMN22854442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.69611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.280401 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.2322 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931365 SAMN22855352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210310113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.899433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.767729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.548208 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931366 SAMN22854441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.220597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.485914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.1895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931367 SAMN22855351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210310114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.321509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.884801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.489242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931368 SAMN22855350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210310115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.8841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.90119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.106762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931369 SAMN22855543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.58459 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.877657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.648733 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931370 SAMN22855317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210310437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.604874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.609823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.51563 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931371 SAMN22855542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.569077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.909439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.72817 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931372 SAMN22855316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210310439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.624924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.732346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.096988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931373 SAMN22855541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.706367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.270546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.614212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931374 SAMN22855540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.237368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.914782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.766705 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931375 SAMN22855539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.761616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.691597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.02358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931376 SAMN22853718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210310445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.809278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.300344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.544678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931377 SAMN22857241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.767447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.803574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.653682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931378 SAMN22854373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.213273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.166259 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.211967 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931380 SAMN22856948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.849568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.010032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.089111 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931381 SAMN22856947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.212143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.891692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.678325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931382 SAMN22856946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.87658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.889133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.777678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931383 SAMN22853914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.162308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.39605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.182178 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931384 SAMN22853913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.557128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.890355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.518487 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931385 SAMN22856952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.726818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.30718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.247463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931386 SAMN22854371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.434807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.912182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.462276 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931387 SAMN22856951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.483479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.782495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.11088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931388 SAMN22856950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.209708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.34871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.708654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931389 SAMN22856949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.040874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.380737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.816183 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931390 SAMN22854652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210316222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.890623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.917435 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931391 SAMN22857188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 94 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.35683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.68368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.046068 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931392 SAMN22856945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.96981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.858694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.67159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931393 SAMN22857258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210316205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.196342 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.410265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.896843 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931394 SAMN22854367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.612364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.148687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.107224 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931395 SAMN22856944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.202475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.630491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.537324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931396 SAMN22856943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.372166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.86077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.28468 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931379 SAMN22854372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.2359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.78408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.952148 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931397 SAMN22856942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.979544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.22544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.235586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931398 SAMN22856941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.49545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.939554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.909084 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931399 SAMN22856940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.284394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.032089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.222503 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931400 SAMN22856939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316218/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.428912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.775426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.787071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931401 SAMN22856938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.87537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.5837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.924303 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931402 SAMN22856937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.499336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.804678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.187391 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931403 SAMN22856484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.485636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.94666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.425686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931404 SAMN22854370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.167433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.685178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.882195 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931405 SAMN22854369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.57981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.97743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.858442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931406 SAMN22854368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.926794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.865112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.777838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931407 SAMN22857184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316233/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.563364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.012691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.309795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931408 SAMN22853912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.393476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.887825 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.271745 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931409 SAMN22853834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.183463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.837356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.187131 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931410 SAMN22855203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.646991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.786482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.894433 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931411 SAMN22854964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210338439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.060146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.689867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.678264 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931412 SAMN22855202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.471188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.819369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.152357 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931413 SAMN22854648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210338433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.76414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.13103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.929209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931414 SAMN22856573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210338435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.535557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.920856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.126902 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931415 SAMN22856421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.327831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.27582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.98583 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931416 SAMN22856744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.42242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.130774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.749151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931417 SAMN22857281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210338465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.225134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.606264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.212643 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931418 SAMN22857252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210338445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.848501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.515318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.551783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931419 SAMN22857280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210338466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.285666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.987194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.636251 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931420 SAMN22856419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338467/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.466324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.565176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.22863 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931421 SAMN22856418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.543402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.324728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.931625 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931422 SAMN22855354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210338469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.150182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.640636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.698474 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931423 SAMN22857143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.09153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.191075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.382339 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931424 SAMN22855619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.830538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.194326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.906338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931425 SAMN22857142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.206207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.976738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.159888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931426 SAMN22856390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210338448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.292439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.98745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.533724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931427 SAMN22855002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210338451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.309353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.81061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.513266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931428 SAMN22855000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210338453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.84287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.182125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.90474 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931429 SAMN22855001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210338452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.946389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.81039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.656674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931430 SAMN22856238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.720204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.995609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.618772 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931431 SAMN22854561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210338455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.43458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.470078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.1444 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931432 SAMN22855620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.75376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.495178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.372252 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931433 SAMN22855621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.287725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.35056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.396652 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931434 SAMN22855399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210338460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.495808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.80363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.565474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931435 SAMN22854314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.037647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.801029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.661821 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931436 SAMN22854310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.54176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.85959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.148472 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931437 SAMN22854309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.6369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.705544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.120136 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931438 SAMN22854308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.486565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.488495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.440866 lineage/clade name AY.23.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931439 SAMN22854307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.552073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.872743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.770001 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931440 SAMN22854030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.894179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.903108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.760895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931441 SAMN22853781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.640001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.77244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.970062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931442 SAMN22855538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.851418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.32635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.248795 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931443 SAMN22855970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210310447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.125124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.584319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.659877 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931444 SAMN22855537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.024115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.599297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.606947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931445 SAMN22853717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210310449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.367613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.598135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.866882 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931446 SAMN22853716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210310450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.022966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.616409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.101741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931447 SAMN22857240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.287748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.487478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.83126 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931448 SAMN22856694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.45259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.206087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.92204 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931449 SAMN22855536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.268108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.693245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.498589 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931450 SAMN22854202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.19865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.910975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.627338 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931451 SAMN22854203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.716015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.84005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.40703 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931452 SAMN22855969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210310458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.23054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.21543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.87343 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931453 SAMN22854618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.13961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.753262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.488684 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931454 SAMN22856789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210310434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.739564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.24663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.34814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931455 SAMN22856693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.675103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.879805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.296765 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931456 SAMN22853957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210310462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.920735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.164832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.015493 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931457 SAMN22853956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210310463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.693978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.533338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.874271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931458 SAMN22853955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210310464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.130985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.777163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.462824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931459 SAMN22857072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.747286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.36441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.44657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931460 SAMN22857071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.307844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.077347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.19477 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931461 SAMN22856507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210310467/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.764492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.641088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.573376 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931462 SAMN22856506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210310468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.602446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.191718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.14275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931463 SAMN22854617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.371817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.929728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.066229 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931464 SAMN22854616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.738758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.044048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.100239 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931465 SAMN22855094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210310471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.932518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.759233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.956827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931466 SAMN22855535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.198784 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.709341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.508104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931467 SAMN22855780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.191439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.599537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.10379 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931468 SAMN22855779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.73029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.489801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.783484 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931469 SAMN22855778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.203451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.67625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.295235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931470 SAMN22856375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.8549175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.639973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.763017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931471 SAMN22857070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.861204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.236176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.61113 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931472 SAMN22856505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210310509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.438107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.767689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.630095 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931473 SAMN22855777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.887832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.382206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.347055 lineage/clade name AY.38 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931474 SAMN22857026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313620/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.612137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.3274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.860823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931475 SAMN22857025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313621/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.5718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.707932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.548058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931476 SAMN22855347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210313622/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.809956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.79059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.37613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931477 SAMN22855346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210313623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.712341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.454967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.692188 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931478 SAMN22857024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.981121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.583382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.175365 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931479 SAMN22855345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210313624/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.763027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.732435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.96467 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931480 SAMN22856777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210313626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.611935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.501005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.655085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931481 SAMN22857023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313628/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.796545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.6727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.022987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931482 SAMN22855424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313655/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.377638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.099628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.578393 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931483 SAMN22855423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.64347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.414883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.181375 lineage/clade name AY.23.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931484 SAMN22857022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.34243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.729862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.831987 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931485 SAMN22857020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313631/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.021807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.614812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.233238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931486 SAMN22857021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313630/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.034485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.252651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.800436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931487 SAMN22853951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210313633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.413923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.449068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.353555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931488 SAMN22853950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210313634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.010168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.203062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.94859 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931489 SAMN22853949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210313635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.909565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.856178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.9889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931490 SAMN22854929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313636/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.949133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.29349 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.733162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931491 SAMN22856666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.984324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.153706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.714514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931492 SAMN22855430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313638/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.851001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.973749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.142243 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931493 SAMN22854850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313639/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.565704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.624418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.414917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931494 SAMN22854849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313641/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.542102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.669401 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.350123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931495 SAMN22854848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313642/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.325891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.716753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.6528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931496 SAMN22854847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.661139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.7169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.037727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931497 SAMN22854846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.275812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.891992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.561867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931498 SAMN22854845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313645/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.7050085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.893913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.67965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931499 SAMN22854844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313646/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.564713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.326658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.207487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931500 SAMN22853919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210313647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.26012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.917359 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.2844925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931501 SAMN22855429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313649/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.16467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.179978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.876619 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931502 SAMN22855428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.635078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.466066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.458225 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931503 SAMN22855427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313652/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.294233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.455564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.821064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931504 SAMN22854139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313651/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.15579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.767128 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.440556 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931505 SAMN22855426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8607025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.342284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.710379 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931506 SAMN22855251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316235/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.01167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.813794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.539831 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931507 SAMN22855250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.907829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.594128 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.504061 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931508 SAMN22855249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.885933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.56731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.324942 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931509 SAMN22855248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316238/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.518465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.238466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.704294 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931510 SAMN22855247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.99622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.283516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.458397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931511 SAMN22855246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316240/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.653491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.771041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.692206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931512 SAMN22855704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.541329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.903346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.730723 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931513 SAMN22855703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.866331 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.973654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.899315 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931514 SAMN22855702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.754714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.31582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.808943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931515 SAMN22855701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.794558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.39428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.740104 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931516 SAMN22856631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.357656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.796091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.49124 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931517 SAMN22853833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 34.159576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.919006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.206219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931518 SAMN22856632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.921951 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.510813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.781394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931519 SAMN22853832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.925466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.337802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.348917 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931520 SAMN22856630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.264841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.187569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.959543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931521 SAMN22856109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.523277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.600857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.935491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931522 SAMN22854806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316228/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.811035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.762726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.514385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931523 SAMN22857187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.979855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.110434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.697172 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931524 SAMN22857186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.16864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.61921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.599585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931525 SAMN22857185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.76718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.940569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.518019 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931526 SAMN22856627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.853405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.665333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.903843 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931527 SAMN22856626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.265556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.223719 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.140726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931528 SAMN22856625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.39501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.844679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.690584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931529 SAMN22857183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.140691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.013342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.408771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931530 SAMN22857182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316259/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.973107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.70302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.555513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931531 SAMN22857181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316260/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.346082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.375132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.289608 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931532 SAMN22857180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316261/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.253283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.754675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.464575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931533 SAMN22857179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316262/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.962888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.867113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.350339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931534 SAMN22856301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.665235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.415696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.738703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931535 SAMN22856300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.832628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.630892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.428118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931536 SAMN22856624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316267/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.96834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.336697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.22884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931537 SAMN22856299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316265/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.969898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.88335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.658972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931538 SAMN22855200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.742866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.795342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.001144 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931539 SAMN22855618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.879589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.617877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.693923 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931540 SAMN22854560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210338487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.25774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.628805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.59138 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931541 SAMN22853685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210338474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.259113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.450566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.923588 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931542 SAMN22854896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.723482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.960226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.579903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931543 SAMN22854895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338490/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.465396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.07289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.669224 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931544 SAMN22854647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210338492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.732556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.819162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.214396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931545 SAMN22854646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210338493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.942134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.053676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.750332 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931546 SAMN22854081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.739885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.808174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.1503 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931547 SAMN22855252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.235508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.488234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.939854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931548 SAMN22854819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.837921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.086189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.66057 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931549 SAMN22854818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.626211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.961223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.590007 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931550 SAMN22854816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8176985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.184814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.687832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931551 SAMN22854817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.76982 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.229174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.130348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931552 SAMN22854653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210315579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.295615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.639016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.909564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931553 SAMN22856974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.601555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.073754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.794056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931554 SAMN22857100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210340265/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.150115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.242108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.159342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931555 SAMN22857099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210340266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.580175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.341889 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.883667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931556 SAMN22856206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340267/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.56306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.708572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.871593 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931557 SAMN22857098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210340268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.648769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.6186905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.147342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931558 SAMN22855823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.242815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.356226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.18727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931559 SAMN22854885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210340271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.705977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.856524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.459916 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931560 SAMN22854268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.054761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.426805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.511604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931561 SAMN22855822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.185818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.49828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.214155 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931562 SAMN22856831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.577076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.412209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.624992 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931563 SAMN22856706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210340274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.781053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.537971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.757208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931564 SAMN22854267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.667326 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.38161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.423178 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931565 SAMN22854266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.25089 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.934711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.298742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931566 SAMN22854986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210340277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.82347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.39819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.55386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931567 SAMN22853995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.6619835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.630737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.336266 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931568 SAMN22854265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.132868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.453371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.942009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931569 SAMN22856460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210340281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.662363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.297987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.126131 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931570 SAMN22857101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210340260/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.863723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.287788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.168396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931571 SAMN22854550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210340300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source OP Swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device OP Swab collection_method OP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.842606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.280468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.231108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931572 SAMN22856542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340261/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.845632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.606097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.73841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931574 SAMN22854708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.880253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.763707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.547808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931575 SAMN22854707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.457968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.454953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.128506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931576 SAMN22854706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340304/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.218596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.341774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.958672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931577 SAMN22854705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340305/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.529363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.64672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.873026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931578 SAMN22854704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.4337225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.409361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.592558 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931579 SAMN22855581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340309/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.356489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.543455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.6149845 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931580 SAMN22855582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.750742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.976599 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.404955 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931581 SAMN22856726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210340310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.112677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.195389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.58965 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931582 SAMN22856828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.964003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.303549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.2668 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931583 SAMN22855794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210340312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.356617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.774082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.459393 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931584 SAMN22856725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210340313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.749598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.232597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.318718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931585 SAMN22856164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210308664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.925361 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.543082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.990703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931586 SAMN22854549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210340314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.769949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.94237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.717522 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931587 SAMN22855955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.40904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.971214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.695612 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931588 SAMN22856514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.671227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.46488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.55367 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931573 SAMN22853744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.463902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.125748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.184473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931589 SAMN22854536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210308668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.502073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.906538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.67935 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931590 SAMN22854535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210308669/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.381947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.379756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.287967 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931591 SAMN22856513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308670/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.98754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.87742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.673079 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931592 SAMN22854518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210308673/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.961319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.452995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.98855 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931593 SAMN22854227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.954258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.265205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.674244 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931594 SAMN22855954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308676/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.140398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.607467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.750163 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931595 SAMN22854534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210308678/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.71812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.985125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.185483 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931596 SAMN22856381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210308658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.921641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.896289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.89863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931597 SAMN22854228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.211716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.562591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.630804 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931598 SAMN22855869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210308661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.621734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.383118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.56033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931599 SAMN22854226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308680/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.652414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.742044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.296267 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931600 SAMN22854541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210308681/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.105999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.87779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.437948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931601 SAMN22854225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.719469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.952129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.684797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931602 SAMN22856449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210308683/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.981836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.762096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.59501 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931603 SAMN22856448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210308684/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.764167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.32687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.082744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931604 SAMN22854224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.567032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.578806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.344687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931605 SAMN22854517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210308687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.189205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.53105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.880327 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931606 SAMN22855784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210309111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source NP Swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.404852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.184264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.7942505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931607 SAMN22854223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.629099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.390968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.104664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931608 SAMN22854473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.199535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.705813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.955805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931609 SAMN22853720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210309139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.043478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.952772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.620808 lineage/clade name B.1.36.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931610 SAMN22853719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210309141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.122787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.225256 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.928072 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931611 SAMN22854621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210309128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.362564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.036491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.791435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931612 SAMN22854221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.336579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.447944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.850377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931613 SAMN22855084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210309690/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.83996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.345839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.897562 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931614 SAMN22856718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210309691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.946016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.298916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.845556 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931615 SAMN22854472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.535014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.591395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.285073 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931616 SAMN22854471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.192934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.511265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.732002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931617 SAMN22854470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309665/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.795543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.44408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.859358 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931618 SAMN22856491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210315582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.893965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.332996 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.752615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931619 SAMN22854918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210315583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.64032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.862946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.324057 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931620 SAMN22854815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.554226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.744959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.925265 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931621 SAMN22854480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210315585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.23383 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.826733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.779716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931622 SAMN22854080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.380921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.394096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.974999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931623 SAMN22854079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.655068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.586238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.328686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931624 SAMN22854078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.644527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.178577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.425413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931625 SAMN22854077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.210526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.664118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.36936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931626 SAMN22854076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.1906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.974507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.55831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931627 SAMN22855800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.421635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.873877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.786852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931628 SAMN22854583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.0842705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.78775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.9135895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931629 SAMN22855491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210315567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.665138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.586209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.658501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931630 SAMN22854812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.339088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.461548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.881925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931631 SAMN22854810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.901482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.974802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.732328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931632 SAMN22854811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.659494 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.871113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.681627 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931633 SAMN22856119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.578974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.56213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.425295 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931634 SAMN22854809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.60597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.209455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.383698 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931635 SAMN22854808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.275236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.750215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.651836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931636 SAMN22855490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210316013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.393692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.62665 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.210464 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931637 SAMN22853845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.354536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.666958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.282677 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931638 SAMN22853846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.167727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.492399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.616031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931639 SAMN22853844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316019/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.747122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.212125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.746541 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931640 SAMN22853843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.851187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.42567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.500673 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931641 SAMN22856011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316021/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.380589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.659975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.842468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931642 SAMN22854917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210316023/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.88596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.854685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.736582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931643 SAMN22856489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.227827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.985876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.977526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931644 SAMN22856490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316022/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.782455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.484962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.524658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931645 SAMN22854633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210316025/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.357195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.547436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.197163 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931646 SAMN22855416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210316027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.37492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.21851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.952715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931647 SAMN22854632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210316026/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.541475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.39018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.242054 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931648 SAMN22856044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210316029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.514566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.23756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.102142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931649 SAMN22855716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.265048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.863174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.801986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931650 SAMN22854539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210337954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.78495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.49092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.176704 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931651 SAMN22855003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.934929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.50886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.331512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931652 SAMN22854046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.571356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.688522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.90232 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931653 SAMN22854045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.837496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.026905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.9148 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931654 SAMN22855403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.32561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.719226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.301064 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931655 SAMN22855402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.975079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.311949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.17325 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931656 SAMN22854741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.919209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.205072 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.800868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931657 SAMN22854740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.50111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.566657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.487178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931658 SAMN22854739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.872673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.753777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.3436575 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931659 SAMN22855212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.56417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.67515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.190645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931660 SAMN22856248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.629414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.515821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.890012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931661 SAMN22856397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.632421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.870728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.793682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931662 SAMN22856078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.225857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.551628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.56361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931663 SAMN22855341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210337972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.216223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.024412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.73358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931664 SAMN22854966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210337971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.219728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.954341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.448973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931665 SAMN22856896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.714159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.957296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.100532 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931666 SAMN22856894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.572454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.375497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.528343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931667 SAMN22856895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.671154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.706483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.037588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931668 SAMN22856393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.450003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.675687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931669 SAMN22856893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.135504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.784558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.70043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931670 SAMN22856247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.421433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.553755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.164853 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931671 SAMN22856892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.855337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.633249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.562684 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931672 SAMN22857144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.217491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.335188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.674763 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931673 SAMN22856891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.181877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.854637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.781446 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931674 SAMN22855210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.600307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.853333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.619108 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931675 SAMN22855209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.9419155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.328209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.565307 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931676 SAMN22854738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337990/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.131104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.536032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.779625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931677 SAMN22854737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.479263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.613494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.638875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931678 SAMN22856576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.799553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.99287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.983429 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931679 SAMN22855211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.142397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.937223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.640196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931680 SAMN22854044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.706512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.792096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.026471 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931681 SAMN22855181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.305938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.723062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.440226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931682 SAMN22854043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.316958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.288637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.867614 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931683 SAMN22855580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340897/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.615719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.34395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.099009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931684 SAMN22856205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340900/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.228044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.757842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.616395 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931685 SAMN22856830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.169927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.44611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.410919 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931686 SAMN22854264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.156038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.954213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.592873 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931687 SAMN22854263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.597232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.940395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.906788 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931688 SAMN22856829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.605971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.526639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.511725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931689 SAMN22855182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.631917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.645491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.936055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931690 SAMN22856827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340905/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.606096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.319103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.490861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931691 SAMN22856826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340907/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.620909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.374105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.21908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931692 SAMN22855579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340908/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.822454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.31069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.788054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931693 SAMN22855578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340909/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.251717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.687782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.540799 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931694 SAMN22855577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340910/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.305992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.610047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.271579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931695 SAMN22855576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340911/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.629492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.799994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.460237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931696 SAMN22854703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340912/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.939478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.383376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.166611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931697 SAMN22853994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340913/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.479606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.6059065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5028925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931698 SAMN22856204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.241188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.877329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.163336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931699 SAMN22856701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210340916/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.58554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.580669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.181051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931700 SAMN22855902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210340917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.681154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.547998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.667913 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931701 SAMN22856824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340919/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.675848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.85506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.383936 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931702 SAMN22856825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340918/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.440337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.919113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.363334 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931703 SAMN22856823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340920/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.213987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.597147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.599152 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931704 SAMN22855901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210340921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.977894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.486957 lineage/clade name AY.39.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931705 SAMN22856539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340922/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.071525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.6019945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.536522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931706 SAMN22856203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340923/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8559265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.247369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.871634 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931707 SAMN22855180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340902/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.599533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.090778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.325562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931708 SAMN22855575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.875315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.381552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.488137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931709 SAMN22856459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210340925/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.321648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.301325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.027523 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931710 SAMN22855384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.717156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.213769 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.199854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931711 SAMN22856414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210340903/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.663355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.910631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.954313 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931712 SAMN22856540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340904/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.495281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.954092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.579576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931713 SAMN22855381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.499174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.964275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.478 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931714 SAMN22854469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.612892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.08867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.602966 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931715 SAMN22854467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.667238 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.294762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.46607 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931716 SAMN22854468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.06601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.201185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.133831 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931717 SAMN22854466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309669/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.754921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.231522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.23807 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931718 SAMN22854465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309670/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.465168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.418211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.88997 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931719 SAMN22854464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309671/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.676595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.64777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.493113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931720 SAMN22853959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210309676/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.563364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.314734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.313002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931721 SAMN22854460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309677/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.247358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.507196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.076181 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931722 SAMN22854459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309678/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.50138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.033722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.49119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931723 SAMN22854458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309679/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.732315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.58899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.499924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931724 SAMN22854620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210309681/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.181617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.989703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.810584 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931725 SAMN22854463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309672/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.349567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.3059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.887829 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931726 SAMN22854456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309683/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.858332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.618223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.643797 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931727 SAMN22854457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.309418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.473944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.214273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931728 SAMN22854222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.727665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.382824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.79897 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931729 SAMN22853958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210309685/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.844726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.303908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.732048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931730 SAMN22854979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210309688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.212229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.262148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.320486 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931731 SAMN22854461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309674/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.994535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.865595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.758282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931732 SAMN22855083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210309692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.439857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.662183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.25005 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931733 SAMN22854462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309673/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.828518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.876699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.378849 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931734 SAMN22857081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.889858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.491018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.023097 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931735 SAMN22856717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210309696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.950208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.788013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.78914 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931736 SAMN22856380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210309698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.454443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.809452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.345825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931737 SAMN22856163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210309699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.231477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.09227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.765403 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931738 SAMN22857080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309700/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.972261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.702417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.712927 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931739 SAMN22854220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.617188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.937975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.67668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931740 SAMN22857079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.778742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.967659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.733042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931741 SAMN22856162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210309703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.808408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.822526 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.996969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931742 SAMN22857078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.750639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.623089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.63883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931743 SAMN22856161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210309705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.696457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.227703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.318354 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931744 SAMN22856033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210309706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.27569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.750141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.277569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931745 SAMN22854219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.406206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.69674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.765482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931746 SAMN22856778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210313455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.615923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.572784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.212666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931747 SAMN22854148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.28422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.889181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.456312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931748 SAMN22856339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.573748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.882347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.239904 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931749 SAMN22855067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.20716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.660723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.37628 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931750 SAMN22855504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210313475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.572612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.450188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.404319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931751 SAMN22856402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210313456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.225073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.925451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.96722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931752 SAMN22855298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.249674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.507145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.089108 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931753 SAMN22855299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.089325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.477001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.847666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931754 SAMN22856434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210313457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.36321 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.081514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.663359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931755 SAMN22856499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210313478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.161429 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.78087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.239912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931756 SAMN22854415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.849098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.993901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.7094145 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931757 SAMN22854932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.567532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.798025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.251291 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931758 SAMN22856498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210313479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.239592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.938515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.620935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931759 SAMN22857283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210313483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.93968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.646006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.212321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931760 SAMN22854146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.930302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.94624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.527294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931761 SAMN22857282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210313485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.72231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.312342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.062382 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931762 SAMN22855857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.451952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.483217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.016434 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931763 SAMN22853707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210313487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.203432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.712648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.774101 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931764 SAMN22855858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313488/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.444914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.219038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.68032 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931765 SAMN22854145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.017456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.361341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.899033 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931766 SAMN22855856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.62578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.483894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.420471 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931767 SAMN22855765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.4164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.60155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.567741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931768 SAMN22855764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.0098095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.83511 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.221486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931769 SAMN22855088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210313498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.34625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.88141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.623709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931770 SAMN22855763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.549169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.388714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.663042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931771 SAMN22856497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210313499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.563258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.570539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.381042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931772 SAMN22855287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.441788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.647512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.593365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931773 SAMN22856432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210313501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.753143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.967083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.533057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931774 SAMN22854147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.324079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.583229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.171904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931775 SAMN22856668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.282515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.332964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.82432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931776 SAMN22855286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.254227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.960438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.808409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931777 SAMN22854814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.894503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.040455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.775276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931778 SAMN22854813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.654619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.956556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.73896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931779 SAMN22856500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210313477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.664955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.677648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.556539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931780 SAMN22855712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.12143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.379288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.205614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931781 SAMN22856488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.772842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.214365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.315777 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931782 SAMN22853842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.167526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.0148945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.825714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931783 SAMN22854582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.244535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.750109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.566374 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931784 SAMN22854581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.454185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.30341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.775093 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931785 SAMN22854580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.950409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.394452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.001541 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931786 SAMN22853841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.914198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.887768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.74487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931787 SAMN22854579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.37893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.911743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.517339 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931788 SAMN22856973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.196373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.039791 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.26427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931789 SAMN22855045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.745923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.940833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.563202 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931790 SAMN22855046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.428541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.75278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.303086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931791 SAMN22855044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316072/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.339907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.215642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.273749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931792 SAMN22856306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.059597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.504156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.177414 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931793 SAMN22856118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.261649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.979435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.888052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931794 SAMN22856117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.115572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.171846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.742981 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931795 SAMN22856116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.446115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.910199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.90187 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931796 SAMN22853840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.141435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.269378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.753836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931797 SAMN22855043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.952896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.812576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.515251 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931798 SAMN22853839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.917046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.165005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.756844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931799 SAMN22856487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.566477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.69004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.634945 lineage/clade name AY.23.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931800 SAMN22855715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.373919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.8293495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.707634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931801 SAMN22855714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.277485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.710466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.596771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931802 SAMN22855713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.404934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.61247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.3595 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931803 SAMN22855710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.784178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.608576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.673635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931804 SAMN22855711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.604137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.86687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.198648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931805 SAMN22855709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.1233435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.559109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.416422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931806 SAMN22855708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.90268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.744509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.505512 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931807 SAMN22855707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.586384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.271313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.649866 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931808 SAMN22855706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.828581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.455897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.580234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931809 SAMN22856763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210316089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.660772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.306442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.012495 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931810 SAMN22856897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.6118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.958284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.427036 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931811 SAMN22855988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210337943/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.95341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.428623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.435998 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931812 SAMN22855987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210337944/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.475486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.596978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.782977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931813 SAMN22854967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210337970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.385327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.332356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.686629 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931814 SAMN22853686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.151438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.340601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.28696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931815 SAMN22855966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210337996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.453304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.526339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.444235 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931816 SAMN22856246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.128727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.90647 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.81976 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931817 SAMN22855356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210337997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.223895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.980644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.141766 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931818 SAMN22855355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210337998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.482265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.688185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.615757 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931819 SAMN22855911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210338000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.893623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.468779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931820 SAMN22855632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.43166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.016438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.5265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931821 SAMN22856424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.570557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.992073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.013214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931822 SAMN22855834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210338007/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.845997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.8934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.27303 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931823 SAMN22853898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210338005/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.967768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.838938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.756413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931824 SAMN22854042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338010/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.956573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.043423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.93611 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931825 SAMN22854041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.890833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.492117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.34587 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931826 SAMN22857253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210338012/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.630447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.654278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.935552 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931827 SAMN22854040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.329016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.595913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.915424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931828 SAMN22856749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338014/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.564404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.009752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.916662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931829 SAMN22854039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.3559675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.195326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.914404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931830 SAMN22855631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338018/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.728247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.203552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.77771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931831 SAMN22856748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338015/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.663124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.665936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.680416 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931832 SAMN22856890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338019/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.79885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.485607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.231987 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931833 SAMN22856747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.340733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.361376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.910257 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931834 SAMN22856423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338021/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.185359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.4994755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.532249 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931835 SAMN22853688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.547483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.37271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.21657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931836 SAMN22854735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.629618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.272738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.480725 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931837 SAMN22853687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.79607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.257809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.944479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931838 SAMN22854734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338025/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.694683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.880768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.604034 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931839 SAMN22855630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338026/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.763369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.261511 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.653155 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931840 SAMN22856245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.044758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.270405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.418204 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931841 SAMN22853993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.185606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.13628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.943737 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931842 SAMN22853991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340935/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.615905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.555173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.209174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931843 SAMN22853992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340934/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.817173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.327003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.907698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931844 SAMN22853990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340937/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.250654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.28244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.544655 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931845 SAMN22856244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4263525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.681893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.175162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931846 SAMN22854952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210340939/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.557367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.778593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.370892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931847 SAMN22854951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210340940/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.515777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.669192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.428059 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931848 SAMN22853989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340942/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.54955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.853496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4949875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931849 SAMN22853988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340943/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.751118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.23651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.805012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931850 SAMN22854261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.371247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.856744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.406126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931851 SAMN22854262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340944/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.500849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.145811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.548964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931852 SAMN22854950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210340946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.504133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.293053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.800874 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931853 SAMN22854949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210340947/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.266444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.419932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.196997 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931854 SAMN22854948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210340948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.220989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.365167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.811251 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931855 SAMN22854947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210340949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.808722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.950491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.654641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931856 SAMN22854259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.60607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.899426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.621977 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931857 SAMN22854258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340952/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.724558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.698181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.431345 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931858 SAMN22854260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.8487015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.328251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.809513 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931859 SAMN22854257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340953/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.7589855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.486902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.342453 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931860 SAMN22854256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.737398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.454294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.237883 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931861 SAMN22855383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.736832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.763144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.533545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931862 SAMN22855382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340930/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.899365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.734776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.110923 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931863 SAMN22854251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.186919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.529491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.90733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931864 SAMN22854250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.239255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.218044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.201199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931865 SAMN22854252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.871693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.759013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.306229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931866 SAMN22856060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210340966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.350466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.591742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.110435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931867 SAMN22854702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.454226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.520891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.623517 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931868 SAMN22854701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.833663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.832533 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.88635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931869 SAMN22854700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.611794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.842138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.763552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931870 SAMN22857096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210340971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.528829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.221386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.727398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931871 SAMN22857097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210340970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.394117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.680075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.525349 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931872 SAMN22856385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210340972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.762735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.87153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.372985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931873 SAMN22856384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210340974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.262033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.58271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.443247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931874 SAMN22856379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210309708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.663567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.977002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.458027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931875 SAMN22854218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.412882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.609058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.472475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931876 SAMN22855323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210309716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.89669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.44942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.504471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931877 SAMN22854454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.75144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.27802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.857971 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931878 SAMN22854455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.631178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.416273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.447098 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931879 SAMN22854978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210309718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.891958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.446835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.306501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931880 SAMN22854453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.19154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.516984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.925978 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931881 SAMN22854452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.086699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.731535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.549368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931882 SAMN22854688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.780772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.403168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.763712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931883 SAMN22854687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.2682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.585398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.429611 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931884 SAMN22855173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.843133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.684696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.511484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931885 SAMN22855888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.709507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.617487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.482023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931886 SAMN22853734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.842125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.348465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.794983 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931887 SAMN22853733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.559443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.256504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.470175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931888 SAMN22855176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.01573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.3996935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.896527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931889 SAMN22853682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210341472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.020313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.404158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.651373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931890 SAMN22855091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210310561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.47523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.268023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.11173 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931891 SAMN22854875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.556103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.380232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.981818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931892 SAMN22854874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.448263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.713541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.94954 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931893 SAMN22857235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.341257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.110824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.621418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931894 SAMN22853954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210310567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.506292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.871073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.280929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931895 SAMN22854873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.73132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.32042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.28028 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931896 SAMN22856030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210310714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.547768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.387146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.154196 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931897 SAMN22856788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210310706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.74885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.80901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.492385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931898 SAMN22854190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.682467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.006253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.657741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931899 SAMN22855315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210310813/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.451868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.36167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.22461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931900 SAMN22854440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310814/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.496284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.988485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.273148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931901 SAMN22854615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310812/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.941898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.58942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.903816 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931902 SAMN22856372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310815/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.369084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.300937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.445178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931903 SAMN22854439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310816/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.77615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.720324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.970068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931904 SAMN22854438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310817/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.392708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.3211775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.233388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931905 SAMN22857068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.826073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.298986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.94364 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931906 SAMN22856406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210310708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.854984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.258177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.438102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931907 SAMN22857067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.260984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.892534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.72365 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931908 SAMN22856160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210310712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.38458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.495156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.971452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931909 SAMN22854614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310818/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.4294615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.314064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.816849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931910 SAMN22856503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210310713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.430225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.251123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.793787 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931911 SAMN22855776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310823/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.529137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.625858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.316502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931912 SAMN22854435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310824/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.426187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.564788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.293352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931913 SAMN22854437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310819/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.363554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.419939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.930962 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931914 SAMN22854189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310825/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.521385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.575651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.28717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931915 SAMN22856444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310826/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.797818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.562202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.92561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931916 SAMN22855129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210310828/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.988917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.635788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.797179 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931917 SAMN22857066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310829/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.998392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.565533 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.287546 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931918 SAMN22856691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310830/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.015554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.124569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.249277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931919 SAMN22856443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310831/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.7002735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.994208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.343343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931920 SAMN22856442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310832/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.64003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.87092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.657917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931921 SAMN22856441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310833/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.413629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.842965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.432753 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931922 SAMN22856142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.858276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.221083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.153877 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931923 SAMN22855755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.58856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.891751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.603229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931924 SAMN22857010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.311726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.22672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.768047 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931925 SAMN22854637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210313771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.007184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.617133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.603976 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931926 SAMN22854636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210313772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.99788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.79031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.928291 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931927 SAMN22857265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210313773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.18982 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.921406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.694132 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931928 SAMN22857264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210313774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.872665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.319208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.28792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931929 SAMN22855754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.720874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.235648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.763361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931930 SAMN22853704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210313776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.228848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.918231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.804847 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931931 SAMN22856013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.450149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.052437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.879029 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931932 SAMN22853703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210313778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.324892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.358316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.689007 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931933 SAMN22854838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.880916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.969558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.507192 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931934 SAMN22856141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.640257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.393911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.85809 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931935 SAMN22854411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.82855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.234192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.704304 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931936 SAMN22853947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210313782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.62981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.380542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.493978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931937 SAMN22857009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.764517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.980637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.231268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931938 SAMN22857222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314018/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.525408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.638384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.666961 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931939 SAMN22854130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.13849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.75053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.472414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931940 SAMN22856330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314019/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.103892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.816459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.051979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931941 SAMN22857221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.62695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.601964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.859815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931942 SAMN22857011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.20672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.374954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.892696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931943 SAMN22854839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.714108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.555805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.604298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931944 SAMN22857218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.83314 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.240195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.784431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931945 SAMN22856776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314025/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.744872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.18731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.810001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931946 SAMN22856328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.367662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.710194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.928753 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931947 SAMN22856327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.720406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.786251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.305386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931948 SAMN22855275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.459215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.155273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.39301 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931949 SAMN22854129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.903234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.91939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.812174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931950 SAMN22854128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.021772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.57405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.790142 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931951 SAMN22855274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.34092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.956074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.227781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931952 SAMN22856663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.479966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.247059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.708709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931953 SAMN22856326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.397427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.041307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.724522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931954 SAMN22854792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.928967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.87874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.302747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931956 SAMN22854791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.521263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.13583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.626484 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931957 SAMN22854366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316345/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.878179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.28348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.482316 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931958 SAMN22856936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316346/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.695576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.314286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.623624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931959 SAMN22856935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.562363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.121092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.169962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931960 SAMN22854365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316349/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.648595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.572712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.287791 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931961 SAMN22855028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.203474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.640705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.210543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931962 SAMN22855029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.57181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.125784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.920643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931963 SAMN22855027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.730648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.696903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.571444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931964 SAMN22855026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.529724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.653714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.175819 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931965 SAMN22856293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316327/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.990911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.455133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.233065 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931966 SAMN22854796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.336645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.252525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.38377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931967 SAMN22854795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.697673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.863541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.382277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931968 SAMN22856106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316356/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.372417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.28566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.950006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931969 SAMN22856105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.783484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.585966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.433445 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931970 SAMN22856104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.294512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.397394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.544788 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931971 SAMN22856103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.702388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.703362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.32099 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931972 SAMN22855696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316360/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.486097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.736433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.111907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931955 SAMN22854790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.265013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.545528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.945868 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931973 SAMN22855695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.992394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.55245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.945156 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931974 SAMN22855694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316362/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.956165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.638592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.942146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931975 SAMN22856102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316363/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.242348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.835882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.13513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931976 SAMN22855692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.351775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.235914 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931977 SAMN22855693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316364/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.90497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.984245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.639633 lineage/clade name B.1.575 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931978 SAMN22855691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.413435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.252317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.343687 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931979 SAMN22856292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316368/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.575562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.656925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.746805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931980 SAMN22855415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210316369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.847782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.447098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.30956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931981 SAMN22855414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210316370/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.817366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.660841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.311718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931982 SAMN22854789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.754731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.684804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.28611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931983 SAMN22856101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.680346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.835148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.432983 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931984 SAMN22854788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.213362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.529608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.23353 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931985 SAMN22855023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.902236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.391239 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.965952 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931986 SAMN22854522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210339103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.938543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.003046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.759169 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931987 SAMN22855397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.700986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.972938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.781015 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931988 SAMN22856572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.903395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.535377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.3211975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931989 SAMN22854726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.54525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.308464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.753712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931990 SAMN22856735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.080101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.43884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.89128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931991 SAMN22856229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.829218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.26745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.818722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931992 SAMN22856738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.45752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.66432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.25359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931993 SAMN22856736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.833251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.55665 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.894956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931994 SAMN22856737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.77383 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.179504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.45051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931995 SAMN22855396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.71672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.192085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.621832 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931996 SAMN22855395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.458624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.014542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.575943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931997 SAMN22855394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.409163 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.739873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.425928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931998 SAMN22855393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.257017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.368377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.587779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10931999 SAMN22856389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210339118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.225676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.785398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.691715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932000 SAMN22854725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.36216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.796797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.3488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932001 SAMN22855613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.43733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.474892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.838049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932002 SAMN22855101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210339137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.241253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.083426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.477195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932003 SAMN22855100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210339138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.376116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.744854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.491773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932004 SAMN22856734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.586209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.922595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.048453 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932005 SAMN22856227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.477163 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.759104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.291016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932006 SAMN22855981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.942008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.524503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.490551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932007 SAMN22855099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210339139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.151865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3273535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.904874 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932008 SAMN22855610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.134161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.228407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.882132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932009 SAMN22855609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.376045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.161779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.408225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932010 SAMN22856228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.36928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.385163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.956376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932011 SAMN22855392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.673683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.336132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.306082 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932012 SAMN22856464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210339127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.355743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.509201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.800638 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932013 SAMN22856878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.943633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.659947 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.1687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932014 SAMN22857133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.001841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.367246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.754788 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932015 SAMN22856877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.332382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.318758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.347282 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932016 SAMN22857132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.468468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.48005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.609343 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932017 SAMN22856571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.889614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.352215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.834545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932018 SAMN22853970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.893095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.69154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.675821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932019 SAMN22853971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341622/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.868033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.648188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.721714 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932020 SAMN22855567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.767506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.305314 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.68726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932021 SAMN22855165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.706987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.70204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.082108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932022 SAMN22853681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210341657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.902168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.474941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.919758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932023 SAMN22856524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.242071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.191257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.953465 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932024 SAMN22856705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210341661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.32452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.427027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.395999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932025 SAMN22854981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210341663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.610685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.36529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.071486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932026 SAMN22855565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341660/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.775928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.413754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.909748 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932027 SAMN22856038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210341662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.455004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.72175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.207975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932028 SAMN22854662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.76653 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.871582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.540428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932029 SAMN22855564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.285079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.745012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.398481 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932030 SAMN22855563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.377934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.773118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.394412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932031 SAMN22855562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.185663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.399212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.677351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932032 SAMN22855561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.172922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.503134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.31426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932033 SAMN22855560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.321109 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.392888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.574571 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932034 SAMN22855559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.944132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.170862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.621633 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932035 SAMN22855558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.64202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.770322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.684005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932036 SAMN22853965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.475656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.814048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.362758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932037 SAMN22856455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210341962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.148725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.591259 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.629857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932038 SAMN22856412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210341963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.528664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.692809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.55158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932039 SAMN22856185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.849064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.984322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.38153 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932040 SAMN22856525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.750551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.28194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.135416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932041 SAMN22856186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.220604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.7870035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.515464 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932042 SAMN22855817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210341652/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.138915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.483454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.330192 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932043 SAMN22856720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210341971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.966207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.313457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.510758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932044 SAMN22856721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210341970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.873745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.461393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.106043 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932045 SAMN22856182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.5233345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.431409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.594061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932046 SAMN22853897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.117265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.765987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.718242 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932047 SAMN22855164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.867048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.59115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.278152 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932048 SAMN22855444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210342583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.320197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5806675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.769016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932049 SAMN22855443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210342584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.720022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.970303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.608599 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932050 SAMN22855128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210310838/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.738754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.02818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.727713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932051 SAMN22856371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310839/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.877806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.831291 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.229683 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932052 SAMN22855775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310837/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.578054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.049468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.291818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932053 SAMN22856715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210310841/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.756912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.865786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.542822 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932054 SAMN22853879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210310840/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.709801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.296839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.313086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932055 SAMN22856440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310842/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.41508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.287115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.909792 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932056 SAMN22857234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310843/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.594328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.165432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.418518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932057 SAMN22857232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310846/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.518677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.256536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.264305 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932058 SAMN22857233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.316792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.319098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.72081 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932059 SAMN22856368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310855/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.1763315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.803829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.430849 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932060 SAMN22856029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210310847/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.212442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.91867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.935072 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932061 SAMN22854871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310856/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.385962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.07792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.995684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932062 SAMN22854188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310860/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.559082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.86243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.587072 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932063 SAMN22856047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210310863/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.27581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.777948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.923376 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932064 SAMN22855359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210310862/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.141308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.415821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.129768 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932065 SAMN22856028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210310864/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.841348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.665073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.532335 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932066 SAMN22856158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210310866/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.396559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.731907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.486504 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932067 SAMN22854974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210310865/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.80036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.5997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.87149 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932068 SAMN22856683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310867/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.650969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.629824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.111143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932069 SAMN22856370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310848/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.818402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.451284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.934224 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932070 SAMN22855865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210310850/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.9896145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.442412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.339098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932071 SAMN22855533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310852/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.483936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.143505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.861205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932072 SAMN22856369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310853/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.170204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.928807 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.590143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932073 SAMN22854613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310854/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.909684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.985917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.630271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932074 SAMN22855774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210310873/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.132814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.190557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.355476 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932075 SAMN22853877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210310874/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.096935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.049704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.522144 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932076 SAMN22854612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210310857/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.998415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.428553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.32368 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932077 SAMN22856690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310858/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.555248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.071271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.085061 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932078 SAMN22855864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210310859/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.771958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.290189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.62293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932079 SAMN22855532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310875/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.060846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.230513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.750914 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932080 SAMN22854944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210310876/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.258885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.537282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.728668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932081 SAMN22854872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310834/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.428951 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.11659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.554686 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932082 SAMN22854127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.682112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.326292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.164577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932083 SAMN22854126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.632915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.261164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.826176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932084 SAMN22856329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314021/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.270432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.42971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.303652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932085 SAMN22857220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314022/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.235151 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.336707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.950573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932086 SAMN22857219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314023/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.333328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.385319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.691086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932087 SAMN22854125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314037/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.88974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.557713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.427359 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932088 SAMN22854592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210314038/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.3183775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.20726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.749935 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932089 SAMN22856775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.242489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.453299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.180182 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932090 SAMN22854124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.510265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.2115 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932091 SAMN22856140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.779745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.320179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.839283 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932092 SAMN22855057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210314042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.152487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.345555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.210852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932093 SAMN22854837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.184612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.934628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.861931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932094 SAMN22854836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.41476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.544334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.896347 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932095 SAMN22854123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314048/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7261696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.531402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.371885 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932096 SAMN22855500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314050/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.356457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.881838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.345108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932097 SAMN22855499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314052/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.753117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.005188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.54092 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932098 SAMN22855056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210314045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.33894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.829605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.736086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932099 SAMN22857008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314046/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.81244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.545092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.596699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932100 SAMN22856774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.970424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.647137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.582472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932101 SAMN22856662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.633873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.450855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.847212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932102 SAMN22857006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.778913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.60987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.349482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932103 SAMN22857007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314053/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.22178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.90968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.387489 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932104 SAMN22855498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314054/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.919348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.566715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.323023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932105 SAMN22854122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314055/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.016668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.823353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.215916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932106 SAMN22854120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.347454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.368718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.667089 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932107 SAMN22854121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.25908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.203092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.622782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932108 SAMN22853854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314058/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.386444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.775783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.529758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932109 SAMN22854119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.778646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.137296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.83141 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932110 SAMN22855497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.338985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.484922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.414118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932111 SAMN22853853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.405565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.308733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.911795 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932112 SAMN22854116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.783741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.492839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.659885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932113 SAMN22856325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314169/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.01512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.528665 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.029881 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932114 SAMN22855022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316376/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.446545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.588238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.402784 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932115 SAMN22853911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.534737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.487936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.82598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932116 SAMN22855025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.674343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.259975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.586503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932117 SAMN22855024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.630363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.692721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.419512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932118 SAMN22855244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.87531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.47822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.311277 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932119 SAMN22855689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.590385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.90364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.742914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932120 SAMN22854502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.664122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.34972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.08998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932121 SAMN22855688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.254995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.126673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.346732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932122 SAMN22855687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.43357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.048548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.490925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932123 SAMN22855413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210316395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.482961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.903119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.19048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932124 SAMN22854577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.4485855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.339773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.0521965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932125 SAMN22854576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.379925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.669373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.620457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932126 SAMN22854575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.827083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.809709 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.163815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932127 SAMN22856934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.513304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.54775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.163305 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932128 SAMN22856291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.675097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.230783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.513933 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932129 SAMN22853909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.558034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.910402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932130 SAMN22856613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.765576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.841555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.616956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932131 SAMN22856614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.969184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.033579 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.294677 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932132 SAMN22856615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.321003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.94573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.664035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932133 SAMN22853910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.493689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.6863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.511799 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932134 SAMN22854503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.902013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.030199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.984165 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932135 SAMN22855690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.444993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.199827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.497749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932136 SAMN22856290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.670338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.311432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.232248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932137 SAMN22856612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.453013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.020319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.168187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932138 SAMN22856611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.534079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.026724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.535677 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932139 SAMN22855686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.947938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.402377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.806569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932140 SAMN22855685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.982069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.494896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.007061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932141 SAMN22855681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.955334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.67247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.630424 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932142 SAMN22855682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.67411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.390446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.257067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932143 SAMN22854787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.424567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.656428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.857305 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932144 SAMN22854364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.191158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.82192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.550196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932145 SAMN22854912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210316406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.543966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.405758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.669374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932146 SAMN22854995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.494585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.439186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.731481 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932147 SAMN22854018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.84561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.247316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.825203 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932148 SAMN22854016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.31326 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.991571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.045967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932149 SAMN22854015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.098576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.914459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.855184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932150 SAMN22854014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.053175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.70322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.40718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932151 SAMN22854013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.206467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.185538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.908366 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932152 SAMN22855607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.46339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.545492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.415232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932153 SAMN22854558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210339155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.30198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.828926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.897001 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932154 SAMN22857131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.772627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.270785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.300862 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932155 SAMN22854723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.636509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.39763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.684948 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932156 SAMN22854994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.764427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.529879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.469702 lineage/clade name B.1.617.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932157 SAMN22854722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.455164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.322956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.96867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932158 SAMN22854721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.385479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.87573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.556007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932159 SAMN22854720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.561575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.621946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.347816 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932160 SAMN22854719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.718124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.024371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.08999 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932161 SAMN22857273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210339165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.485462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.848335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.879185 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932162 SAMN22854724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.957117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.297209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.852318 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932163 SAMN22855608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.513831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.088485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.732596 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932164 SAMN22855606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.974203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.899731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.955883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932165 SAMN22856226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.547703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.433997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.011829 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932166 SAMN22856225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.693167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.026642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.856115 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932167 SAMN22856224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.947983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.37836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.057692 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932168 SAMN22854017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.327019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.971197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.26108 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932169 SAMN22855391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.264626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.556664 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.399178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932170 SAMN22855980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.77835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.495178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.701231 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932171 SAMN22855829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210339171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.357218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.155932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.146061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932172 SAMN22855979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.59268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.991217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.633648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932173 SAMN22854718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.831075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.667586 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.127598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932174 SAMN22854717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.350445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.551367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.727698 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932175 SAMN22854716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.947042 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.357525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.7014 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932176 SAMN22854715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.629449 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.607143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.280453 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932177 SAMN22855604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339180/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.593404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.598676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.761147 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932178 SAMN22854543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210341473/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.515564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.694992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.277262 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932179 SAMN22856456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210341474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.72759 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.926712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.626034 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932180 SAMN22853732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.593095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.356471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.080023 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932181 SAMN22854686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.970953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.176094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.828953 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932182 SAMN22854684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.265988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.177631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.321001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932183 SAMN22854685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.059072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.689986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.548494 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932184 SAMN22854671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.375725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.461316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.670477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932185 SAMN22854670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.966508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.319246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.694812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932186 SAMN22853731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.44325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.950905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.701073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932187 SAMN22854669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.537197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.75902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.133959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932188 SAMN22855171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.766666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.743189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.496069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932189 SAMN22855170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.24981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.794062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.42834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932190 SAMN22853977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.179419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.815487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.95698 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932191 SAMN22853976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.413256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.379593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.259045 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932192 SAMN22853975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.800533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.820837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.70498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932193 SAMN22856801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.63416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.70164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.601616 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932194 SAMN22855172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.940683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.418793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.811457 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932195 SAMN22854983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210341467/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.98898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.755852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.797823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932196 SAMN22855169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.50112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.899468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.839456 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932197 SAMN22854544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210341469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.85388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.555143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.607164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932198 SAMN22854545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210341468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.803528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.641037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.25428 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932199 SAMN22854244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.495384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.849682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.40067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932200 SAMN22855376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210341470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.90377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.473403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.4322195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932201 SAMN22854243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.415907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.046486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.502056 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932202 SAMN22856530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341600/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.988703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.16368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.820826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932203 SAMN22854242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.079652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.787747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.18823 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932204 SAMN22854668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341602/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.725397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.37617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.544561 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932205 SAMN22855375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210341603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.198133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.304436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.606728 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932206 SAMN22854241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341604/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.394249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.312216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.182867 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932207 SAMN22854667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.928281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.35503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.614028 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932208 SAMN22854666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341606/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.406549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.645261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.0465145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932209 SAMN22854240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341607/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.743493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.320423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.04954 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932210 SAMN22856288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.325453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.510319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.824924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932211 SAMN22856287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.939817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.117585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.449566 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932212 SAMN22856610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.150393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.713173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.767292 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932213 SAMN22855680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.670027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.861467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.874975 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932214 SAMN22855678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.339657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.37326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.947575 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932215 SAMN22855679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.523634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.832843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.004015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932216 SAMN22855677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.3281555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.41055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.6345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932217 SAMN22855675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.997015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.839394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.70704 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932218 SAMN22855676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.847642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.536434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.221947 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932219 SAMN22853821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.679493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.814808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.040886 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932220 SAMN22853820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.046561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.222712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.588598 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932221 SAMN22853819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.315214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.63643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.885113 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932222 SAMN22855999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.396344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.236739 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.098253 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932223 SAMN22855998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.597824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.349843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.328065 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932224 SAMN22856100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.213646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.892077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.403517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932225 SAMN22856099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.342207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.198944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.677008 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932226 SAMN22856289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.624577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.36326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.393572 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932227 SAMN22854786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.5633717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 7.684933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 6.990174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932228 SAMN22854784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.431663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.484587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.494467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932229 SAMN22854785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.073635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.286873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.864822 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932230 SAMN22854783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.301609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.7725725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.982706 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932231 SAMN22854782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.787653 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.262563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.042146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932232 SAMN22856608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.259123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.314717 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.740245 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932233 SAMN22855243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.983538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.316886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.726348 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932234 SAMN22856483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.950403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.389797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.09153 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932235 SAMN22856609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.513166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.693781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.777005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932236 SAMN22854074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210316435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.517618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.824186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.899279 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932237 SAMN22855799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210316439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.196341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.284046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.759743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932238 SAMN22855242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.35334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.96311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.485018 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932239 SAMN22855241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.321644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.75359 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.934711 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932240 SAMN22855240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.718458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.605684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.219961 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932241 SAMN22855239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.319765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.757828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.857962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932242 SAMN22853775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.53646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.525173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.382557 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932243 SAMN22855329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210339183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.675113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.176465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.443878 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932244 SAMN22853774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339182/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.253841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.28194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.122105 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932245 SAMN22855328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210339184/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.306984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.035168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.905388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932246 SAMN22855327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210339185/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.792194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.55409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.106602 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932247 SAMN22855326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210339186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.289031 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.858579 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.819848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932248 SAMN22853941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.861233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.015749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.323725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932249 SAMN22855605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.75191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2790785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.803288 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932250 SAMN22853940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.949862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.408623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.467527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932251 SAMN22853939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.425836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.753689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.250056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932252 SAMN22856223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339168/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.771049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.542776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.883961 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932253 SAMN22853938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.950893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.087196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.036432 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932254 SAMN22853776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.861471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.981872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.435887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932255 SAMN22855196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.833609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.261656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.313887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932256 SAMN22854713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.037933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.573278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.730595 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932257 SAMN22855195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.886803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.341066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.98719 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932258 SAMN22854712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.555151 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.194836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.473972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932259 SAMN22856222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.597761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.136435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.705263 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932260 SAMN22853773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.085114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.846228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.681433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932261 SAMN22856876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.698317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.97777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.874664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932262 SAMN22856875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.354148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.427119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.080552 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932263 SAMN22855098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210339202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.992844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.057045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.86475 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932264 SAMN22856874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.358597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.844167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.516914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932265 SAMN22854557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210339207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.969393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.661818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.03779 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932266 SAMN22854556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210339208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.299328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.685347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.139665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932267 SAMN22854555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210339209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.622707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.741411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.157906 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932268 SAMN22854554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210339210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.290876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.572154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.254071 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932269 SAMN22856873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.429424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.850006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.748959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932270 SAMN22856872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.991634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.6561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.786983 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932271 SAMN22855466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.180979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.924793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.6135645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932272 SAMN22853772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.053241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.29624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.61755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932273 SAMN22855465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.515648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.752926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.423536 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932274 SAMN22854239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341608/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.635872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.40013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.909914 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932275 SAMN22854665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341609/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.2263365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.71988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.330446 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932276 SAMN22854664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.359894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.271389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.882607 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932277 SAMN22855168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341614/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.333815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.219288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.745455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932278 SAMN22856723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210341615/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.577621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.562792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.7143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932279 SAMN22854237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.569762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.687143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.289043 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932280 SAMN22854238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341616/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.023695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.97179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.963806 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932281 SAMN22853974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.646917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.777613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.223064 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932282 SAMN22853973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341620/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.651782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.501497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.883775 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932283 SAMN22853972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341621/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.42622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.472494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.204777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932284 SAMN22854245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.613749 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.884205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.986889 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932285 SAMN22854246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.234823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.603828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.45208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932286 SAMN22855566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.217803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.547448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.944682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932287 SAMN22857087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341628/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.174402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.438383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.177702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932288 SAMN22854982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210341630/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.537394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.40838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.288506 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932289 SAMN22857086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.171415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.20795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.786863 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932290 SAMN22857085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341632/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.949192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.327585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.199922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932291 SAMN22853969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341631/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.839363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.754705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.396975 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932292 SAMN22853968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.56827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.721445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.583122 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932293 SAMN22853967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.312975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.548206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.596405 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932294 SAMN22855167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.058334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.950802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.803545 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932295 SAMN22855166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341636/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.763763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.688018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.260828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932296 SAMN22853966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.808767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.635715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.653584 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932297 SAMN22854663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341638/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.2159195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.374035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.880863 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932298 SAMN22855887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341639/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.080583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.435298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.861329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932299 SAMN22856529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341641/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.77683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.01866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.858094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932300 SAMN22855886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341642/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.598955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.694454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.621547 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932301 SAMN22854520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210341643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.557512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.544369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.3503 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932302 SAMN22856528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341645/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.860323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.494096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.373589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932303 SAMN22856527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341646/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.720466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.142909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.52765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932304 SAMN22853930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210341647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.604675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.612453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.18313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932305 SAMN22856526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341649/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.36656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.888692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.906897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932306 SAMN22856523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210342586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.485064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.551209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.170612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932307 SAMN22855442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210342585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.40731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.205397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.875603 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932308 SAMN22854640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210342587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.840012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.556568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.529316 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932309 SAMN22856037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210342588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.809364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.823876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.718765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932310 SAMN22856036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210342589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.098598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.184912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.227724 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932311 SAMN22855158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342613/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.990618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.8199625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.760423 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932312 SAMN22855157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342614/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.403322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.804417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.145842 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932313 SAMN22856035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210342590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.689284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.849857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.797303 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932314 SAMN22853964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210342591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.864081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.709116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.740523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932315 SAMN22853895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.871626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.656828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.40959 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932316 SAMN22853894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.018108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.951185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.715765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932317 SAMN22853680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210342595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.86346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.587408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.789352 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932318 SAMN22853679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210342597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.402056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.39017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.54805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932319 SAMN22853893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.61636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.609537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.26577 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932320 SAMN22856184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.588861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.874565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.317423 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932321 SAMN22856183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.719957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.295841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.73392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932322 SAMN22856722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210341969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.116406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.927433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.802382 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932323 SAMN22853678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210342601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.085028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.118423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.838568 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932324 SAMN22855885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342602/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.585863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.058237 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.87395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932325 SAMN22853896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.234597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.346753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.979223 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932326 SAMN22854490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.311507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.733727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.156851 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932327 SAMN22854489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.498943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.16627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.594016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932328 SAMN22854488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342606/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.542419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.803842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.483391 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932329 SAMN22855163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342607/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.929605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.632471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.436893 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932330 SAMN22855162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342608/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.3552966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.96187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.5605345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932331 SAMN22855161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342609/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.724093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.776012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.951079 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932332 SAMN22855160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342610/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.422693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.939667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.237089 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932333 SAMN22855159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.328768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.788826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.661256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932334 SAMN22853890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342612/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.007719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.894373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.848976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932335 SAMN22855156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342615/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.212362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.891329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.783192 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932336 SAMN22855154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.99973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.153337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.410892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932337 SAMN22855155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342616/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.593454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.304203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.551355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932338 SAMN22856716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210310835/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.162778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.194013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.800363 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932339 SAMN22856159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210310836/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.579964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.69074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.013812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932340 SAMN22857065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310878/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.105076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.776278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.244057 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932341 SAMN22857231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310877/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.426076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.716975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.448597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932342 SAMN22855127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210310880/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.577135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.435928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.700999 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932343 SAMN22856027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210310881/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.12803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.509203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.346388 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932344 SAMN22854870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310869/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.299051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.274836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.291758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932345 SAMN22856682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310871/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.198166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.24734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.507622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932346 SAMN22856367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310868/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.117964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.259575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.221737 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932347 SAMN22853878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210310870/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.221817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.608226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.736662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932348 SAMN22854187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310872/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.335671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.710427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.483618 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932349 SAMN22855530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310895/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.801084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.454142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.612075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932350 SAMN22855528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310897/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.814278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.412728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.729499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932351 SAMN22855529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310896/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.019407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.541904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.312342 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932352 SAMN22856365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310902/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source NP Swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.635199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.902958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.673378 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932353 SAMN22854639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210310901/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.54671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.320154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.158349 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932354 SAMN22856364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310903/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source NP Swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.136784 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.18618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8057575 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932355 SAMN22856363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310904/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source NP Swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.976614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.881059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.631037 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932356 SAMN22856362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310905/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source NP Swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.5875716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.009217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.792696 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932357 SAMN22855527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310908/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.726723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.823375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.55027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932358 SAMN22855526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310909/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.538778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.881468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.642075 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932359 SAMN22855525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310910/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.919442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.512535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.968493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932360 SAMN22854973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210310906/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.96789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.304308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.837145 lineage/clade name AY.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932361 SAMN22855524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310911/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9176445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.112894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.565426 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932362 SAMN22855523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310912/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.223841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.580424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.47874 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932363 SAMN22855522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310913/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.155677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.433834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932364 SAMN22857063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.175325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.234316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.155186 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932365 SAMN22857064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.261406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.639789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.506783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932366 SAMN22854869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210310882/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.665668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.643013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.34252 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932367 SAMN22854186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.91172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.026546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.90888 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932368 SAMN22856361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.656373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.116778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.598457 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932369 SAMN22855531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310883/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.717902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.3935795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.934673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932370 SAMN22856324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.58649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.895925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.677503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932371 SAMN22856323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.798496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.778397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.959826 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932372 SAMN22855752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.23144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.842712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.696798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932373 SAMN22855751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.9542465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.953736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.8766985 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932374 SAMN22855750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.734959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.987652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.839515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932375 SAMN22855749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.937267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.668491 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.436102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932376 SAMN22855753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.934678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.881785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.183533 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932377 SAMN22854118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.174896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.751608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.321728 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932378 SAMN22855748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.390427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.812315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.711745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932379 SAMN22854117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.930972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.1737175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.581574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932380 SAMN22855747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.325779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.521929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.974983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932381 SAMN22855746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314184/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.224897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.839848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.974317 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932382 SAMN22857217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314182/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.127256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.022903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.431864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932383 SAMN22855745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314185/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.852724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.87157 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.207692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932384 SAMN22854657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210314186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.265259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.44868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.10798 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932385 SAMN22854115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.898134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.69809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.15028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932386 SAMN22856661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.626606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.573607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.873562 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932387 SAMN22856660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.910519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.297115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.503845 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932388 SAMN22854512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210314189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.90064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.35566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.993901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932389 SAMN22856322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314191/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.148063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.758415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.980894 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932390 SAMN22855851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.791374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.755154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.708633 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932391 SAMN22856659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.510284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.577015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.580903 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932392 SAMN22855055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210314195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.610388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.532265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.421741 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932393 SAMN22855273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.993295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.582921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.442709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932394 SAMN22856658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.880993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.316162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.915062 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932395 SAMN22855272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.444946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.84451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.556791 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932396 SAMN22855271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.64127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.337458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.11025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932397 SAMN22857216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.779062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.283089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.246921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932398 SAMN22857215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.237878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.281162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.454373 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932399 SAMN22857212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.308044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.589985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.715954 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932400 SAMN22857213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.474241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.674734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.119926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932401 SAMN22855238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.716606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.618417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.123845 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932402 SAMN22857214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.976092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.720087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.182164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932403 SAMN22855237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.232871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.674465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.722947 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932404 SAMN22856286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.69527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.901506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.201227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932405 SAMN22856284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.5823345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.558287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.200924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932406 SAMN22856285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.215625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.522411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.226994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932407 SAMN22855997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.821313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.368641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.252413 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932408 SAMN22855995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.44122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.369465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.313143 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932409 SAMN22855996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.679287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.0627 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932410 SAMN22854781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.918135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.248156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.651923 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932411 SAMN22854363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.78999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.879226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.955284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932412 SAMN22853813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.23882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.694186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.832239 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932413 SAMN22853812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.755762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.60562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.474686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932414 SAMN22853818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.777473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.570129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.509542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932415 SAMN22855021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.97097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.505779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.804206 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932416 SAMN22856607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.598225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.556161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.133879 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932417 SAMN22853817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.798399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.34522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.960386 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932418 SAMN22853816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.341824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.318537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.154204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932419 SAMN22853815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.63748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.576784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.275179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932420 SAMN22853814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.21323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.446724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.977945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932421 SAMN22854362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.588573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.043518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.257706 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932422 SAMN22853811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.89005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.792676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.309753 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932423 SAMN22856605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.74808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.671747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.278713 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932424 SAMN22856604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.169863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.972515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.963354 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932425 SAMN22854361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.83066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.71595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.947487 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932426 SAMN22856603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.55516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.144037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.61184 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932427 SAMN22853700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210316480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.21525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.455817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.265122 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932428 SAMN22854360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.504313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.384861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.241344 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932429 SAMN22853699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210316481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.383302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.280921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.492719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932430 SAMN22853908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.243302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.826022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.971376 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932431 SAMN22855672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.635984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.790113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.849537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932432 SAMN22855674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.929413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.644743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.319052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932433 SAMN22855464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.346195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.284845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.689005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932434 SAMN22854012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.8917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.493835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.72175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932435 SAMN22855603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.680548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.618407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.375228 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932436 SAMN22856606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.09146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.335014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.743206 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932437 SAMN22855194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.13958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.173048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.78584 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932438 SAMN22854714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.85315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.39724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.430073 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932439 SAMN22856871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.279524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5174465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.27387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932440 SAMN22853771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.902588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.3985615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.980324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932441 SAMN22853770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.185394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.992144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.36807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932442 SAMN22856870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.50325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.608604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.263462 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932443 SAMN22856221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.16669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.887575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.541145 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932444 SAMN22853769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339228/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.378796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.879795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.26672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932445 SAMN22856869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.3726635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5468855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.512651 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932446 SAMN22856867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.255692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.671223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.522045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932447 SAMN22856868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.723691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.133055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8639345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932448 SAMN22856866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339235/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.44742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.571901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.666752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932449 SAMN22855910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339238/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.922575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.042782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.513813 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932450 SAMN22856863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.746657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.822107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.102938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932451 SAMN22855909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339241/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.57711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.679756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.642447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932452 SAMN22856862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8960085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.459383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.757907 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932453 SAMN22854963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210339219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.522171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.255663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.310972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932454 SAMN22854962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210339220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.308203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.46332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.84659 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932455 SAMN22856861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.884651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.288012 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932456 SAMN22854961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210339221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.817914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.40989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.339201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932457 SAMN22856070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339251/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.260511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.313892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.218357 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932458 SAMN22855599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339252/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.776196 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.143574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.567743 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932459 SAMN22855598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.79499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.294195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.1915655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932460 SAMN22855597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339255/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.653708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.763006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.43041 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932461 SAMN22855596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.174505 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.16201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.961522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932462 SAMN22854011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339257/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.782524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.485586 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.220009 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932463 SAMN22854010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.598843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.244275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.476725 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932464 SAMN22854629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210339259/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.799181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.518162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.491322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932465 SAMN22854628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210339260/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.091537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.534115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.8092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932466 SAMN22855153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342618/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.761423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.439964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.600979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932467 SAMN22855152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.772331 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.938623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.548342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932468 SAMN22854487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342620/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.503208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.97714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.40398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932469 SAMN22855151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342621/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.687938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.420902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.196063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932470 SAMN22855150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342622/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.592152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.535488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.750168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932471 SAMN22854486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.287107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.25126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.77191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932472 SAMN22854485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.583537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.237793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.728619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932473 SAMN22853892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.934109 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.300983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.82989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932474 SAMN22853891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210342600/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.777567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.444626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.285213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932475 SAMN22854484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210342629/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.455391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.628496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.080521 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932476 SAMN22856181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210342988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.66838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.17363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.329502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932477 SAMN22856180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210342989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.592644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.274035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.978249 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932478 SAMN22856178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210342992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.98403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.756842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.383833 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932479 SAMN22856179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210342990/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.906409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.447452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.600043 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932480 SAMN22855884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.829561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.894505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.459969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932481 SAMN22855883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.622463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.66003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.653965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932482 SAMN22855882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.563692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.177708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.749514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932483 SAMN22855881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.765497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.723959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.50075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932484 SAMN22855880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.883892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.03524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.131102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932485 SAMN22855147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342628/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.295681 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.703497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.516222 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932486 SAMN22855879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.638021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.56198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.751368 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932487 SAMN22855878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210342999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.878574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.700357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.498386 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932488 SAMN22855877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210343000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.738838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.666182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.51018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932489 SAMN22856177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.698263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.834782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.650126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932490 SAMN22855876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210343001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.39905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.228027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.513712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932491 SAMN22856176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343003/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.6941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.579114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.76045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932492 SAMN22856175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343004/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.552238 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.920389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.880145 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932493 SAMN22855149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342626/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.28309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.23234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.482622 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932494 SAMN22855148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210342627/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.424623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.909374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.368634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932495 SAMN22853730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343010/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.298845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.309024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.238536 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932496 SAMN22853729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.723398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.994148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.033575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932497 SAMN22856366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310884/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.465345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.743536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.412868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932498 SAMN22856360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.871506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.412677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.010494 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932499 SAMN22856173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343012/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.5128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.462383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.32702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932500 SAMN22856359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.21155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.559277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.629461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932501 SAMN22855520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.132452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.977364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.884642 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932502 SAMN22855080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.160402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.721968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.684374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932503 SAMN22855944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210311116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.981318 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.310505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.755194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932504 SAMN22856714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210311114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.96727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.730255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.650295 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932505 SAMN22857062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.783978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.16595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.621382 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932506 SAMN22857268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210311120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.220785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.129979 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.206617 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932507 SAMN22856787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.487476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.20304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.821138 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932508 SAMN22854433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.465282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.13763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.938641 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932509 SAMN22854184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.79023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.467459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.488585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932510 SAMN22855519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.625593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.357332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.918127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932511 SAMN22854183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.580691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.742446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.965494 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932512 SAMN22855518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.446371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.00525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.614376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932513 SAMN22856358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.955263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.959238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.705814 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932514 SAMN22857061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.697466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.793858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.378925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932515 SAMN22857060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.3785095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.891437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.359416 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932516 SAMN22856357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.045921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.668646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.496593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932517 SAMN22855079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.220234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.012615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.318005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932518 SAMN22854434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.831392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.139822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.61198 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932519 SAMN22855521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.94856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.776617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.815228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932520 SAMN22854185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.411674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.956194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.789211 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932521 SAMN22854182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.285065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.948029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.009953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932522 SAMN22855517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.583294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.819176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.363413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932523 SAMN22856026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210311137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.6807995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.806258 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.254054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932524 SAMN22854432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.145796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.399506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.203505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932525 SAMN22855516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.257132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.937878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.706903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932526 SAMN22855943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210311140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.811728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.733136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.188459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932527 SAMN22856356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.360131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.474159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.514573 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932528 SAMN22855314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.266685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.222593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.490331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932529 SAMN22856657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.880617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.466969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.202528 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932530 SAMN22854922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210314210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.499395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.635004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.755253 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932531 SAMN22853852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.94287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.718596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.826466 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932532 SAMN22855124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210314211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.477177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.654503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.36344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932533 SAMN22857210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.198694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.482655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.804983 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932534 SAMN22857211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.483887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.505964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.091328 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932535 SAMN22854868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.987643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.734919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.235159 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932536 SAMN22857208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.904806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.64969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.597647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932537 SAMN22857209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.824095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.965723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.147923 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932538 SAMN22856321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.961544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.553606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.722298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932539 SAMN22856139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.892637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.324657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.356441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932540 SAMN22857005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.205568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.931013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.349665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932541 SAMN22854114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314218/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.531256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.710232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8799715 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932542 SAMN22856773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.376758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.733885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.763892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932543 SAMN22853851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.778551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.836725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.924128 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932544 SAMN22857004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.88764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.755183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.84063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932545 SAMN22856772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314223/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.18578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.567968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.674813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932546 SAMN22853849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.44546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.3194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.34427 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932547 SAMN22856320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314230/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.398874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.149567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.686233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932548 SAMN22853848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.800987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.404802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.735716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932549 SAMN22853850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210314226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.334372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.771057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.494864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932550 SAMN22857207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314231/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.364829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.645786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.53987 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932551 SAMN22856430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210314208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.267814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.237616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.90348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932552 SAMN22857263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210314206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.355797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.439083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.323473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932553 SAMN22857001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314234/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.813555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.21359 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.797316 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932554 SAMN22857000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314235/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.939363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.874397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.534737 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932555 SAMN22856431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210314207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.711676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.770885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.817892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932556 SAMN22856771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.88804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.704976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.013706 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932557 SAMN22856138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314238/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.891804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.69913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.991993 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932558 SAMN22856137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.887825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.82111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.483337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932559 SAMN22856136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314241/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.959635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.367933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.69605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932560 SAMN22856135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.015939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.777871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.617579 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932561 SAMN22854627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210339261/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.547404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.908509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.103618 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932562 SAMN22856864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.962384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.398998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.559427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932563 SAMN22856860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339262/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.160568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.75452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.23022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932564 SAMN22856865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.931654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.75816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.562319 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932565 SAMN22856859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.36735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.790857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.7026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932566 SAMN22856858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.378936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.168765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.684606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932567 SAMN22855744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314237/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.479416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.780766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.493902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932568 SAMN22855602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339246/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.890041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.654768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.202834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932569 SAMN22856071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339250/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.709194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.359463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.613001 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932570 SAMN22856072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.474937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.975742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.454662 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932571 SAMN22855600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.479962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.81431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5524845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932572 SAMN22855601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.487373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.563396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.59654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932573 SAMN22856569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.57308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.231522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.461859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932574 SAMN22856570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.702494 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.141838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.328539 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932575 SAMN22853937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.976837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.140842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.771289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932576 SAMN22853936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.39251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.6117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.394177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932577 SAMN22853935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.314741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.332338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.75163 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932578 SAMN22853934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.665989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.0007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.886953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932579 SAMN22856567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.464943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.278576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.339059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932580 SAMN22853933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.467321 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.998135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.76388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932581 SAMN22855390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210339283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.78495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.88619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.745972 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932582 SAMN22855463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.68587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.4757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.970083 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932583 SAMN22854887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210339285/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.259802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.491846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.284846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932584 SAMN22856568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.723915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.533123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.701412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932585 SAMN22855462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.699524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.829432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.83151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932586 SAMN22855461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.454765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.560297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.147758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932587 SAMN22855460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339289/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.820544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.637966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.996937 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932588 SAMN22854009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339265/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.60082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.74869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.411867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932589 SAMN22856069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.1893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.081446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.80258 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932590 SAMN22856857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339267/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.395575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.746082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.612448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932591 SAMN22856856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.640039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.297487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.663019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932592 SAMN22856388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210339269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.2592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.758297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.475733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932593 SAMN22853768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339296/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.86509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.008944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.107075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932594 SAMN22856786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.182627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.615646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.421146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932595 SAMN22856681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210311146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.295224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.961453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.752338 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932596 SAMN22854943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210311147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.944663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.349755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.751862 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932597 SAMN22855078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.951605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.98941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.617378 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932598 SAMN22854658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210311151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.30928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.720789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.487704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932599 SAMN22855942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210311152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.336463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.471061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.921751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932600 SAMN22856785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.775674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.561721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.106824 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932601 SAMN22855313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.296614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.690853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.606058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932602 SAMN22854180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.917439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.744886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.494396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932603 SAMN22855312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.677084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.913202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.581446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932604 SAMN22857059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6329565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.926603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8517685 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932605 SAMN22854181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.292175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.40187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.294666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932606 SAMN22856782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.268301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.585304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.315159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932607 SAMN22856781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.898708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.112616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.859505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932608 SAMN22855437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210311167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.994037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.64661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.735321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932609 SAMN22854956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210311165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.041409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.922047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.37255 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932610 SAMN22854178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311164/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.950401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.891866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.54785 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932611 SAMN22854955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210311170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.927913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.345434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.522216 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932612 SAMN22854431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.730413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.388186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.786972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932613 SAMN22854430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.534075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.624641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.639761 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932614 SAMN22854429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.180824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.674607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.763778 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932615 SAMN22854428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311345/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.433292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.962236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.507715 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932616 SAMN22856784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.60303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.287176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.434486 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932617 SAMN22856783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311158/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.951644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.649584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.433761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932618 SAMN22856355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.801656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.915911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.365876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932619 SAMN22854179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.976597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.91932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.510513 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932620 SAMN22856680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210311161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.284528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.803448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.456415 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932621 SAMN22854867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.314199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.550226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.288219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932622 SAMN22855075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.233015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.687931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.429834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932623 SAMN22854427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.390503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.951201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.814018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932624 SAMN22854426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311349/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.77676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.497221 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.847976 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932625 SAMN22854113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.766111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.516089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932626 SAMN22854425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.177567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.152334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.343931 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932627 SAMN22853918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210314244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.194169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.952396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.427219 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932628 SAMN22853917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210314245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.433702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.873077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.622889 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932629 SAMN22853916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210314246/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.382163 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.197614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.711653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932630 SAMN22855421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210314249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.297005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.180496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.535656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932631 SAMN22855422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210314248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.213097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.679283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.646748 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932632 SAMN22855420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210314250/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.556678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.237567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8906975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932633 SAMN22856656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314251/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.288095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.847818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.268467 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932634 SAMN22856655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314252/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.459849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.306163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.698646 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932635 SAMN22856654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314253/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.375316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.772922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.479683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932636 SAMN22856653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314254/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.192095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.765845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.300423 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932637 SAMN22857003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314232/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.608583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.306345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.960983 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932638 SAMN22856652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314255/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.589607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.449802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.25964 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932639 SAMN22857002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314233/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.922453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.845388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.269861 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932640 SAMN22854834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314259/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.448336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.689896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.628813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932641 SAMN22855496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.857243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.779455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.456186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932642 SAMN22854635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210314260/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.62562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.334785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.785597 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932643 SAMN22855495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.251706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.6848755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.663212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932644 SAMN22854112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.485706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.705475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.189775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932645 SAMN22855743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.612273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.407465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.630542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932646 SAMN22854111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.514832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.59779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.927114 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932647 SAMN22855742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.185228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.8745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.920908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932648 SAMN22856134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.412586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.762272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.528728 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932649 SAMN22855741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.891248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.383753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.989704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932650 SAMN22856133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.550656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.3915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.36538 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932651 SAMN22854110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.708337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.469377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.477537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932652 SAMN22855850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.752855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.486984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.518787 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932653 SAMN22854971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210314462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.219788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.791159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.13227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932654 SAMN22854656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210314463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.807761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.030483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.550159 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932655 SAMN22855740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.780224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.411963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.749827 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932656 SAMN22854410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.12062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.27672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.723465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932657 SAMN22855673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.882901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.628614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.836444 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932658 SAMN22856098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.299099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.900492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.555843 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932660 SAMN22855994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316488/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.291069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.435951 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.007067 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932661 SAMN22855993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.156088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.759224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.912335 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932662 SAMN22855020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.901354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.703295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.766565 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932663 SAMN22855019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316493/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.9755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.816243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.571497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932664 SAMN22855018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.564874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.619341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.834322 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932665 SAMN22855017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.127109 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.877074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.450448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932666 SAMN22856481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.132662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.32693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.968271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932667 SAMN22856482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316499/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.4068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.981579 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.163485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932668 SAMN22855236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.238373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.702425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.72147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932669 SAMN22856096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.592015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.532332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.319631 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932671 SAMN22855670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.872923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.500368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.268055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932672 SAMN22855669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.632748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.637535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.2493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932673 SAMN22855668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.235912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.305561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.953352 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932674 SAMN22855667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.989596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.396617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.268891 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932675 SAMN22855666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.32885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.386667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.891582 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932659 SAMN22854409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314845/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.124445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.438404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.602324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932670 SAMN22856097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.871107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.747702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.379409 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932676 SAMN22855665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.528385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.242826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.790437 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932677 SAMN22855671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.43718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.708121 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.257568 lineage/clade name AY.23.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932678 SAMN22856283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.413525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.806671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.697979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932679 SAMN22856282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.446203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.298475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.622707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932680 SAMN22856281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.540465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.895816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.699689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932681 SAMN22854358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.729824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.462543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.647806 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932682 SAMN22854359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.33882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.95117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.81645 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932683 SAMN22854357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.750813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.390793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.468233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932684 SAMN22856602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.872559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.88184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.435968 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932685 SAMN22856601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.668477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.427782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.107103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932686 SAMN22854356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.017941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.432059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.885128 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932687 SAMN22854355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316529/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.821962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.252764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.253004 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932688 SAMN22855992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.58841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.647187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.519361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932689 SAMN22854354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.252682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.97398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.473728 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932690 SAMN22855644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.983874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.277084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.35564 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932691 SAMN22855643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.33495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.208534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.747852 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932692 SAMN22856274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9122305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.154154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.950985 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932693 SAMN22856273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.679305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.068549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.849462 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932694 SAMN22854330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.151535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.546476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.629567 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932695 SAMN22854058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.738781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.68723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.616583 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932696 SAMN22854909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337125/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.770844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.008837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.879807 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932697 SAMN22857164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.901297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.54698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.270323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932698 SAMN22855111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.88009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.325285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.137697 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932699 SAMN22855109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.711365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.473864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.240528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932700 SAMN22855110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.25569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.614405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.93806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932701 SAMN22855016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.92957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.46148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.408964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932702 SAMN22855015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.445835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.349518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.393438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932703 SAMN22855014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.53182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.947019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.547807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932704 SAMN22855013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.986269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.807636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.40033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932705 SAMN22857163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.55211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.883364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.010307 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932706 SAMN22857162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.926783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.828402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.553736 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932707 SAMN22857161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.85654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.007229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.411053 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932708 SAMN22855920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.387384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.416989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.389144 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932709 SAMN22853805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.934466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.522804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.224511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932710 SAMN22855409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.348633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.203203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.757364 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932711 SAMN22856275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.713615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.736668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.232603 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932712 SAMN22856927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.84118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.990961 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.15865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932713 SAMN22856926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.848574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.147482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.3693695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932714 SAMN22857160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.163366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.490202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.362941 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932715 SAMN22853803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.259754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.911479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.913873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932716 SAMN22857159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.651974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.281716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.431148 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932717 SAMN22856593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.928415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.544302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.53065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932718 SAMN22857157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.924368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.543438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.76776 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932719 SAMN22857158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.610053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.542225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.687987 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932720 SAMN22856088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.808113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.576565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.700627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932721 SAMN22853767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.805513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.29063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.735058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932722 SAMN22857156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.6310606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.327906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.3593025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932723 SAMN22854538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210339298/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.79875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.274005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.933124 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932724 SAMN22854284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.658715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.183882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.622952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932725 SAMN22854008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.184567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.585599 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.468461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932726 SAMN22854281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.483798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.43644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.89595 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932727 SAMN22854282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.004732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.71577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.848785 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932728 SAMN22854283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8955145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.167882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.163397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932729 SAMN22856566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339304/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.836493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.937378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.131676 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932730 SAMN22854280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339305/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.512694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.582111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.050173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932731 SAMN22854279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.129637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.211601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.335704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932732 SAMN22854278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339307/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.174685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.723196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.948551 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932733 SAMN22854277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.8608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.206482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.765959 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932734 SAMN22854276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339309/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.49816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.257246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.107613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932735 SAMN22856855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.290724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.19962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.575384 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932736 SAMN22856463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210339290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.161282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.461748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.235477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932737 SAMN22856462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210339291/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.536735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.952143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.650827 lineage/clade name AY.23.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932738 SAMN22854286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.782974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.233953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.834824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932739 SAMN22854285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.754822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.136663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.595037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932740 SAMN22856851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339317/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.20305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.218853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.950827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932741 SAMN22856708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210339294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.441713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.280386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.117912 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932742 SAMN22856852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.786465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.738342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.66372 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932743 SAMN22854007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.954233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.582544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.354067 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932744 SAMN22855459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339319/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.259006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.545464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.217089 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932745 SAMN22857129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.909987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.67301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.87605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932746 SAMN22857130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.477766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.210034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.54525 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932747 SAMN22853932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.7531805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.30652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.81458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932748 SAMN22856850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.76866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.20321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.740578 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932749 SAMN22856220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.912165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.071539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.000665 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932750 SAMN22856849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.055874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.611624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.433819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932751 SAMN22853931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210339323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.212752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.919965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.272948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932752 SAMN22856387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210339329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.441492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.471342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.19728 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932753 SAMN22854275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339328/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.083687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.848347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.568665 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932754 SAMN22853963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210343013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.264576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.257465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.06628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932755 SAMN22855816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210343014/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.368062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.953498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.664828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932756 SAMN22855557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210343005/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.416766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.757598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.362308 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932757 SAMN22855373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343007/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.275542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.740422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.801465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932758 SAMN22855374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.962627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.731091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.5980625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932759 SAMN22856174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.961792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.37568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.579002 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932760 SAMN22855366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.408933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3849945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.819653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932761 SAMN22855365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.962215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.620918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.199053 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932762 SAMN22855815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210343015/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.128822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.450062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.648014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932763 SAMN22855814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210343016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.744036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.458511 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.786587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932764 SAMN22856056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.97553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.671865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.461344 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932765 SAMN22855372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.172155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.574581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.093401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932766 SAMN22856055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343018/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.121635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.764636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.602942 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932767 SAMN22853962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210343020/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.590582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.26168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.117868 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932768 SAMN22855146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343019/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.266815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.952257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.422266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932769 SAMN22855145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343021/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.345396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.433521 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.854195 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932770 SAMN22855144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343023/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.605465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.575945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.683046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932771 SAMN22853728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343024/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.354053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.682459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.322922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932772 SAMN22855371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343025/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.706206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.456125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.778786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932773 SAMN22855556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210343027/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.210973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.20548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.166524 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932774 SAMN22855370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343026/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.560937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.545662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.308552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932775 SAMN22855369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.18777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.602867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.87991 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932776 SAMN22855368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.643832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.316234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.935552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932777 SAMN22855367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.987255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.810104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.120369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932778 SAMN22856172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.768944 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.389038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.807945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932779 SAMN22856054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.351578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.819199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.636997 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932780 SAMN22855364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.56782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.440775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.435438 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932781 SAMN22855363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.478155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.877104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.280787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932782 SAMN22855362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210343035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.153986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.21069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.003805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932783 SAMN22856053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343046/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.075577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.569042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.78511 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932784 SAMN22856052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343047/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.944857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.800552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.869795 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932785 SAMN22853727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343048/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.02814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.41502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.703093 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932786 SAMN22853697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337367/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.357648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.982699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.766354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932787 SAMN22853696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337368/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.852629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.740553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.674482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932788 SAMN22853695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337369/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.556362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.886097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.049582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932789 SAMN22854908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.643198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.829609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.834755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932790 SAMN22853694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.226025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.51254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.233576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932791 SAMN22855107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.577371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.295972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.06958 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932792 SAMN22855476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210337350/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.43776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.192646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.219691 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932793 SAMN22856087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337351/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.565087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.974279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.923781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932794 SAMN22856086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337352/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.991856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.943954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.751259 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932795 SAMN22856258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337376/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.722675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.313658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.415527 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932796 SAMN22856256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.259862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.799702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.38066 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932797 SAMN22856257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.27677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.951363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.54471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932798 SAMN22856255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.136837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.80269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.584394 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932799 SAMN22854049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.693756 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.900215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.265223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932800 SAMN22854753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.701101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.421228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.206662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932801 SAMN22856582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.971075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.2527685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.419164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932802 SAMN22854752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.722946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.649303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.177498 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932803 SAMN22855991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210337383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.391674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.581497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.607475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932828 SAMN22854751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.693165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.98641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.607405 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932829 SAMN22854750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.583357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.126541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.86395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932830 SAMN22856254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.48753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.421553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.921064 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932831 SAMN22854749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.649207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.601905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.58874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932832 SAMN22855218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.38185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.410371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.901442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932833 SAMN22856253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.734734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.609155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.418562 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932834 SAMN22855217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.744732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.424007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.86241 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932835 SAMN22856581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.446743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.527338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.836882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932836 SAMN22856470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.17659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.696337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.660164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932837 SAMN22856252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.075617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.376678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.127963 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932838 SAMN22856251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.756914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.454159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.436224 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932839 SAMN22855106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.415521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.6160345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.23158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932840 SAMN22856259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.370481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.618322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.076395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932841 SAMN22853798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.587159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.631368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.759318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932842 SAMN22855904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339817/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.1365185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.577705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.796388 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932843 SAMN22856844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339818/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.332064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.64794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.183407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932844 SAMN22856843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339819/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.79501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.169617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.171556 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932845 SAMN22856842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339820/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.181013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.983479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.545294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932846 SAMN22856841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339821/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.233257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.297886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.900955 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932847 SAMN22857120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339822/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.271439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.618399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.253193 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932848 SAMN22857119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339823/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.419155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.401217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.547144 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932849 SAMN22857118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339824/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.539001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.92374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.691553 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932850 SAMN22857117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339825/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.03034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.968283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.338669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932851 SAMN22854004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339826/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.25213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.005106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.883455 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932852 SAMN22856215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339827/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.870468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.45342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.377872 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932853 SAMN22856386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210339829/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.613262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.846384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.640228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932854 SAMN22854993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339830/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.42537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.141947 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.587717 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932855 SAMN22857124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339807/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.946087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.978893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.554615 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932856 SAMN22857123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339808/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.564302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.01777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.750128 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932857 SAMN22856559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339834/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.638975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.823856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.179167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932858 SAMN22855588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339835/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.878283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.351995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.471941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932859 SAMN22856732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339836/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.476209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.381584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.48432 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932860 SAMN22856731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339837/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.450586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.954294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.748335 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932861 SAMN22856730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339838/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.382241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.32021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.690621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932862 SAMN22856729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339839/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.187594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.382426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.32773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932863 SAMN22856728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339840/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.466696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.548601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.357666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932864 SAMN22856840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339841/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.815443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.441872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.484364 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932865 SAMN22855587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339842/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.510746 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.527658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9507885 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932866 SAMN22856727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339844/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.5588255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.230908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.267672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932867 SAMN22854003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339845/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.450445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.280296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.972956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932868 SAMN22854002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339846/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.704112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.889995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.642872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932869 SAMN22854001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339847/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.644561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.525333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.299107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932870 SAMN22854553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210339848/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.308168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.730994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932871 SAMN22857250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210339849/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.449795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.47391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.796708 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932872 SAMN22856839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339850/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.90049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.814081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.40186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932873 SAMN22856838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339851/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.45446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.79751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.307491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932874 SAMN22853961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210343057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.914917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.269098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.527763 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932875 SAMN22855143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343058/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.642052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.810648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.351517 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932876 SAMN22855142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.8680315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.31364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.110514 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932877 SAMN22856453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.178814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.216835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.019457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932878 SAMN22855771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210312665/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.403725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.288828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.145205 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932879 SAMN22855770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210312666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.026638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.240011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.155218 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932880 SAMN22854156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.954996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.199497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.65406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932881 SAMN22854155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.620638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.427438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.837408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932882 SAMN22854154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312669/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.56411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.46035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.294474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932883 SAMN22856154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.16497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.073917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.025866 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932884 SAMN22855506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210313122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.293549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.668236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.176397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932885 SAMN22855505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210313123/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.113461 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.317155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.786087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932886 SAMN22856046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210313144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.327227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.599731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.889787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932887 SAMN22856021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.749296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.47624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.70651 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932888 SAMN22856346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.862501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.98778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.15276 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932889 SAMN22856345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.3422165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.478994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.62071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932890 SAMN22855072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.885214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.897936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.736967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932891 SAMN22856674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.442657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.293444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.49276 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932892 SAMN22854153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.3695893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.3349695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.255136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932893 SAMN22856436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210313153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.09733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.652658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.969892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932894 SAMN22854939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.9214325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.556911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.542995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932895 SAMN22856675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210312658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.186983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.734196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.77812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932896 SAMN22855937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210312659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.730433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.426641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.695219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932897 SAMN22855936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210312660/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.697146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.573738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.731757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932898 SAMN22856673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.213362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.304478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.886253 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932899 SAMN22855071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.926348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.79517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.471891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932900 SAMN22856672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.155937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.712048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.430828 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932901 SAMN22856344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.72343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.525032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.519298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932902 SAMN22854938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.938528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.215994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.295801 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932903 SAMN22855125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210313163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.770844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.800982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.620209 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932904 SAMN22854937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313164/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.477165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.370102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.596558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932905 SAMN22855861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.646633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.563179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.902647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932906 SAMN22856671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.62046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.365622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.772903 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932907 SAMN22854936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313168/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.260564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.966458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.21526 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932908 SAMN22856435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210313155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.263762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.7473 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.250996 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932909 SAMN22857267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210313156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.36797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.960821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.639797 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932910 SAMN22854824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.911181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.439526 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.95132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932911 SAMN22854823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.614551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.410718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.002479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932912 SAMN22856314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.548109 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.259773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.579411 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932913 SAMN22856317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.852045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.923591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.325731 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932914 SAMN22856768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210315406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.639471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.121035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.526136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932915 SAMN22856429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210315434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.664466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.033645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.564388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932916 SAMN22854507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210315435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.906584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.714321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.576178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932917 SAMN22854970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210315437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.390602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.764074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.628302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932918 SAMN22854822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.559875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.25398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.35301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932919 SAMN22856125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.348372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.24609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.856459 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932920 SAMN22856124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.47621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.93145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.48045 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932921 SAMN22856123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.710338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.389368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4871855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932922 SAMN22856122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.09455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.60722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9636545 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932923 SAMN22856980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.237473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.787893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.661343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932924 SAMN22854821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.591153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.299901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.389295 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932925 SAMN22854820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.493301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.077803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.970247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932926 SAMN22855259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.57135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.549269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.370295 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932927 SAMN22856311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.4327545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.575721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.804913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932928 SAMN22856310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.634462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.275116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.991367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932929 SAMN22857195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.212553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.768589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.415321 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932930 SAMN22857194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.809717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.238426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.921375 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932931 SAMN22857193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.148631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.446966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.861396 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932932 SAMN22854096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.332764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.363096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.969116 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932933 SAMN22855258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.80687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.890043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.69095 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932934 SAMN22855419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210315455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.759933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.326551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.454787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932935 SAMN22856313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.937393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.946415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.560404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932936 SAMN22856312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.991842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.9043255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.451204 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932937 SAMN22855257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.207022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.296282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.007708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932938 SAMN22855256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.444057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.197794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.15366 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932939 SAMN22855255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315463/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.137722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.364955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.285886 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932940 SAMN22855254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.346033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.42992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.988754 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932941 SAMN22855842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210315465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.910996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.231185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.541526 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932942 SAMN22855921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.361778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.920533 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.9665 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932943 SAMN22855838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210337079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.699911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.122135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.541107 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932944 SAMN22854772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.361992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.248165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.292503 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932945 SAMN22854771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.178117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.174757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.514753 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932946 SAMN22855837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210337084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.961704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.335724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.150837 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932947 SAMN22854061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.368635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.752586 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.115282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932948 SAMN22856595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.362765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.567659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.575633 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932949 SAMN22854574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.965214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.631458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.494872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932950 SAMN22855836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210337091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.900555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.483867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.933744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932951 SAMN22854063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.721333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.929647 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.526918 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932952 SAMN22854062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.892242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.98718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.972517 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932953 SAMN22856594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.28241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.995048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.522358 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932954 SAMN22856757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.327552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.479907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.177862 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932955 SAMN22855479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210337097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.659725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.07757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.073513 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932956 SAMN22856756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.351782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.467312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.267778 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932957 SAMN22855478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210337100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.836115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.339587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.30133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932958 SAMN22854770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.28443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.607725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.667362 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932959 SAMN22854769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337103/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.670496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.44299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.335636 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932960 SAMN22854060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.470852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.857456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.21611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932961 SAMN22854059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.739233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.953817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.484102 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932962 SAMN22855112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.338604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.902843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.353947 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932963 SAMN22854910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.631912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.751216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.578125 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932964 SAMN22854335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.501437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.936313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.477822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932965 SAMN22854334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.5292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.851896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.916666 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932966 SAMN22856471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.104856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.45122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.903221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932967 SAMN22854333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.966375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.687748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.149124 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932968 SAMN22854332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.57563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.576752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.197592 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932969 SAMN22854331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.8102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.205688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.130823 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932970 SAMN22854768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.241055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.78861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.679733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932971 SAMN22855411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.787254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.087955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.200226 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932972 SAMN22855410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.10774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.654078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.816864 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932973 SAMN22855645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.969489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.441799 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.949614 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932974 SAMN22855915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.731796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.482016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.609974 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932975 SAMN22855405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.967996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.67808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.332872 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932976 SAMN22853693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.41664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.026953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.177809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932977 SAMN22853692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.649575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.81913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.144038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932978 SAMN22853691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.405182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.00524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.906372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932979 SAMN22856084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.664768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.749804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.498865 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932980 SAMN22853942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210337512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.0184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.82165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.712193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932981 SAMN22854048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.39048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.012243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.765013 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932982 SAMN22855011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.868556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.780047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.644248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932983 SAMN22855010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.480205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.904982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.189551 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932984 SAMN22855404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.355835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.292501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.031685 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932985 SAMN22855009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.4331455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.137272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.284595 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932986 SAMN22854748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.868977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.583252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.370118 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932987 SAMN22854747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.40611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.735251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.607396 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932988 SAMN22856250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.795512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.283366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.291451 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932989 SAMN22854746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.873806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.429445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.5859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932990 SAMN22856911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.652674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.78633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.341271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932991 SAMN22856910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.409958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.271418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.737316 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932992 SAMN22856909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.632054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.292925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.916823 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932993 SAMN22856914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.462212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.222789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.407721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932994 SAMN22856913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.911983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.25427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.47503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932995 SAMN22856912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.458727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.64453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932996 SAMN22854329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.864061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.269415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.643487 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932997 SAMN22853690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.820928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.485346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.939511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932998 SAMN22857148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.850864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.5539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.124823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10932999 SAMN22853689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.204337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.784071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.428881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933000 SAMN22856908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.928028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.202377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.039202 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933001 SAMN22855990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210337741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.282812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.378968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.966082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933002 SAMN22856907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.641632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.666845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.807379 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933003 SAMN22856906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.44707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.446135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.250341 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933004 SAMN22854907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.583975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.259653 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.91954 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933005 SAMN22854906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.775644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.848932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.630938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933006 SAMN22856837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339852/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.419114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.456875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.206701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933007 SAMN22856836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339853/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.188007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.68548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.526999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933008 SAMN22856835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.803174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.153317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.365082 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933009 SAMN22856214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339832/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.014333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.335514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.311534 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933010 SAMN22854992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339831/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.60882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.82795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.394593 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933011 SAMN22856560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339833/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.542955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.476257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.886433 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933012 SAMN22855192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339926/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.727755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2660055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.580276 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933013 SAMN22855190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.45914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.61684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.54209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933014 SAMN22855191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339927/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.200941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.97349 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.962452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933015 SAMN22857116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.497861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.719084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8899765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933016 SAMN22856558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.756075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.490356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.97182 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933017 SAMN22856702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210339933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.149122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.235327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.323105 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933018 SAMN22856557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339935/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.73024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.672506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.533129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933019 SAMN22856556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339936/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.904953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.973558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.7111845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933020 SAMN22856555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339937/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.553825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.016201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.66626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933021 SAMN22856554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339938/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.188677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.639229 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933022 SAMN22856553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339939/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.762125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.817744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.243946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933023 SAMN22856552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339940/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.656061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.806326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.468203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933024 SAMN22855189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339941/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.448452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.11038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.424822 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933025 SAMN22857115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339944/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.94575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.363192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.385065 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933026 SAMN22857114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339945/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.652525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.51134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.23821 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933027 SAMN22857113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339946/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.795543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.451736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.289071 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933028 SAMN22857112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339947/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.822773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.375171 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.921267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933029 SAMN22856551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.275564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.424004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.460943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933030 SAMN22857111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.586443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.394066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.018225 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933031 SAMN22857110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.288141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.827295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.553676 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933032 SAMN22856834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339922/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.307171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.568474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.906601 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933033 SAMN22856213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.702606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.806522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.533733 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933034 SAMN22856550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.547832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.829117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.6638975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933035 SAMN22856549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.140045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.567929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.68211 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933036 SAMN22856548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.281528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.708555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.921448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933037 SAMN22856547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.647486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.60167 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.983097 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933038 SAMN22854861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313169/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.620821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.38331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.488813 lineage/clade name AY.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933039 SAMN22855810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210313170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.87106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.512772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.605131 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933040 SAMN22854860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.852837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.303183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.215624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933041 SAMN22857046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.457258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.978855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.583101 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933042 SAMN22857045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313278/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.464613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.398363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.798965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933043 SAMN22854935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.620457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.535707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.402035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933044 SAMN22856045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210313173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.739119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.873306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.522686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933045 SAMN22856670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.361017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.886654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.97985 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933046 SAMN22853863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.881975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.536697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.84549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933047 SAMN22856343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.681771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.861597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.905226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933048 SAMN22856020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.398828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.460772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.759936 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933049 SAMN22856342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.364514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.285773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.826607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933050 SAMN22854152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.593978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.947321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.914395 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933051 SAMN22854151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313180/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.885503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.902896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.991979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933052 SAMN22854934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.915046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.247912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.261244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933053 SAMN22854858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313295/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.674688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.327475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.04998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933054 SAMN22854857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313296/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.316978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.499448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.969383 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933055 SAMN22857044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.876762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.915894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.53915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933056 SAMN22857043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.472758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.494953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.795628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933057 SAMN22857042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.214884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.312885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.27157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933058 SAMN22856153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.600165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.584457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.796129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933059 SAMN22856152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.155595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.503649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.687707 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933060 SAMN22856151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313284/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.698172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.030063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.422457 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933061 SAMN22853921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210313286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.755363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.185175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.31923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933062 SAMN22853920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210313287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.781197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.006832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.77125 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933063 SAMN22855860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313291/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.89439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.921262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.1554 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933064 SAMN22854859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.625095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.716574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.181982 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933065 SAMN22855859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.965958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.962872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.896332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933066 SAMN22854933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.303066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.304022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.563531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933067 SAMN22854150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.126183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.572355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.284716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933068 SAMN22855769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.6052065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.701207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.754264 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933069 SAMN22855070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.515197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.725028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.611163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933070 SAMN22855793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210201504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.22992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.650486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.584356 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933071 SAMN22856169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210201505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.928446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.663008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.535673 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933072 SAMN22856699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210201506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.82583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.558334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.66565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933073 SAMN22855873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210201507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.731296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.638618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.335205 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933074 SAMN22856703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210315466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.66824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.930601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.830505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933075 SAMN22855806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315467/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.574566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.625423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.158827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933076 SAMN22855805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.21627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.200081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.421721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933077 SAMN22856428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210315469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.531958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.620499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.136633 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933078 SAMN22857192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.312132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.18354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.900827 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933079 SAMN22857191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315471/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.946476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.644827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.499207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933080 SAMN22857190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315472/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.39574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.5342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.999704 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933081 SAMN22854655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210315474/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.506506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.632017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.988626 lineage/clade name AY.4.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933082 SAMN22854654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210315476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.426199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.387672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.242674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933083 SAMN22854589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7906713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.160114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.159507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933084 SAMN22854528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210315478/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.51296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.949539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.259491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933085 SAMN22854969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210315479/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.34261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.634743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.92861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933086 SAMN22855841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210315480/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.410924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.149755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.1179905 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933087 SAMN22854920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210315481/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.899954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.750755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.656678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933088 SAMN22854506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210315482/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.671344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3679695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.199905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933089 SAMN22855418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210315456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.470251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.756011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.745969 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933090 SAMN22855492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210315457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.12474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.995897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.823635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933091 SAMN22855807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.67091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.704308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.181631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933092 SAMN22855722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315485/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.811018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.887829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.448032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933093 SAMN22855721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315486/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.181486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.46519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.18022 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933094 SAMN22855720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315487/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.959069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.693069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.2773905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933095 SAMN22855719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315488/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.779646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.624946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.677118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933096 SAMN22855051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210315489/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.918848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.598307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.201715 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933097 SAMN22856493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210315490/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.16329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.018242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.789324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933098 SAMN22856648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210315491/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.799625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.30667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.142433 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933099 SAMN22854095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315492/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.909939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.816303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.953321 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933100 SAMN22854094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.752867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.654728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.47411 lineage/clade name AY.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933101 SAMN22855118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210315495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.319649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.046013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.467623 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933102 SAMN22855117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210315496/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.841856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.422997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.913113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933103 SAMN22855927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210315497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.968895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.20114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.175785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933104 SAMN22854093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.746852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.646249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.75307 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933105 SAMN22855804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315500/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.9700704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.661971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.3692465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933106 SAMN22854905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.706577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.323168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.8995 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933107 SAMN22856469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.307411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.63785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.323504 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933108 SAMN22853796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.293718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.552124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.609158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933109 SAMN22853794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337751/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.108005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.81821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.606755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933110 SAMN22853795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.455654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.729086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.876087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933111 SAMN22853793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.468667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.337342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.265977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933112 SAMN22853792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.762102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.765875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.987688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933113 SAMN22853791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.555779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.49443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.099218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933114 SAMN22854573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.531635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.48312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.988989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933115 SAMN22853790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.868752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.618557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.066027 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933116 SAMN22853797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.233694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.114057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.014048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933117 SAMN22856249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.862244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.224464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.361781 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933118 SAMN22855634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.595307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.48326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.505762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933119 SAMN22855216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.043823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.000536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.018618 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933120 SAMN22855215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.85506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.591692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.629684 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933121 SAMN22854570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.960407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.945334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.766523 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933122 SAMN22855105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.629652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.847513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.602764 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933123 SAMN22853899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210337772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.74827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.685545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.28882 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933124 SAMN22856468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.77881 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.893091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.789757 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933125 SAMN22855214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.781783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.412715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.484305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933126 SAMN22855213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.872078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.40214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.470195 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933127 SAMN22853787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.842489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.705225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.582391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933128 SAMN22856901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.816252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.736229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.54044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933129 SAMN22853786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.327126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.169416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.890547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933130 SAMN22855633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.73601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.615161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.296644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933131 SAMN22856905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.917555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.25345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.09043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933132 SAMN22856904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.912914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.296692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.012405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933133 SAMN22856467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.389994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.354492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.552677 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933134 SAMN22853789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.508615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.688727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.118562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933135 SAMN22854572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8947115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.826043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.3516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933136 SAMN22854571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.869525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.952027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.53742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933137 SAMN22853900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210337761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.956097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.180101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.741503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933138 SAMN22856212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.68753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.130587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.611624 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933139 SAMN22856064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.881763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.67305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.410225 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933140 SAMN22856063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.255912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.4560585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.456625 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933141 SAMN22856211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.424412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.782407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.2568655 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933142 SAMN22856546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.69616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.806236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.48622 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933143 SAMN22855977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.820055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.312606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.186897 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933144 SAMN22855976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.682457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.476078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.006254 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933145 SAMN22855975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.1096325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.896863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.554419 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933146 SAMN22854611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210311710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.613293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.705062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.361366 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933147 SAMN22855311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.663988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.21486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.390934 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933148 SAMN22854177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.40804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.409794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.908104 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933149 SAMN22854515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210311713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.595249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.995611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.891889 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933150 SAMN22854610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210311714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.433776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.568388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.702395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933151 SAMN22855076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.723201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.002443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.541946 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933152 SAMN22855077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.89736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.884091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.118093 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933153 SAMN22856024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210311734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.430746 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.992935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.356998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933154 SAMN22854608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210311735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.433706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.73732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.387426 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933155 SAMN22855074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210311719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.380978 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.690977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.264458 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933156 SAMN22855515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.794683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.974024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.856073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933157 SAMN22853876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.849135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.796933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.901146 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933158 SAMN22853875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.735051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.581111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.068426 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933159 SAMN22854424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.103352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.515732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.883881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933160 SAMN22854864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.673567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.613215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.934783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933161 SAMN22854533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210311742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.384094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.245861 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933162 SAMN22854176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.300268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.953976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.295258 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933163 SAMN22855941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210311752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.257769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.846107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.84215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933164 SAMN22854175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.369324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.192959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.578857 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933165 SAMN22854420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.71343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.811752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.571018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933166 SAMN22854419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.707579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.610516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.595972 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933167 SAMN22855863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210311755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.915972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.91555 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933168 SAMN22855436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210311756/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.133028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.381725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.906006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933169 SAMN22856780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.495022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.947634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.719513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933170 SAMN22855435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210311758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.762892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.605179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.936985 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933171 SAMN22856023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210311759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.211927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.436466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.148626 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933172 SAMN22856779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210311760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.505933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.354834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.509552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933173 SAMN22854863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.241111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.871405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.421638 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933174 SAMN22855434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210311762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.705376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.782246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.395432 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933175 SAMN22854862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.759906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.382881 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.245647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933176 SAMN22854423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.747097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.014755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.015833 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933177 SAMN22854408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314846/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.146959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.507546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.735645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933178 SAMN22854422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.597052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.350578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.263584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933179 SAMN22854407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314847/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.187023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.826767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.25667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933180 SAMN22854921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210314256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.195307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.543944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.309485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933181 SAMN22855054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210314257/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.141441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.094763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.05632 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933182 SAMN22854835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.206623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.840319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.626804 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933183 SAMN22854405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314850/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.618218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.525704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.905269 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933184 SAMN22854404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314851/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.623232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5712385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.404354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933185 SAMN22856999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314857/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.312131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.794924 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.266565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933186 SAMN22856998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314858/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.814177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.50094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.70215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933187 SAMN22855344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210314859/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.147123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.962631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.534897 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933188 SAMN22855343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210314860/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.704956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.297197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.641125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933189 SAMN22855342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210314862/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.327328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.857845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.08216 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933190 SAMN22855930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210314863/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.772187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.457052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.077664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933191 SAMN22855849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314865/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.197113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.244483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.192098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933192 SAMN22855053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210314866/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.391406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.568739 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.401971 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933193 SAMN22854406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314848/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.004799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.17436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.735104 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933194 SAMN22853889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210314849/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.43607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.249588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.37657 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933195 SAMN22854109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314867/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.57867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.382399 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.922798 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933196 SAMN22855848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314868/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.12009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.770426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.53444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933197 SAMN22856651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314869/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.489975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.206306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.981865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933198 SAMN22855847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314870/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.81332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.843854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.766269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933199 SAMN22855123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210314871/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.780427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.516018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.768858 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933200 SAMN22855494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314883/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.410103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.60763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.609196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933201 SAMN22856650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314881/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.850462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.253736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.874356 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933202 SAMN22856132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314872/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.791534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.405823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.195679 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933203 SAMN22854108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314875/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.460967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.243768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.422256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933204 SAMN22856131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314873/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.29548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.897667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.887682 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933205 SAMN22854106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314877/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.573399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.893837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.478438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933206 SAMN22854107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314876/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.570706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.774512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.351774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933207 SAMN22856494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210314878/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.694876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.962888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.425459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933208 SAMN22855739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314879/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.654142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.603123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.223395 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933209 SAMN22854105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314880/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.151295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.892643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.277067 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933210 SAMN22854353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.295912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.872677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.90501 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933211 SAMN22856480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316534/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.751643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7960005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.903113 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933212 SAMN22855235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316533/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.193636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.396837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2237215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933213 SAMN22853907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.197561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.268318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.076834 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933214 SAMN22856095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.29577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.131498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.894065 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933215 SAMN22855664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.932528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.372305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.99983 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933216 SAMN22856933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.673393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.920507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.399504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933217 SAMN22855113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210316515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.765525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.505911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.946845 lineage/clade name AY.32 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933218 SAMN22856600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.11187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.539995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.71367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933219 SAMN22855412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210316516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.95155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.330963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.476602 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933220 SAMN22856599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.517417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.534799 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.262737 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933221 SAMN22857257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210316546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.332819 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.533413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.245607 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933222 SAMN22854352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.305338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.764034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.000992 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933223 SAMN22854780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.397201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.972346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.93725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933224 SAMN22854350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.506638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.823182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.702499 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933225 SAMN22854351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.752744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.312836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.097704 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933226 SAMN22854349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.87984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.423597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.54722 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933227 SAMN22854348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.754631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.389584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.283136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933228 SAMN22856479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.373232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.538536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.130286 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933229 SAMN22856478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.442276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.58368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.405771 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933230 SAMN22856477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.930728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.532308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.034388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933231 SAMN22856476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.669756 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.80898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.631508 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933232 SAMN22856475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.231043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.850064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.85748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933233 SAMN22856474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.393843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.333928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.109595 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933234 SAMN22855234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.765811 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.772224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.866708 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933235 SAMN22856094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.719135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.223136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.513478 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933236 SAMN22856473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.805608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.966738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.694828 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933237 SAMN22856093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.169252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.610363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.195244 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933238 SAMN22856932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.897274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.923414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.733265 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933239 SAMN22856092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.446806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.756504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.179068 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933240 SAMN22856091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.226493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.636302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.936388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933241 SAMN22853906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.534168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.349174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.5975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933242 SAMN22857154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.324797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.829493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.437551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933243 SAMN22857155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337158/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.710857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.329046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.108532 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933244 SAMN22857153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.46249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.16009 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.680313 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933245 SAMN22857152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337163/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.338522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.552683 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.719551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933246 SAMN22854056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337164/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.629672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.449559 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.348864 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933247 SAMN22854767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.472442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.905783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.807159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933248 SAMN22854766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.433048 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.40339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.521635 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933249 SAMN22854765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.301929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.781232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.496002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933250 SAMN22853804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.764757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.70926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.622551 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933251 SAMN22854057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.738884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.534369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.800213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933252 SAMN22854762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.690653 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.548902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.230379 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933253 SAMN22853901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210337173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.506475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.415483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.982029 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933254 SAMN22855408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.424603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.900375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.691643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933255 SAMN22854055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9669075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.875446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.121261 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933256 SAMN22855407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.783272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.280508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.171093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933257 SAMN22854764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.40423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.731245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.412811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933258 SAMN22854763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.308794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.496056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.285381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933259 SAMN22856925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.120363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.091362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.720414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933260 SAMN22856924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.111955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.214379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.113965 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933261 SAMN22854054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.23634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.44082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.968536 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933262 SAMN22855224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.444124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.232225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.475615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933263 SAMN22855223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.942305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.918966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.415243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933264 SAMN22854053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.764097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.730389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.944632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933265 SAMN22855220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.543773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.619494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.2204485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933266 SAMN22856592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.03672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.541151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.640139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933267 SAMN22857151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.357475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.3618355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.632132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933268 SAMN22853698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210337183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.950813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.191109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.792152 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933269 SAMN22856591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337185/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.252117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.600153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.146498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933270 SAMN22855222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337186/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.670563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.08344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.847105 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933271 SAMN22856590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.742066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9585495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.591106 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933272 SAMN22856589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.726263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.588385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.521994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933273 SAMN22855908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.443808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.302692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.078409 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933274 SAMN22855907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.141841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.338605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.507027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933275 SAMN22854761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.60319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.433174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.880045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933276 SAMN22856854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.918801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.0727625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.301178 lineage/clade name AY.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933277 SAMN22856068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.05642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.347868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.131796 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933278 SAMN22856853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.814579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.408953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.611013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933279 SAMN22856067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.171406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.645694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.998009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933280 SAMN22854006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.88354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.835934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.888866 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933281 SAMN22855595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.353527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.831833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.918718 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933282 SAMN22855594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.369219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.745512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.87789 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933283 SAMN22855978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.736017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.569355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.389166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933284 SAMN22854005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.511387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.631594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.76542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933285 SAMN22854274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.176941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.510011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.470624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933286 SAMN22854273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.213045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.155247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.724617 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933287 SAMN22854272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.107424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.974409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.821807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933288 SAMN22854271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.420122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.034021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.999855 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933289 SAMN22855906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339343/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.626316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.757802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.1503935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933290 SAMN22853766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.14471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.382313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.802889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933291 SAMN22853765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339345/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.592848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.529918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.483592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933292 SAMN22854270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210339347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.852608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.992965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.471223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933293 SAMN22853764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339346/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.87497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.859365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.336699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933294 SAMN22856066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.927878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.731882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.290936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933295 SAMN22856065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.547016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.203304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.461348 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933296 SAMN22855353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210339762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.566481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.712017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.496958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933297 SAMN22855458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.487084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.4995775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.755657 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933298 SAMN22855193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.603853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.70974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.413322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933299 SAMN22855457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.33577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.653746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.326266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933300 SAMN22855456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.340748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.496503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.391602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933301 SAMN22854954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210339770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.289419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.485341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.22407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933302 SAMN22857128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.441545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.450776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.453997 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933303 SAMN22854521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210339772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.282545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.809246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.184835 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933304 SAMN22856565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.830956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.170284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.447886 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933305 SAMN22856564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.37391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.345745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.936035 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933306 SAMN22853725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343050/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.959385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.691393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.611909 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933307 SAMN22853726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.015469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.82187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.467873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933308 SAMN22856171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343051/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.902829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.217643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.736805 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933309 SAMN22857084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210343053/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.523064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.721495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.694952 lineage/clade name AY.39.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933310 SAMN22856051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343054/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.934711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.927647 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.8484 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933311 SAMN22856050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210343055/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.865042 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.414873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.436897 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933312 SAMN22854542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210343056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.356817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.687508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.010696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933313 SAMN22855555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210343037/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.15821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.572287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.491346 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933314 SAMN22855554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210343038/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.823837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.609104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.184454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933315 SAMN22855553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210343039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.712815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.621923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.299661 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933316 SAMN22854661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210343041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.684458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.735182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.293219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933317 SAMN22854660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210343042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.487194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.88403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.668596 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933318 SAMN22856170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210343065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.926976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.265045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.560216 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933319 SAMN22853724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210343067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.53145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.536364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.89444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933320 SAMN22856410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210343069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.346628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.559677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.340225 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933321 SAMN22856411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210343068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.491919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.702336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.238648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933322 SAMN22856409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210343070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.372368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.459341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.542469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933323 SAMN22856408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210343071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.866934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.334953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.922374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933324 SAMN22856407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210343072/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.320761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.4660225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.400325 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933325 SAMN22854884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210343073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.206782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.245833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.932834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933326 SAMN22855875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210343074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.988588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.713152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.412724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933327 SAMN22855874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210343075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.95078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.253296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.199972 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933328 SAMN22855813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210343077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.128284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.775953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.135569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933329 SAMN22853960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210343079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.547377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.516718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.551481 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933330 SAMN22853676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210343080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.690891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.690025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.511164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933331 SAMN22853675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210343081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.784231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.201242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.837517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933332 SAMN22856454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210466001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-17 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.609612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.869547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.157213 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933333 SAMN22855141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.743969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.825937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.826604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933334 SAMN22855140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.481148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.192057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.551273 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933335 SAMN22853677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210343062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.333202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.823315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.474253 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933336 SAMN22855139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.075682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.465807 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.391634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933337 SAMN22855138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210343064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.46471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.3766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.153414 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933338 SAMN22854421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.700074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.518959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.574292 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933339 SAMN22854866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.153082 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.434891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.567164 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933340 SAMN22854607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210311736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.526129 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.14288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.777685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933341 SAMN22854865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210311740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.262058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.731318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.522819 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933342 SAMN22855513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.0296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.593225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.666069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933343 SAMN22855862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210311764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.923851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.867441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.172764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933344 SAMN22855514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.72426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.844333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.223968 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933345 SAMN22856354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210311770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.500656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.95986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.486403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933346 SAMN22854418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210311730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.345219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.6125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.100782 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933347 SAMN22856025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210311732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.638677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.165401 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.570481 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933348 SAMN22854609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210311733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.287868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.60421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.10812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933349 SAMN22855509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.452202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.977098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.122545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933350 SAMN22857058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.997051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.939075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9395895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933351 SAMN22855310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.3048935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.705722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.989454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933352 SAMN22855309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.73266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.259138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.705332 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933353 SAMN22856502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210311776/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.486897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.222887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.220308 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933354 SAMN22855308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.203495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.344824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.605164 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933355 SAMN22856501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210311779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.688656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.270878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.180708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933356 SAMN22855307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.07032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.969587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.573788 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933357 SAMN22855773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210311780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.30839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.310398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.224508 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933358 SAMN22853874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.241236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.490578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.760063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933359 SAMN22855306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210311782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.653183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.361746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.45113 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933360 SAMN22853873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.218798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.46548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.778768 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933361 SAMN22853872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.140966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.319147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.990788 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933362 SAMN22853871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.190113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.766033 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.657791 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933363 SAMN22853870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.655806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.727873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.335186 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933364 SAMN22853869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.341936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.692638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.992607 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933365 SAMN22853868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.174402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.220513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.923523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933366 SAMN22855512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.24381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.373333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.470528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933367 SAMN22855511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.333247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.778751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.443168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933368 SAMN22855510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.83028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.902565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.9233 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933369 SAMN22856319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314884/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.560707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.872967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.230114 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933370 SAMN22854174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210311798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.483132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.3303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.126064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933371 SAMN22854104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314885/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.154667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.557165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.88073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933372 SAMN22855929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210314886/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.505205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.046351 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.817214 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933373 SAMN22855843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314901/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.878565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.965015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.259325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933374 SAMN22855733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314900/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.909891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.323877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.139124 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933375 SAMN22854103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314887/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.378523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.01254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.597063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933376 SAMN22855052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210314888/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.969378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.662994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.970783 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933377 SAMN22855738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314889/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.430573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.815289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.33001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933378 SAMN22855737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314890/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.460234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.87117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.394144 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933379 SAMN22855736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314891/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.85009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.802856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.416084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933380 SAMN22855846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314894/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.924942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.3974695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.548062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933381 SAMN22855845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314895/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.118006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.226017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.496866 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933382 SAMN22855735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314896/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.254812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.494497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.826148 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933383 SAMN22855734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314898/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.401335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.969301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.588774 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933384 SAMN22855844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210314899/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.906933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.14566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.505867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933385 SAMN22854403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314902/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.719372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.929884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.704298 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933386 SAMN22854402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314903/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.671032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.380047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.289674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933387 SAMN22855493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210314904/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.138262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.898455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.61203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933389 SAMN22856770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314893/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.7391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.227335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.447596 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933390 SAMN22856994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314914/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.710203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.186752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.799347 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933391 SAMN22856993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.910626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.963391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.940395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933392 SAMN22856997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314911/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.498686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.218601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.617834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933393 SAMN22856996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314912/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.524799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.022162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.353622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933394 SAMN22856995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314913/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.325832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.4351 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.53223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933395 SAMN22854397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314916/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.544053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.68834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.680064 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933396 SAMN22854396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.810682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.474384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.610252 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933397 SAMN22856992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314918/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.492456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.166983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.796545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933398 SAMN22854394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.419437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.862806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.378972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933399 SAMN22854395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314920/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.3813505 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.243965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.797671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933400 SAMN22854393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314923/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.740442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.180138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.674429 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933388 SAMN22856318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210314892/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.675724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.813494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.728907 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933401 SAMN22854392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.306236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.41088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.521173 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933402 SAMN22853905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.238796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.237925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.808336 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933403 SAMN22854501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.729187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.86417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.3877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933404 SAMN22855232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316567/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.195515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.002063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.020628 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933405 SAMN22856280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.012556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.48571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.767828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933406 SAMN22857168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.825447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.573057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.545673 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933407 SAMN22857167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316570/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.217308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.179201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.38678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933408 SAMN22857166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316571/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.59917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.924198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.640013 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933409 SAMN22855925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210316572/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.260938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.367768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.131468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933410 SAMN22855924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210316573/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.052501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.275341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.715543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933411 SAMN22856090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.303131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.190403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.687309 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933412 SAMN22856931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.698897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.592363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.113675 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933413 SAMN22855233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.936468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.871159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.634868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933414 SAMN22856930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316574/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.939754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.779718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.599969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933415 SAMN22856929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.021297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.28471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.17447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933416 SAMN22856928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.38596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.854614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.972864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933417 SAMN22856762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210316578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.383911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.214891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.955408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933418 SAMN22855663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.128714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.740355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.21848 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933419 SAMN22855662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316581/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.561147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.402501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.261921 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933420 SAMN22854347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.716173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.795852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.815891 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933421 SAMN22855231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.513681 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.243048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.88379 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933422 SAMN22854341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.289844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.190887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.992917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933423 SAMN22855230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.332508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.373566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.935767 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933424 SAMN22855229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.08884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.417725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.455946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933425 SAMN22855228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.363011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.038356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.604932 lineage/clade name AY.39.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933426 SAMN22855227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.798156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.167264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.967127 lineage/clade name AY.39.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933427 SAMN22855226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.686024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.794397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.609274 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933428 SAMN22855225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.01448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.92744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.652653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933429 SAMN22853904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.966619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.02032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.356899 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933430 SAMN22854500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316599/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.843248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.249136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.096794 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933431 SAMN22854346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.715036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.461536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.989368 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933432 SAMN22854344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.494534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.710247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.758898 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933433 SAMN22854345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.12248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.604313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.36406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933434 SAMN22853953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210311799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.36596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.868382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.551292 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933435 SAMN22857057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210311800/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.668217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.847107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.799846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933436 SAMN22855508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.077923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.38081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.312943 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933437 SAMN22855073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210312370/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.737524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.508163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.971395 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933438 SAMN22856405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210312372/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.4708605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.57906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.423971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933439 SAMN22856404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210312373/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.401682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.18721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.864801 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933440 SAMN22854483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210312371/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.205763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.653763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.851543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933441 SAMN22856403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210312374/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.170009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.61861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.803798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933442 SAMN22857056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312375/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.124076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.815578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.009908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933443 SAMN22856439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210312376/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.259304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.430958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.408689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933444 SAMN22856438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210312377/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.480224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.777853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.757519 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933445 SAMN22856679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210312378/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.83898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.441156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.1516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933446 SAMN22856157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210312379/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.948015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.386852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.172525 lineage/clade name P.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933447 SAMN22857055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.508984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.593061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.417915 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933448 SAMN22857054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.166302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.001736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.566051 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933449 SAMN22857053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.721859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.765884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.639317 lineage/clade name AY.40 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933450 SAMN22854173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312383/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.504101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.437828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.524867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933451 SAMN22853715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.87211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.546835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.189154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933452 SAMN22853714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.72417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.383213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.93398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933453 SAMN22853713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312386/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.787903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.507973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.919238 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933454 SAMN22853712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312387/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.989016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.810434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.744882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933455 SAMN22853711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312388/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.578537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.578865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.546759 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933456 SAMN22853710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312389/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.842649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.193084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.825035 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933457 SAMN22853709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312390/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.510368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.63977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.566422 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933458 SAMN22853867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210311801/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.641376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.207972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.646513 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933459 SAMN22855507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210311803/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.97582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.383585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.132242 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933460 SAMN22854603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210312394/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.8325815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.335926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.186932 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933461 SAMN22854604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210312393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.861456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.115583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.68627 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933462 SAMN22857230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210312395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.229649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.439451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.908932 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933463 SAMN22856352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.762302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.591146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.386171 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933464 SAMN22856353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.92645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.963509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.560652 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933465 SAMN22857052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.736088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.139067 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.910929 lineage/clade name A BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933466 SAMN22855732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314925/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.98469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.442394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.824229 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933467 SAMN22854391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314927/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.532845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.307247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.438227 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933468 SAMN22854389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.430027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.72915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.718752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933469 SAMN22854390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.401344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.443998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.13464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933470 SAMN22856130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314930/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.965722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.125316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.616731 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933471 SAMN22855122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210314931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.11525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.102196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.089766 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933472 SAMN22854401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314906/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.333562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.933104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.672929 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933473 SAMN22854399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314908/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.592626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.211386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.493673 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933474 SAMN22854400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314907/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.895061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.756394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.148794 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933475 SAMN22854398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314909/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.391672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.670507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.891516 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933476 SAMN22856649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210314910/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.40058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.225819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.068666 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933477 SAMN22854386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314934/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.296462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.920889 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.55991 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933478 SAMN22854385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314935/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.6392198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.418574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.741778 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933479 SAMN22857262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210314948/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.489462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.760244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.293839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933480 SAMN22856012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210314949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.895683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.996994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.796806 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933481 SAMN22854591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210314951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.211098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.433031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.349545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933482 SAMN22854645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210338494/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.369292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.504582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.112018 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933483 SAMN22855473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338495/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.362348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.273529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.168326 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933484 SAMN22856237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338497/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.681131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.261955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.884447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933485 SAMN22857251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210338496/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.451395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.138134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.843039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933486 SAMN22854029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338498/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.936186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.811082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.780411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933487 SAMN22854313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338475/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.242632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.356628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.933767 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933488 SAMN22855087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210338687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.137615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.629623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.99999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933489 SAMN22854312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338476/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.983741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.914808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.384482 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933490 SAMN22856417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.241565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.513741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.970268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933491 SAMN22854311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338477/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.344606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.812231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.790823 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933492 SAMN22855398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210338692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.414717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.933666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.814537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933493 SAMN22855983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210338694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.49932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.703732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.41963 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933494 SAMN22857279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210338695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.345404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.299252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.962923 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933495 SAMN22854306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.726812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.195644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.585417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933496 SAMN22854999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210338693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.123901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.99056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.044064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933497 SAMN22855982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210338700/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.161708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.144621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.779704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933498 SAMN22854305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.955582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.942768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.63069 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933499 SAMN22856416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.104338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.655342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.5235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933500 SAMN22857141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.191435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.208921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.943958 lineage/clade name AY.39.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933501 SAMN22857140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.572612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.857583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.643278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933502 SAMN22857139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.217286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.946265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.595745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933503 SAMN22857138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338706/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.975185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.707245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.791252 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933504 SAMN22855472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.148614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.742456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.984378 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933505 SAMN22857137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.69708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.436588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.78848 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933506 SAMN22853985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341277/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.319996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.754328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.804919 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933507 SAMN22856534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341278/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.22202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.361656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.37411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933508 SAMN22855897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.850126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.369907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.212751 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933509 SAMN22854247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.756254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.630617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.389545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933510 SAMN22854248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.265715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.99077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.053429 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933511 SAMN22854492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210341405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.944725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.233715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.356258 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933512 SAMN22854491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210341406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.897972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.154451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.85948 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933513 SAMN22856192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.915236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.822651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.982044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933514 SAMN22856193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.722294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.634956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.76761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933515 SAMN22854985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210341409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.472211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.681341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.568071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933516 SAMN22854984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210341410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.9242864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.2981415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.688613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933517 SAMN22855097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210341411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.484964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.166357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.478867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933518 SAMN22856805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.577778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.48808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.961992 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933519 SAMN22856804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.882467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.27543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.319298 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933520 SAMN22856803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.767045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.873471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.830121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933521 SAMN22855895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.114187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.405704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.931763 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933522 SAMN22855894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.86578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.480143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.36016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933523 SAMN22856191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.221851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.516815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.934986 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933524 SAMN22856533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341397/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.738466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.411587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.165562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933525 SAMN22856532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.741863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.657215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.609558 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933526 SAMN22856190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.244946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.277501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.802957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933527 SAMN22856189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.30338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.17715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.687675 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933528 SAMN22856531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.786884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.12682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.503027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933529 SAMN22856188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.979448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.55653 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.50401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933530 SAMN22856187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.359249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.29716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.758673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933531 SAMN22855891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.819745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.250974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.777046 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933532 SAMN22855890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.00796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.819641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.821991 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933533 SAMN22855889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.73862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.651863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.175613 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933534 SAMN22856724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210341434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.450102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.736698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.30049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933535 SAMN22853982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.186469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.222165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.464899 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933536 SAMN22853981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.326886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.509435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.406911 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933537 SAMN22853980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341437/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.619583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.69463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.195091 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933538 SAMN22856445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210310460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.97765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.621956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.695724 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933539 SAMN22854201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.828694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.965941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.979801 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933540 SAMN22856373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.96011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.378958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.46043 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933541 SAMN22854199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.472486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.569586 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.349094 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933542 SAMN22854198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.55935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.141891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.835611 lineage/clade name B.1.240 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933543 SAMN22854197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.725546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.703701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.90855 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933544 SAMN22854196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.239605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.644762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.842388 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933545 SAMN22853880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210310528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.885698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.44432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8581705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933546 SAMN22855131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210310531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.419624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.540545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.597612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933547 SAMN22854195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.222519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.351797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.907717 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933548 SAMN22855130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210310532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.973879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.731878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.705795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933549 SAMN22854194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.04106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.814493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.035734 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933550 SAMN22856504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210310515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.151818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.521329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.539877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933551 SAMN22855534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.632786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.231133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.318205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933552 SAMN22856374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.125615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.202424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.270522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933553 SAMN22854200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.455541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.683547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.53858 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933554 SAMN22855132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210310521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.40148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.028692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.126543 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933555 SAMN22854193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.166992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.79888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.432108 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933556 SAMN22855438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210310541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.57674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.905264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.44758 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933557 SAMN22857239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.501392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.450091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.821519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933558 SAMN22857238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.85477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.259113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.836376 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933559 SAMN22857237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.818935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.597208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.316745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933560 SAMN22857236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210310545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.523792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.36218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.973109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933561 SAMN22854192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.288733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.855347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.640878 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933562 SAMN22854191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.859262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.927656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.296646 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933563 SAMN22854659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210310550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.946424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.25345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.143944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933564 SAMN22856692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210310551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.141819 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.462708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.91279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933565 SAMN22857069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.772638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.791172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.176153 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933566 SAMN22855093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210310559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.613251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.727943 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.436008 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933567 SAMN22857269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210310820/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.849624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.657953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.6800566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933568 SAMN22854436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210310822/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.037085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.185022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.342492 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933569 SAMN22855092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210310560/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.012573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.973932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.705665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933570 SAMN22857178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316268/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.862307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.29783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.721682 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933571 SAMN22857177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316269/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.56482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.81469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.061714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933572 SAMN22857176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316270/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.522608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.533945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.420973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933573 SAMN22856623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316271/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.50791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.827293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.068928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933574 SAMN22853831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316272/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.155434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.80758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.45496 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933575 SAMN22857175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316273/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.359464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.480831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.899078 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933576 SAMN22857173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316275/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.342207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.862367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.926715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933577 SAMN22857174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316274/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.257806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.48878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.438549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933578 SAMN22856629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316250/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.361807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.413984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.203588 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933579 SAMN22856628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316251/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.625198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.942856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.31331 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933580 SAMN22857169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316281/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.883133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.169956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.04719 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933581 SAMN22856622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316282/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.1034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.525997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.960819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933582 SAMN22856298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316283/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.53898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.689997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.578554 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933583 SAMN22856297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316284/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.418927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.764343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.418503 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933584 SAMN22856008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316285/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.008795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.355116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.315453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933585 SAMN22856007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316286/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.339577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 7.024199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 6.527675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933586 SAMN22854805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316287/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.357561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.607529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.554901 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933587 SAMN22854804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316288/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.487204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.782984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.26554 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933588 SAMN22854803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316289/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.724236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.476097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.35829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933589 SAMN22854802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.914284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.348482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.23685 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933590 SAMN22854801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316291/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.325525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.504563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.520189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933591 SAMN22856621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316293/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.033205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.499134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.421108 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933592 SAMN22854800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316292/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.838888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.912937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.808895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933593 SAMN22856620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316294/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.827424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.081041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.213431 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933594 SAMN22856619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316295/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.634535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.890373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.97047 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933595 SAMN22856296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316297/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.384212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.2544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.782557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933596 SAMN22853830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316299/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.726957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.636733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.27188 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933597 SAMN22853829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316300/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.2862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.444643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.892769 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933598 SAMN22853828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.164352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.490499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.086557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933599 SAMN22854799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.195938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.042936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.220316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933600 SAMN22857172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316276/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.961613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.4032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.757006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933601 SAMN22855471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.665762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.249853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.756292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933602 SAMN22857171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316279/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.390606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.62604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.208696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933603 SAMN22855470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.985895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.168806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.529812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933604 SAMN22856415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.900856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.56679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.315413 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933605 SAMN22854304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.551157 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.616474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.09572 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933606 SAMN22854303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.799606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.83727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.480255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933607 SAMN22855985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210338688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.538641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.53292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.409979 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933608 SAMN22855984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210338689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.524329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.878413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.55481 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933609 SAMN22856074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210338718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.53378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.544182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.346 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933610 SAMN22856073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210338719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.986923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.655622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.239397 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933611 SAMN22857136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.247295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.786864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.068844 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933612 SAMN22857135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210338721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.531624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.752329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.14561 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933613 SAMN22853780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.500557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.34703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.34977 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933614 SAMN22853779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.830493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.39433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933615 SAMN22853778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.650106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.733234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.276196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933616 SAMN22853777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.135317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.634869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.658604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933617 SAMN22855199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.915455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.82266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.656275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933618 SAMN22854028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.378044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.42026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.992483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933619 SAMN22854027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.788445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.596987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.274984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933620 SAMN22854026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.079548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.189673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.669904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933621 SAMN22854025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.038769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.367004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.235617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933622 SAMN22854024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.32518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.403652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.306615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933623 SAMN22856883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.939415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.437113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.422884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933624 SAMN22856882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.916825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.687731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.283087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933625 SAMN22856881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338734/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.4965005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.613941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.394003 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933626 SAMN22855469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.437723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.50759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.416131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933627 SAMN22855468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.468155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.503784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.951276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933628 SAMN22855467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.285565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.63027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.717701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933629 SAMN22854302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.302615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.515567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.39868 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933630 SAMN22854301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.117735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.630299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.220625 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933631 SAMN22854300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.202835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.383043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.901089 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933632 SAMN22854728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.485363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.436198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.5661745 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933633 SAMN22856743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.529575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.307238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.814451 lineage/clade name AY.29.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933634 SAMN22855425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313654/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.227373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.653038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.248936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933635 SAMN22853856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.957557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.580608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.331013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933636 SAMN22853855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313658/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.502205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.928916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.299137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933637 SAMN22854138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313659/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.360106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.74453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.398152 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933638 SAMN22854137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.244532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.799864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.257652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933639 SAMN22854843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.504608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.238652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.076207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933640 SAMN22856333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.33169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.542025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.300404 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933641 SAMN22856332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.895902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.536804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.958077 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933642 SAMN22856331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313665/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.858734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.212042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.814109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933643 SAMN22857019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313666/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.177547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.127946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.232833 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933644 SAMN22857017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313668/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.351853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.403741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.921331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933645 SAMN22857018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313667/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.738138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.385563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.226501 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933646 SAMN22857016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313669/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.406075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.817316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.113132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933647 SAMN22854928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313670/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.904417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.975042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.51029 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933648 SAMN22854927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313671/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.780809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.40376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.516887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933649 SAMN22854926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313672/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.6788645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.848636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.554437 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933650 SAMN22855278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313674/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.413776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.157028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.822937 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933651 SAMN22854925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313675/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.374815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.9436035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.794839 lineage/clade name AY.7.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933652 SAMN22854924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313677/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.001404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.589476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.096058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933653 SAMN22854842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313681/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.582639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.151031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.812819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933654 SAMN22854841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313682/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.276506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.37868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.21384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933655 SAMN22855277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313683/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.220074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.90905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.38922 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933656 SAMN22856016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313686/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.740707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.753782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.778197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933657 SAMN22856015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313687/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.21151 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5890255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.597186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933658 SAMN22856401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210313689/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.66865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.502539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.477331 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933659 SAMN22857229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313690/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.78133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.657818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.374535 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933660 SAMN22856664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313688/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.122921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.485722 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.894468 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933661 SAMN22857228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313691/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.646559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.684357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.32343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933662 SAMN22857227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313692/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.367834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.495705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.699274 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933663 SAMN22857226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313693/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.251774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.111986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.76882 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933664 SAMN22856713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210313695/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.809912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.312014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.590677 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933665 SAMN22857225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313694/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.337729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.132551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.763271 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933666 SAMN22856742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.690863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.569042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.704836 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933667 SAMN22856741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.406325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.813743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.805707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933668 SAMN22855617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338746/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.608058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.5767145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.842814 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933669 SAMN22854894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338747/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.398968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.931221 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.764639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933670 SAMN22854893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338748/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.43152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.66978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.129906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933671 SAMN22854892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.90381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.888329 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.6369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933672 SAMN22854559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210338750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.869944 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.017906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.272963 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933673 SAMN22856880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.904913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.738964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.398245 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933674 SAMN22856236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338752/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.148339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.799648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.813001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933675 SAMN22856879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.460787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.307648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.709297 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933676 SAMN22854023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.89919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.404945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.868549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933677 SAMN22856740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.695118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.531618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.938866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933678 SAMN22853888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210338758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.858532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.536758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.037132 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933679 SAMN22853886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210338760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.729055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.477194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.717667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933680 SAMN22855198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.5132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.642573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.751998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933681 SAMN22853887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210338759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.57031 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.460181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.27177 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933682 SAMN22854299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.104408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.818201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.01688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933683 SAMN22854298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.273879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.8416815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.76054 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933684 SAMN22854730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.297695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.240358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.51993 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933685 SAMN22854729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.30773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.86831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.21438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933686 SAMN22854294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.92508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.477982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.869038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933687 SAMN22854292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.73049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.152868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.766339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933688 SAMN22854293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.342349 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.892284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.293738 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933689 SAMN22854290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.48995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.641659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.437853 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933690 SAMN22854291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.81455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.988937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.893078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933691 SAMN22854289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.855743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.154398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.721657 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933692 SAMN22854288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.778528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.385336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.192486 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933693 SAMN22854287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.326546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.26106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.374722 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933694 SAMN22856235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.492483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.310339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.95789 lineage/clade name AY.7.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933695 SAMN22856234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.175616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.290468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.105281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933696 SAMN22854998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.783722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.359324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.879399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933697 SAMN22854997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.995372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.085762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.98391 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933698 SAMN22854136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313696/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.121399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.205305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.337885 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933699 SAMN22854135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313697/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.015966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.981956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.130001 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933700 SAMN22853948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210313698/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.464838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.148397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.946548 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933701 SAMN22857015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313699/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.739542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.334956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.460836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933702 SAMN22857014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313700/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.979465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.760178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.501736 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933703 SAMN22854840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313701/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.325876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.562618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.230152 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933704 SAMN22856145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313703/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.833881 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.445227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.659145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933705 SAMN22854134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313702/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.276431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.202296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.644318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933706 SAMN22855758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313684/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.32991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.91494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.577835 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933707 SAMN22856665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313685/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.13232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.280231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.731304 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933708 SAMN22854414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313708/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.638737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.977507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.490805 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933709 SAMN22854413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313709/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.64108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.830534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.579906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933710 SAMN22854638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210313710/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.31035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.326485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.754517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933711 SAMN22854923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313711/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.046892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.615909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.137696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933712 SAMN22855757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313712/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.295933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.729898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.35214 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933713 SAMN22855756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313713/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.665324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.539066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.583399 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933714 SAMN22854133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313714/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.35532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.311808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.862922 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933715 SAMN22855276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313715/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.632025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.538916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.445343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933716 SAMN22857013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313716/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.976063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.901184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.566906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933717 SAMN22854132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313718/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.925793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.857492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.860014 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933718 SAMN22854412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313717/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.985135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.227823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.864078 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933719 SAMN22857012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313719/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.810865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.694022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.839259 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933720 SAMN22856143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313720/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.952124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.102013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.118376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933721 SAMN22856495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210313721/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.675034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.872007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.683573 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933722 SAMN22856014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.871086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.714645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.243006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933723 SAMN22855852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.702183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.54519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.564863 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933724 SAMN22855058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313679/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.462054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.552877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.554177 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933725 SAMN22854131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.330755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.058468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.590702 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933726 SAMN22855759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313680/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.892977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.44552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.613876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933727 SAMN22856144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313704/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.261002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.81194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933728 SAMN22857224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313705/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.578806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.636692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.536934 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933729 SAMN22857223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210313707/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.316822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.542475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.359522 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933730 SAMN22857170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210316280/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.765675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.288605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.19534 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933731 SAMN22855700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316305/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.200051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.400964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.40633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933732 SAMN22855699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316306/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.252111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.578676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.25192 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933733 SAMN22855698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316307/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.583915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.416298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.401875 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933734 SAMN22856295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316308/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.30901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.780361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.895302 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933735 SAMN22856294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316309/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.156624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.50488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.197577 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933736 SAMN22855245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316310/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.940273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.64274 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.501335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933737 SAMN22855967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210316311/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.855658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.464731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.777958 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933738 SAMN22853826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.541353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.323715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.500383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933739 SAMN22853827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.122845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.628116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.854955 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933740 SAMN22854798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.2758875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.746659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.6084385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933741 SAMN22854797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.83385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.50612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.242638 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933742 SAMN22855697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.959976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5313635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.851053 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933743 SAMN22856618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.479292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.318642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.665809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933744 SAMN22853825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.16111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.187305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.627308 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933745 SAMN22853824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.2344475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.42455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.913169 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933746 SAMN22853822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.177317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.25667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.462666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933747 SAMN22853823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.53338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.29048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.487854 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933748 SAMN22854578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210316324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.845083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.217501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.376444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933749 SAMN22856617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.131567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.363565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.673546 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933750 SAMN22856616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.487799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.306627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.449041 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933751 SAMN22856108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.326524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.670398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.211801 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933752 SAMN22854794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.595308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.635782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.282661 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933753 SAMN22856107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316304/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.959179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.469866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.274776 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933754 SAMN22854793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316332/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.865524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.854136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.672732 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933755 SAMN22856006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.946258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.274204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.594431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933756 SAMN22856005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.520847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.336371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.702253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933757 SAMN22856004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.752632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.55183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.53224 lineage/clade name A BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933758 SAMN22856003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.40836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.752625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.508155 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933759 SAMN22856002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316337/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.668886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.610886 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.178655 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933760 SAMN22856001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316338/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.705418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.330112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.28637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933761 SAMN22856000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.148045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.61821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.625427 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933762 SAMN22855965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210339071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.355669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.024698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.558681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933763 SAMN22857278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210339072/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.273363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.64324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.280613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933764 SAMN22857277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210339073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.236696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.235135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.600577 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933765 SAMN22857276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210339074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.64604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.965595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.438232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933766 SAMN22857275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210339075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.422934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.80126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.939649 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933767 SAMN22854297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.24561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.957703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.395279 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933768 SAMN22854296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.59087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.377747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.831711 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933769 SAMN22857134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.277119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.739975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.205072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933770 SAMN22854295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.09789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.158773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.604897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933771 SAMN22854996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.588058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.382998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.303537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933772 SAMN22855616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.306005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.94766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933773 SAMN22855615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.719872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.811085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.125822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933774 SAMN22855614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.292285 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.944013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.6779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933775 SAMN22857274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210339076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.752762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.295082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.604252 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933776 SAMN22854022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.04671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.864555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.495384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933777 SAMN22854021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.318037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.187363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.457157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933778 SAMN22856233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.38666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.832605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.51681 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933779 SAMN22856739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.231636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.800062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.443213 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933780 SAMN22854020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.184737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.684607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.523484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933781 SAMN22854019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210339090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.402704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.333054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.613533 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933782 SAMN22855102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210339091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.641865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.951382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.793535 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933783 SAMN22855612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.33861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.77699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.58798 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933784 SAMN22855611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.128412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.410196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.56761 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933785 SAMN22856230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.429849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.616496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.80753 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933786 SAMN22855197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210339093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.253496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.365108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.939604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933787 SAMN22856231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.97145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.9824915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.845502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933788 SAMN22856232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.872322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.760845 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.832678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933789 SAMN22854891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210339096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.143625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.252388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.905825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933790 SAMN22854890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210339097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.305573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.961285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.395393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933791 SAMN22854889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210339098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.579527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.523947 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.501326 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933792 SAMN22854727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339100/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.518497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.929235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.559248 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933793 SAMN22854888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210339099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.785633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.151627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.055765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933794 SAMN22855377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210341440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.20319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.984316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.864513 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933795 SAMN22853979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.317043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.938478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.488335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933796 SAMN22853736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.691324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.952023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.314402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933797 SAMN22853735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.793601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.371056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.581302 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933798 SAMN22855893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.875782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.499834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.748352 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933799 SAMN22855892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.28625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.809549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.78353 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933800 SAMN22855820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210341421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.902136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.271032 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.796394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933801 SAMN22855819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210341422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.433264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.548515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.247242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933802 SAMN22855818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210341423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.096512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.611893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.123354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933803 SAMN22853738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.016595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.417448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.667519 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933804 SAMN22853737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.575291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.265132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.626528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933805 SAMN22855175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.319902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.539108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.343826 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933806 SAMN22855174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.713698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.349218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.949224 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933807 SAMN22854694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.848044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.6195135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.302306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933808 SAMN22854693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.470635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.505854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.742613 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933809 SAMN22854691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.935548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.125559 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.135728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933810 SAMN22854692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.141226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.186324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.252103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933811 SAMN22856700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210341453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.426754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.838995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.722003 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933812 SAMN22856802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210341454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.258366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.743916 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.744444 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933813 SAMN22854690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.206926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.157548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.941426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933814 SAMN22853978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.180813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.29427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.345018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933815 SAMN22856413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210341456/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.515137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.308212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.072208 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933816 SAMN22854689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.153526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.396789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.8450575 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933817 SAMN22855445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210341459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.729162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.572306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.148058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933818 SAMN22854217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309722/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.335192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.833286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.37882 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933819 SAMN22854215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309726/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.377563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.292684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.104147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933820 SAMN22853674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210309727/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.357056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.753885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.249811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933821 SAMN22855952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210309728/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.087517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.896727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.976903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933822 SAMN22856697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210309729/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.675055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.799898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.870735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933823 SAMN22854214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309730/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.547052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.389946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.328314 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933824 SAMN22856696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210309731/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.187977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.730026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.19235 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933825 SAMN22856049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210309732/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.827533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.662755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.847238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933826 SAMN22856795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309733/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4343815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.505043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.226044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933827 SAMN22854212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309736/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.943634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.300083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.674526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933828 SAMN22856793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309738/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.241106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.909002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.150347 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933829 SAMN22854213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309735/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.371902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.839157 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.422115 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933830 SAMN22856794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309737/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.463064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.67473 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.589987 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933831 SAMN22853673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210309739/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.6507845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.360605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.245567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933832 SAMN22856792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309740/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.889767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.724212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.113489 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933833 SAMN22856512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210309741/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.893833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2828455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.774955 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933834 SAMN22857077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309742/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.07435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.761066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.533188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933835 SAMN22854211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309743/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.502088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.71451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.257488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933836 SAMN22855951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210309744/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.169548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.82831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.301094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933837 SAMN22856791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309745/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.696389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.542837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.3053665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933838 SAMN22856790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309749/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.301346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.690964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.743006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933839 SAMN22854216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309723/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.443459 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.399515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.390223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933840 SAMN22855953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210309724/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.577516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.167476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.393643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933841 SAMN22856796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210309725/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.013747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.911381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6586075 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933842 SAMN22855285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313507/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.665792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.765131 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.21211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933843 SAMN22855283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.488201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.331287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.32573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933844 SAMN22855284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.419981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.25427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.300349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933845 SAMN22855854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.32064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.61397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.678781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933846 SAMN22855855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.814087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.39852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.371607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933847 SAMN22854931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.05294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.489851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.819368 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933848 SAMN22854930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210313516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.888102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.531897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.787415 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933849 SAMN22854144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.326332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.927092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.221548 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933850 SAMN22854143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.271723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.67425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.888924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933851 SAMN22854142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.046777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.35261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.939227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933852 SAMN22854141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.39054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.821962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.646092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933853 SAMN22854856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313523/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.803516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.168394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.332796 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933854 SAMN22855932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210313524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.64702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.601612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.222622 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933855 SAMN22854855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.667677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.809425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.092375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933856 SAMN22854854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.80518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2015085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933857 SAMN22854853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.380006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.961163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.213828 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933858 SAMN22855762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.928527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.534632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.196822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933859 SAMN22855761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313504/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.335549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.494928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.365661 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933860 SAMN22854599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313533/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.198723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.481613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.941973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933861 SAMN22855357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210313536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.80761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.26841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.55118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933862 SAMN22857040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.968763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.89577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.712865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933863 SAMN22854598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313535/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.046638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.475079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.95777 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933864 SAMN22855760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.246138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.773796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.760548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933865 SAMN22855066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.52823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.210634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.99031 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933866 SAMN22857039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.141531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.841436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.95998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933867 SAMN22855065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.710222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.006655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.91412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933868 SAMN22855968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210313542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source NP Swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.796011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.654263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.011961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933869 SAMN22854140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.658093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.169974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.678066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933870 SAMN22855809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210313544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.232186 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.277436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.426159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933871 SAMN22857266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210313545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.50542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.941738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.844816 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933872 SAMN22854852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.748236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.463455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.694475 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933873 SAMN22854851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210313547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.264875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.282763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.52916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933874 SAMN22856303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.488323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.130861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.545701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933875 SAMN22856972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316091/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.649239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.943284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.468889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933876 SAMN22855042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316092/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.775087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.206862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.20519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933877 SAMN22853701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210316094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.559853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.929353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.742949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933878 SAMN22853702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210316093/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.346851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.521246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.709444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933879 SAMN22855840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210316095/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.519379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.692223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.167692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933880 SAMN22855839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210316096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.971882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.59726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.878073 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933881 SAMN22856427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210316097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.7190485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.69955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.59866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933882 SAMN22856426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210316098/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.597411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.440425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.686776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933883 SAMN22854807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210316099/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.939035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.7391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.554258 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933884 SAMN22854916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210316101/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.33837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.833551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.033377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933885 SAMN22854915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210316102/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.250189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.17146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.975452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933886 SAMN22857248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210316104/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.504879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.352972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.841806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933887 SAMN22856305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.44463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.66495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.970488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933888 SAMN22856304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.245666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.570879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.485489 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933889 SAMN22856302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210316108/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.78467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.626269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.974251 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933890 SAMN22855489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210316109/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.458471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.660123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.726638 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933891 SAMN22856971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316110/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.937057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.752986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.629361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933892 SAMN22856970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316111/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.411251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.79844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.81728 lineage/clade name AY.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933893 SAMN22856710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210316113/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.939625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.111635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.614315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933894 SAMN22856709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210316114/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.000083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.4082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.710387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933895 SAMN22856969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316112/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.761665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.506775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.235542 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933896 SAMN22856115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316115/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.883869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.869456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.552512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933897 SAMN22856114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316116/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.020638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.868328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.678476 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933898 SAMN22856113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316117/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.603145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.074257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.792843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933899 SAMN22856112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316118/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.633595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.256203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.16882 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933900 SAMN22856111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316119/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.804136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.712484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.66247 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933901 SAMN22856110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210316120/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.391598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.36021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.80401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933902 SAMN22853838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316121/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.673655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.766964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.822842 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933903 SAMN22853837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316122/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.852728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.407374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.343522 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933904 SAMN22853836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316124/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.943773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.189676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.185064 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933905 SAMN22856646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316126/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.645254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.668554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.476892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933906 SAMN22855629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.603033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.726599 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.004805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933907 SAMN22855628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.808866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.417536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.195964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933908 SAMN22855627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338031/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.687495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.287007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.755607 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933909 SAMN22854038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338032/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.979406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.869177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.45321 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933910 SAMN22854327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.324177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.845522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.654135 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933911 SAMN22854326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.136193 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.566285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.750432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933912 SAMN22854037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.733094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.77288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.92854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933913 SAMN22856243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338037/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.59778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.815413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.218096 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933914 SAMN22854325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338038/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.172213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.494186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.727468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933915 SAMN22854324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.684027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.725637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.803009 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933916 SAMN22854322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.98975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.940052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.314173 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933917 SAMN22854323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.846142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.088425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.462198 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933918 SAMN22854321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.678034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.24086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.553448 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933919 SAMN22854320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.986412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.37555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.730354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933920 SAMN22854319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.811523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.764444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.302748 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933921 SAMN22856422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210338022/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.187145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.857846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.571535 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933922 SAMN22854736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338023/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.419366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.346933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.677437 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933923 SAMN22854315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338053/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.5069275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.903801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.931166 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933924 SAMN22855626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338055/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.518528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.373405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.907309 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933925 SAMN22855625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.638806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.894508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.262011 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933926 SAMN22855624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338058/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.11773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.122843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.930943 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933927 SAMN22854494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210338059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.5668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.949427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.846617 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933928 SAMN22853784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.584812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.421466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.544732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933929 SAMN22853783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.734586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.844936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.2088995 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933930 SAMN22853782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210338062/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.606071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.75864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.580877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933931 SAMN22855623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.445311 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.289944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.680644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933932 SAMN22855622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210338064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.919083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.391326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.284825 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933933 SAMN22854901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.7424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.506762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.162064 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933934 SAMN22854900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210338066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.692613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.428592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.179487 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933935 SAMN22856077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210338067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.782139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.865725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.579067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933936 SAMN22856242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.100179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.47427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.874693 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933937 SAMN22855474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210338069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.856715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.367906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.492584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933938 SAMN22853885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210340975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.58897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.538923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.260162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933939 SAMN22855574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.903599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.766308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.435921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933940 SAMN22856202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.366093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.472431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.785063 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933941 SAMN22856201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.907188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.727028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.923937 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933942 SAMN22854699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.97354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.511642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.934237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933943 SAMN22854698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.924707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.023674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.549788 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933944 SAMN22854697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210340981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.483694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.68678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.477894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933945 SAMN22856538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.35979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.99989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.760967 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933946 SAMN22856822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.448378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.16604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.934977 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933947 SAMN22854255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.766533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.4503145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.315878 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933948 SAMN22854254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.066906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.760704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.444585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933949 SAMN22854253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.154337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.775417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.04373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933950 SAMN22855448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.16885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.235057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.059914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933951 SAMN22855821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.268493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.795577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.333068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933952 SAMN22855900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210340988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.090303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.782843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.327158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933953 SAMN22855899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210340989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.581268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.1148405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.5148735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933954 SAMN22853743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.538559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.778793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.303524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933955 SAMN22853742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.836835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.75067 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.303168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933956 SAMN22853741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210341197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.973543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.555876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.98168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933957 SAMN22855972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210341198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.277187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.7805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.164442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933958 SAMN22855898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210341199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.228209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.495129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.375599 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933959 SAMN22855380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210341200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.2780485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.945547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.973933 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933960 SAMN22855379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210341201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.276615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.57194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.616398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933961 SAMN22853987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.983934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.758675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.29138 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933962 SAMN22856200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.601677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.492863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.889708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933963 SAMN22855179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.674548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.66149 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.556043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933964 SAMN22857095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.2168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.163212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.485569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933965 SAMN22857094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.780361 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.494144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.561945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933966 SAMN22857093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.882986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.960989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.637684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933967 SAMN22857092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.684918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.577648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.3013735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933968 SAMN22857091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.635008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5891905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.590087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933969 SAMN22856199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.998181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.183942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.875835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933970 SAMN22854209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309754/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.50977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.395749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.92538 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933971 SAMN22857076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309755/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.909857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.507694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.21403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933972 SAMN22857075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210309757/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.863356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.552942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4411955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933973 SAMN22854208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309756/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.702913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.703667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.2873 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933974 SAMN22854207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309758/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.143658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.623728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.43118 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933975 SAMN22854977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210309759/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.69403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.316723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.9569 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933976 SAMN22856510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210309760/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.400835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.168936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.594786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933977 SAMN22855322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210309761/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.863884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.516691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.662443 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933978 SAMN22855950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210309762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.2040825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.794436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.978236 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933979 SAMN22854976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210309763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.376154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.69534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.401781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933980 SAMN22855868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210309765/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.572067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.5721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.399277 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933981 SAMN22854975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210309764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.704888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.522285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.358173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933982 SAMN22855321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210309766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.432621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.952262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.863329 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933983 SAMN22855949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210309767/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.420214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.587709 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.276548 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933984 SAMN22855867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210309768/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.971827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.654104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.99823 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933985 SAMN22857272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210309769/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.33247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.971636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.154564 lineage/clade name B.1.459 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933986 SAMN22854619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210309770/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.80123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.324306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.244509 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933987 SAMN22857271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210309772/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.389737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.167202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.882564 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933988 SAMN22856704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210309773/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.636758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.202526 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.772652 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933989 SAMN22855135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210309771/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.43845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.693648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.506063 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933990 SAMN22854210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210309750/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.929584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.67448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.443957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933991 SAMN22856511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210309753/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.586988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.163225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.160725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933992 SAMN22856509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210309778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.608137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.347451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.322676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933993 SAMN22855134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210309779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.959708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.742806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.057882 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933994 SAMN22855782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210309780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.98857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.726346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.648914 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933995 SAMN22856508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210309781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.595067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.701502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.238898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933996 SAMN22855781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210309783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.281277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.91876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.506092 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933997 SAMN22857270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210309785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.302444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.813785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.400075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933998 SAMN22855866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210309786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.677898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.859396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.840286 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10933999 SAMN22856695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210309787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.297047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.584795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.546888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934000 SAMN22854451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210309788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.439708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.648447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.06083 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934001 SAMN22856048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210309789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.132124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.59838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.193962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934002 SAMN22856019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313548/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.7336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.56341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.429663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934003 SAMN22856018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.681224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.993965 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.505182 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934004 SAMN22856017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210313550/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.826141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.28485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.994344 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934005 SAMN22853862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.948084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.550083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.561522 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934006 SAMN22856338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.93108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.39159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.691651 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934007 SAMN22855431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313529/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.904862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.776139 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.134389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934008 SAMN22854602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.242972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.815122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.422546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934009 SAMN22854601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.846262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.468058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.95097 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934010 SAMN22854600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313532/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.619541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.137766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.529581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934011 SAMN22853860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.491937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.7739105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5371275 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934012 SAMN22853861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210313552/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.539355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.86936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.720255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934013 SAMN22855501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210313555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.153852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.559906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.203453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934014 SAMN22857037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.722319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.277515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.59643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934015 SAMN22857038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.7888975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.221215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.425027 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934016 SAMN22857036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.808012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.85952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.790173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934017 SAMN22854597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.645182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.661114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.929218 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934018 SAMN22854596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.248298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.854464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.890564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934019 SAMN22855503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210313553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.043618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.407938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.863307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934020 SAMN22855502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210313554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.800406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.395897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.766415 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934021 SAMN22854595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.799448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.81713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.449896 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934022 SAMN22857034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313584/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.666887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.756464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.235119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934023 SAMN22857033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.572245 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.705424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.074431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934024 SAMN22857032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.291075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.524471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.289114 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934025 SAMN22856148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.740733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.645659 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.7502985 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934026 SAMN22856146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313589/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.729053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.104021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.258831 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934027 SAMN22856334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313592/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.856617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.333178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.950731 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934028 SAMN22856147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.940298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.756006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.652891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934029 SAMN22855064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.660824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.451788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.460804 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934030 SAMN22854594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313565/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.398542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.674738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.873368 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934031 SAMN22854593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210313566/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.439562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.920834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.793945 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934032 SAMN22856337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.643872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.1016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.172284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934033 SAMN22855853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210313569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.715193 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.512805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.885893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934034 SAMN22855488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210316127/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.180789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.888553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.192596 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934035 SAMN22856645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316129/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.413634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.673906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.410786 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934036 SAMN22856486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316128/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.02297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.3345585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.905568 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934037 SAMN22855705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210316105/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.491306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.934953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.267715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934038 SAMN22856647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316106/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.512846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.092117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.391247 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934039 SAMN22854075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210316107/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.854493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.572124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.215891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934040 SAMN22856010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.945981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.605015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.720032 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934041 SAMN22856968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.904596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.766302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.940222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934042 SAMN22856967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.650599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.878227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.759014 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934043 SAMN22856966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.176105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.314362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.364494 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934044 SAMN22856009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.507139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.556284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.771236 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934045 SAMN22856965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.530228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.516909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.089123 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934046 SAMN22854383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.735203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.303689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.801378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934047 SAMN22854382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.424908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.498286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.591684 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934048 SAMN22856964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.423462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.41111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934049 SAMN22854381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.81998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.17592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.609682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934050 SAMN22856643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.594464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.89337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.13502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934051 SAMN22856642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.531761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.11706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.761478 lineage/clade name B.1.466.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934052 SAMN22855041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316145/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.362402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.75734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.178047 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934053 SAMN22856963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210316146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.46493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.599014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.289126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934054 SAMN22855040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210316147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.417965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.508278 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.190413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934055 SAMN22854380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.624277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.507581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2193985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934056 SAMN22854379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.774075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.50657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.367039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934057 SAMN22854378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.373279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.367574 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.239941 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934058 SAMN22856644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316130/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.290668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.369394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.774508 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934059 SAMN22856485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210316131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.986818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.925539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.92687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934060 SAMN22856641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.908094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.584048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.599995 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934061 SAMN22856640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.473436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.287489 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.586565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934062 SAMN22856639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316158/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.666498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.983035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.308946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934063 SAMN22856638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.982842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.945085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.13567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934064 SAMN22853835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210316160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.973709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.212134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.042248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934065 SAMN22856637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210316161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.928808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.34777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.820852 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934066 SAMN22855208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.433296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.579287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.036385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934067 SAMN22856076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210338071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.884458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.300214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.733011 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934068 SAMN22856575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210338074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.711502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.291164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.632083 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934069 SAMN22856889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.266763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.815091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.949913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934070 SAMN22856888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.598867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.476803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.190372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934071 SAMN22854318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.638251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.831035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.96849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934072 SAMN22854316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.338385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.033882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.523743 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934073 SAMN22854317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210338048/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.028616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.827124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.228449 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934074 SAMN22855103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210338080/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.240225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.950819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.043525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934075 SAMN22856746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.00632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.222953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.3990135 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934076 SAMN22856745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210338084/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.168908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.623942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.840273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934077 SAMN22855207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.260387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.883842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.180693 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934078 SAMN22856887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210338087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.717987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.62266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.700314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934079 SAMN22855206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338086/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.659342 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.878903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.721699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934080 SAMN22854036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.090368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.276384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.763422 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934081 SAMN22856241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.562601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.756252 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.68747 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934083 SAMN22854733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338380/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.962829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.922883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.685496 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934084 SAMN22854732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210338381/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.511802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.996791 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.615959 lineage/clade name AY.38 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934085 SAMN22856240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338382/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.151093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.029879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.892313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934086 SAMN22855401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210338384/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.29624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.392729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.170622 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934087 SAMN22856239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210338385/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.977134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.74031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.557739 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934088 SAMN22855205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338393/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.953522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.736591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.581182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934089 SAMN22855204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210338395/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.189878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.728552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.496635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934090 SAMN22854035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338398/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.929571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.453648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.21452 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934091 SAMN22854034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.201842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.732205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.376486 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934092 SAMN22854033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.602362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.89975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.500627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934093 SAMN22854032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210338401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.253803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.694874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.546234 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934094 SAMN22855795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210338078/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.357098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.24115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.64737 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934095 SAMN22855104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210338079/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.991225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.102564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.98659 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934096 SAMN22855339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.76037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.621875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.990555 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934097 SAMN22855338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210338406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.20153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.289738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.81043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934098 SAMN22855450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.187439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.742549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.340494 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934099 SAMN22855449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340985/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.105171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.689386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.514473 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934101 SAMN22855573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341216/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.713824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.975547 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934102 SAMN22855571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341218/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.805344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.935194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.6144 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934103 SAMN22856059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210341219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.369107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.459027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.801393 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934082 SAMN22855986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210338094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.789145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.040036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.181646 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934100 SAMN22855572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.489471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.489224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.7554865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934104 SAMN22853986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210341220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.768446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.382978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.77228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934105 SAMN22856537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341224/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.772215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.773464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.484873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934106 SAMN22856058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210341222/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.269266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.016127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.64578 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934107 SAMN22856536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341225/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.186296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.561855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2212105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934108 SAMN22855178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210341226/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.50707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.159796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.708832 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934109 SAMN22856458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210341227/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.129973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.043966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.008904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934110 SAMN22854249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210341229/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.53385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.934542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.174194 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934111 SAMN22855378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210341236/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.155521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.223173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.768488 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934112 SAMN22855569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.87518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.885906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.63288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934113 SAMN22855570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341239/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.180001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.8796215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.4458275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934114 SAMN22857090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341248/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.139845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.703398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.605727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934115 SAMN22855568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210341243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.081299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.73122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.498487 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934116 SAMN22857089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210341249/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.993171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.232856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.958481 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934117 SAMN22856198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.54241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.912004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.648916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934118 SAMN22854493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210341252/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.515469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.748058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.74575 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934119 SAMN22856197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.999987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.990116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.4678335 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934120 SAMN22854624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210341215/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.659526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.377498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.158619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934121 SAMN22856195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341255/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.441076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.064209 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.899271 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934122 SAMN22856194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210341256/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.365013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.611425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.016914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934123 SAMN22856535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210341258/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.176703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.9362955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.463125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934124 SAMN22856057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210341259/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.54217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.318432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.639027 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934125 SAMN22854548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210341262/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.833252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.337074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.994583 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934126 SAMN22854547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210341263/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.257195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.239135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.234133 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934127 SAMN22854546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210341264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.954758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.95082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.585926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934128 SAMN22854696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341266/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.648527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.548897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.722084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934129 SAMN22854695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210341267/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.314516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.592803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.581489 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934130 SAMN22855440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210309792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.497011 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.582108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.067352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934131 SAMN22854206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.576675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.44641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.93713 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934132 SAMN22855082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210310069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.280325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.312223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.893019 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934133 SAMN22857074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210310070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.533092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.616468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.428149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934134 SAMN22856378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.323017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.356112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.628815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934135 SAMN22856377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210310075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.914056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.332757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.780917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934136 SAMN22854205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.362806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.143017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.0885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934137 SAMN22856032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210310076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.853498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.674389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.300093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934138 SAMN22854516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210309774/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.963576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.963656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.945917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934139 SAMN22855783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210309775/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.131767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.564905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.93172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934140 SAMN22855320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210309777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.221676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.279879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.368624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934141 SAMN22854204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210310082/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.82919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.821563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.359666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934142 SAMN22853928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210310083/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.191832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.878231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.227715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934143 SAMN22855319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210310081/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.89121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.192421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.808582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934144 SAMN22855546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310085/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.408705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.293573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.419416 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934145 SAMN22855948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210310087/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.765902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.635963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.598467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934146 SAMN22855545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310088/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.188898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.479143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.457685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934147 SAMN22853927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210310089/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.016588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.475651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.641806 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934148 SAMN22855318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210310094/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.238886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.517416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.87135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934149 SAMN22855544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210310096/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.09116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.483126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.228125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934150 SAMN22855441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210309790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.350914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.713751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.276733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934151 SAMN22855811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210310090/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.48718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.398585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.358885 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934152 SAMN22855133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210309791/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.082634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.753334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.761744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934153 SAMN22855947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210310097/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.922657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.675634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.320543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934154 SAMN22855974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.48262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.938944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.568733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934155 SAMN22855973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210339971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.282934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.151232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.368504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934156 SAMN22854989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339975/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.425428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.508219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.011303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934157 SAMN22854991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.269592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.579449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.948568 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934158 SAMN22854990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210339974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.742865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.452827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.04051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934159 SAMN22854709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.287718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.420483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.32439 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934160 SAMN22855586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.132032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.884413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.300365 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934161 SAMN22857109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339952/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.286999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.636097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.981392 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934162 SAMN22857108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339953/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.930672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.25881 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.576487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934163 SAMN22855585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.776912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.781423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.80545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934164 SAMN22857107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.553807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.575083 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.625837 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934165 SAMN22857105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.810199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.376523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.383529 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934166 SAMN22857104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.758324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.363642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.261787 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934167 SAMN22857103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.860406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.457178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.209642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934168 SAMN22853759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.188427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.926105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.090942 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934169 SAMN22856210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.408281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.697403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.258705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934170 SAMN22853760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339985/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.362943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.60733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.641808 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934171 SAMN22856209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.553059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.308094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.996624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934172 SAMN22856062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210339994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.720325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.456612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.086953 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934173 SAMN22857102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.56215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.399088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.74661 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934174 SAMN22853758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.9669695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.553092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.392194 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934175 SAMN22853756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.0278425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.316067 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.989345 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934176 SAMN22853757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.081401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.597939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.708633 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934177 SAMN22853755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.519907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.581661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.90214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934178 SAMN22856168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210201508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.533564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.988226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.76782 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934179 SAMN22854236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210201509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.566486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.347292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.88898 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934180 SAMN22856800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210201510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.452215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.570122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.156301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934181 SAMN22853723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210201511/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.71417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.538326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.741692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934182 SAMN22855872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210201512/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.542793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.879055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.087212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934183 SAMN22856799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210201513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.901508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.356754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.537113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934184 SAMN22855791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210201515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.853371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.27993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.167393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934185 SAMN22855792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210201514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.837725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.305644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.776488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934186 SAMN22856167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210201516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.767702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.127895 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.740192 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934187 SAMN22855871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210201518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.325155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.464535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.260948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934188 SAMN22855790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210201517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.908758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.07676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.458288 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934189 SAMN22856383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210201519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.949673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.897036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.677626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934190 SAMN22857247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210307314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.3913913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.303445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.560733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934191 SAMN22853929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210201520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.487637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.382405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.750218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934192 SAMN22856798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210307320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.924725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.98229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.93766 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934193 SAMN22856522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210307325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.90717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.625708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.362816 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934194 SAMN22856521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210307326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.025906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.74135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.781036 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934195 SAMN22856797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210307324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.79233 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.710459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.234851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934196 SAMN22856520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210307327/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.325867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.447054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.777681 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934197 SAMN22855789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210307328/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.773392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.22147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.47537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934198 SAMN22855086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210307329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.172606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.954395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.985725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934199 SAMN22856452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210307330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.32595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.308537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.842662 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934200 SAMN22855971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210307334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.875968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.843087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.523444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934201 SAMN22856451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210307331/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.804462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.986187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.27383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934202 SAMN22855963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210307335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.837954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.408581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.910078 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934203 SAMN22857083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210307336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.948706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.171762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.096748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934204 SAMN22855962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210307337/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.40774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.75086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.197832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934205 SAMN22856382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210307339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.187031 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.915076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.847562 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934206 SAMN22856034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210307338/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.46573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.548485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.406511 lineage/clade name AY.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934207 SAMN22856450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210308600/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.147957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.012842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.121956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934208 SAMN22855786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210308597/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.854898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.691034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.970167 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934209 SAMN22855785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210308598/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.66315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.831526 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.654644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934210 SAMN22855069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313290/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.566259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.702343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.093136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934211 SAMN22855294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.416742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.790142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.02316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934212 SAMN22855293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313444/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.512727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.338765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.429227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934213 SAMN22857041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210313445/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.232051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.38977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.779394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934214 SAMN22855934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210313447/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.818367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.308641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.660902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934215 SAMN22855935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210313446/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.26017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.401146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.291046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934216 SAMN22855933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210313448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.114761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.421969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.915477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934217 SAMN22855292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.839364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.744524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.849811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934218 SAMN22855291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.63303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.3954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934219 SAMN22855290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313451/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.458813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.894629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.372774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934220 SAMN22855289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313452/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.084955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.49185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.06474 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934221 SAMN22855432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210313454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.5725765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.686773 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.55332 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934222 SAMN22855288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.289959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.368807 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.965874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934223 SAMN22855768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313301/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.714216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.226408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.00193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934224 SAMN22855767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313302/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.975907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.912723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.270843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934225 SAMN22855301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313303/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.30567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.511303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.05841 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934226 SAMN22855068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210313396/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.580072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.366272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.805406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934227 SAMN22855300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.006987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.414614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.464233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934228 SAMN22855296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.860302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.0833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.734682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934229 SAMN22855295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.610056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.848188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.469136 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934230 SAMN22855297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210313438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.539205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.385627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.003496 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934231 SAMN22856341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.736382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.505308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.038918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934232 SAMN22856340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210313459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.234922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.503742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.712614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934233 SAMN22856433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210313460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.742044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.716856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.532999 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934234 SAMN22857249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210313461/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.832977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.678364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.364538 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934235 SAMN22854149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210313465/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.993959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.807175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.39818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934236 SAMN22856150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313464/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.841743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.20511 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.916308 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934237 SAMN22855766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210313462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.889299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.508854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.143695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934238 SAMN22856149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210313466/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.497729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.282484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.859178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934239 SAMN22854417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313468/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.473066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.72702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.315176 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934240 SAMN22854416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210313469/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.752572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.341378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.778243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934241 SAMN22856669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210313470/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.491988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.720714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.493666 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934242 SAMN22853788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337763/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.3108425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.326364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.744437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934243 SAMN22854745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337762/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.428536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.862317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.5182 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934244 SAMN22854328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210337764/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.456512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.371826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.286524 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934245 SAMN22855635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337766/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.442519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.996169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.550899 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934246 SAMN22855914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.776977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.443095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.100923 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934247 SAMN22854495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210337786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.368965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.560917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.03493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934248 SAMN22855008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.871244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.30787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.826849 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934249 SAMN22855007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337789/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.848293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.356724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.10693 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934250 SAMN22855835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210337790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.004663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.331207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.115793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934251 SAMN22857254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210337792/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.703699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.382268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.5357895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934252 SAMN22857255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210337791/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.746347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.497961 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.192072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934253 SAMN22856903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.605984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.183464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.711834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934254 SAMN22856902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.472111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.486498 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.335689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934255 SAMN22857256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210337783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.720922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.251137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.62716 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934256 SAMN22854904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.393658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.606084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.894401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934257 SAMN22856082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337900/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.637632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.653705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.336662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934258 SAMN22853785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.957552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.424816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.713871 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934259 SAMN22855475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210337797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.990406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.417451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.486851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934260 SAMN22855006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337798/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.887391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.755197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.147223 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934261 SAMN22855005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.956005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.846049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.48707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934262 SAMN22855004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337800/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.050596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.952102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.900912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934263 SAMN22856083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337899/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.414873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.409723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.184662 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934264 SAMN22857147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337905/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.812588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.681028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.333776 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934265 SAMN22856080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337902/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.237267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.560139 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.95153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934266 SAMN22856081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337901/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.42337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.204668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.740395 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934267 SAMN22856398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337908/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.183088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.321775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.90613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934268 SAMN22856466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337909/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.770967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.638512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.904488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934269 SAMN22856580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337910/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.51545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.815132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.984797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934270 SAMN22856900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337911/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.873718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.354925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.994724 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934271 SAMN22856899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337912/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.69003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.927868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.31465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934272 SAMN22856898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337913/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.52909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.903919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.957093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934273 SAMN22855913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337914/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.560858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.382284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.204985 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934274 SAMN22855584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339978/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.241432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.8861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.320457 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934275 SAMN22857106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339980/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.897859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.000551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.967598 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934276 SAMN22853684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210340000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.938257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.775627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.256226 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934277 SAMN22855188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.568776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.896928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.398294 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934278 SAMN22855964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210340003/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.76879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.06184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.824352 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934279 SAMN22856061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210340004/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.41758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.785418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.560345 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934280 SAMN22854000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340005/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.248198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.732475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.314684 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934281 SAMN22856545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.649632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.350841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.674986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934282 SAMN22853753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.341484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.917963 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.135317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934283 SAMN22853754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.617922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.203775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.755681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934284 SAMN22853752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340010/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.00763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.434565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.162148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934285 SAMN22853751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.7925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.480127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.598558 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934286 SAMN22853750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340012/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.687025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.876757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.751583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934287 SAMN22854988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210340013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.865003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.779495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.21608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934288 SAMN22856833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340054/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.506752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.707819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.142083 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934289 SAMN22856832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210340055/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.104812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.785404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.781386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934290 SAMN22855827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340014/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.859846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.614964 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.708595 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934291 SAMN22853749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340028/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.373707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.852478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.035366 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934292 SAMN22853683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210340016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.473366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.498398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.650724 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934293 SAMN22853748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340029/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.562371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.371355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.57459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934294 SAMN22853747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340030/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.3111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.028269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.376945 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934295 SAMN22855826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340033/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.067877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.40004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.975245 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934296 SAMN22855454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340034/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.257013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.288383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.694319 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934297 SAMN22855453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340035/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.694372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.243895 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.71658 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934298 SAMN22855452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340036/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.215608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.480065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.513883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934299 SAMN22855451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210340039/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.846388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.551197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.103413 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934300 SAMN22853999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340040/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.153708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.767353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.651918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934301 SAMN22855825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340043/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.798908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.78087 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.934618 lineage/clade name AY.40 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934302 SAMN22855824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210340044/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.200266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.281376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.865723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934303 SAMN22854644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210340045/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.365124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.295858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.963007 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934304 SAMN22856208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340046/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9883175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.147231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.90234 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934305 SAMN22854643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210340047/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.939736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.304007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.874276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934306 SAMN22854980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210308596/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.638588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.967392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.915045 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934307 SAMN22854882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308595/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.7688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.708893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.226045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934308 SAMN22856698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210308594/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.458639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.51302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.902814 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934309 SAMN22855959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308591/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.188881 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.439592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.193441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934310 SAMN22854883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308593/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.679816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.105636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.676441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934311 SAMN22855787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210308590/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.722287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.130609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.756542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934312 SAMN22856518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.693567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.449755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.287031 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934313 SAMN22856519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.45642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.036116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.415826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934314 SAMN22855788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210308586/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.549866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.991688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.683617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934315 SAMN22855960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308585/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.50861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.213489 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.316272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934316 SAMN22854235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308583/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.97032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.413391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.982566 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934317 SAMN22855961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308580/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.272202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.002747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.436682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934318 SAMN22855552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210308582/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.608012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.255849 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.398592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934319 SAMN22854475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210308579/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.666542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.368654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.822973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934320 SAMN22854537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210308578/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.628517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.511059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.979695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934321 SAMN22854476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210308577/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.657175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.998999 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.719614 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934322 SAMN22854477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210308576/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.289518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.731096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.626356 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934323 SAMN22854478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210308575/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.58651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.745312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.573711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934324 SAMN22857082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210307342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.953014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.628153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.990751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934325 SAMN22856719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210307341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.799381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.731943 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.520466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934326 SAMN22854519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210308604/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.160148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.565703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.181193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934327 SAMN22854233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308607/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.952574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.886631 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.651191 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934328 SAMN22856517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308605/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.56445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.97791 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.517033 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934329 SAMN22855958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308610/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.423626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.75225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.65935 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934330 SAMN22856516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308611/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.96567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.823317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.319342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934331 SAMN22853884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210308612/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.135529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.175385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.727236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934332 SAMN22855137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210308613/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.066547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.682514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.506472 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934333 SAMN22853883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210308614/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.332588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.745721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.516303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934334 SAMN22854881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308615/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.64125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.398762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.162909 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934335 SAMN22855551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210308617/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.465246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.11266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.930668 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934336 SAMN22854232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308619/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.942939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.902045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.306265 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934337 SAMN22854231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308620/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.4685955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.262789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.985028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934338 SAMN22855803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315501/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.250126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.701438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.2165365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934339 SAMN22854092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315502/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.890306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.521145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.122555 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934340 SAMN22854091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315503/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.88826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.225431 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.818867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934341 SAMN22856308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315505/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.694885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.316853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.976273 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934342 SAMN22854588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315506/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.85466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.528908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.73202 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934343 SAMN22855718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315508/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.376065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.435253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.432281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934344 SAMN22856309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315483/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.497587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.461779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.501057 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934345 SAMN22855723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315484/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.639891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.165244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.685623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934346 SAMN22856979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315514/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.959917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.801825 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.77328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934347 SAMN22856978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315515/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.029121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.528427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.037876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934348 SAMN22854584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315516/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.57502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.369795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.22278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934349 SAMN22854090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315517/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.495842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.787175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.8573446 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934350 SAMN22853847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210315518/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.247734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.160694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.39745 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934351 SAMN22855116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210315519/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.691579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.738703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.118567 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934352 SAMN22855115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210315520/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.439652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.99518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.31201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934353 SAMN22856977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315521/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.985213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.6561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.765436 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934354 SAMN22856976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315522/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.146914 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.998608 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.26611 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934355 SAMN22854089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315524/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.021309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.902752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.773085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934356 SAMN22857261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210315525/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.485462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.592403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.229027 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934357 SAMN22857260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210315526/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.560757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.481707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.46831 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934358 SAMN22854088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315527/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.516033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.908157 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.510885 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934359 SAMN22856975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315528/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.61422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.248587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.161924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934360 SAMN22855417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210315530/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.056816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.827766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.996832 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934361 SAMN22854087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315531/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.015919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.361246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.699163 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934362 SAMN22854919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210315536/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.231138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.3130245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.621166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934363 SAMN22855253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210315537/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.733421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.908377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.733017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934364 SAMN22856121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315538/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.623024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.039225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.471933 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934365 SAMN22854086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315539/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.792637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.751554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.88722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934366 SAMN22854587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315509/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.301043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.849182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.766672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934367 SAMN22854586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315510/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.847526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.498535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.987383 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934368 SAMN22855049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210315542/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.52792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.581587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.001453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934369 SAMN22854585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210315513/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.080129 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.954244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.896239 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934370 SAMN22855912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337915/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.482891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.31109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.998915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934371 SAMN22854903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337916/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.963626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.928517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.123536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934372 SAMN22854902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210337917/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.633276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.262127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.784641 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934373 SAMN22854744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337801/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.687079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.778755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.613292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934374 SAMN22856755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337897/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.430988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.704177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.010714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934375 SAMN22854743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337898/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.928417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.394684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.68944 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934376 SAMN22854630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210337918/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.481466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.299273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.646748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934377 SAMN22854742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337919/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.13576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.553637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.19516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934378 SAMN22854569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337920/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.775644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.275405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.624512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934379 SAMN22856579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337929/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.88346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.17952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.546864 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934380 SAMN22856578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337931/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.18904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.166327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.762909 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934381 SAMN22856465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210337928/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.462296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.644657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.64196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934382 SAMN22856577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.213074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.032701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.310877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934383 SAMN22856079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.852749 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.65104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.811348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934384 SAMN22856754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337934/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.5568075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.351366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.830103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934385 SAMN22856753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337935/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.425863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.98439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.31213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934386 SAMN22856752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337936/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.89953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.889501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.908589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934387 SAMN22856751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337937/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.0679 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.605119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.591324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934388 SAMN22856750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210337938/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.647087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.494123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.181082 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934389 SAMN22857146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337940/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.49885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.304439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.484647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934390 SAMN22855989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210337942/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.783234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.979499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.464338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934391 SAMN22857145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337941/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.568214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.909971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.726024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934392 SAMN22854568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337921/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.084559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.396258 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.327633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934393 SAMN22854567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337922/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.589719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.612392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.186855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934394 SAMN22854566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337923/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.581793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.749693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.44616 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934395 SAMN22854565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337924/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.889814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.969152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.941123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934396 SAMN22854564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210337926/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.164087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.577745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.299917 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934397 SAMN22854047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337927/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.744886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.568298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.551662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934398 SAMN22856396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337949/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.603558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.659225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.496475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934399 SAMN22856395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337950/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.877685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.2002125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.641426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934400 SAMN22856394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337951/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.516709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.501486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.914631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934401 SAMN22854540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210337953/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.30852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.910579 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.780952 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934402 SAMN22855388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340048/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.048944 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.289196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.151896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934403 SAMN22855387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340049/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.610611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.379671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.960901 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934404 SAMN22854626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210340041/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.577703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.509506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.001541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934405 SAMN22855389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340042/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.442568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.764978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.6255 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934406 SAMN22854642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210340050/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.177925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.84978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.592508 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934407 SAMN22855386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340051/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.35539 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.444265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.35109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934408 SAMN22855385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210340052/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.867006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.1849375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.408999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934409 SAMN22855903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210340056/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.953587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.18687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.608122 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934410 SAMN22854552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210340057/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.870764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.072023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.78276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934411 SAMN22855325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210340058/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.650188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.198196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.873278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934412 SAMN22856707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210340060/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.126043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.475168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.330793 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934413 SAMN22853998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340059/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.619081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.46484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.97545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934414 SAMN22853746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340061/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.77155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.361422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.808592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934415 SAMN22853745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210340064/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.309769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.296446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.837273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934416 SAMN22853997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340063/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.387359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.746242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.34572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934417 SAMN22856207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210340065/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.311667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.891397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.632913 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934418 SAMN22855187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340066/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.399426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.663462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.401106 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934419 SAMN22854960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210340068/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.89415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.820686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.720942 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934420 SAMN22855186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340067/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.743322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.60002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.302555 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934421 SAMN22855184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340070/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.896515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.990494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.812344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934422 SAMN22855185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340069/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.414513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.668077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.91607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934423 SAMN22855183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210340071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.937782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.774668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.46674 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934424 SAMN22854987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210340213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.922499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.793075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.837219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934425 SAMN22854551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210340212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8368845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.429529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.188715 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934426 SAMN22855583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210340214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.969507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.424517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.10208 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934427 SAMN22856544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340242/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.30223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.210793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.790869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934428 SAMN22854269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210340243/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6090355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.168875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.566862 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934429 SAMN22853996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210340244/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.652526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.449176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.734042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934430 SAMN22856543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340245/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.960688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.6086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.041601 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934431 SAMN22854625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210340247/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.981696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.217696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.033862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934432 SAMN22856541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210340262/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.908743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.02173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.34595 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934433 SAMN22854886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210340264/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.276779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.388695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.952522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934434 SAMN22855550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210308622/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.28599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.691362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.362764 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934435 SAMN22855096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210308623/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.976301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.441817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.013659 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934436 SAMN22855549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210308624/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.953854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.395817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.449041 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934437 SAMN22853722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210308625/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.502049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.461197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.624848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934438 SAMN22854230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308627/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.163281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.933778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.66359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934439 SAMN22854229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308628/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.93519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.27584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.55337 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934440 SAMN22855361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210308601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.447451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.725603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.874499 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934441 SAMN22854234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210308603/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.282898 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.446785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.554674 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934442 SAMN22854623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210308635/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.728767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.840092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.73921 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934443 SAMN22855956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308636/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.17586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.340461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.737369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934444 SAMN22853882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210308637/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.945385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.97036 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.68139 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934445 SAMN22855085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210308638/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.36056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.335869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.895512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934446 SAMN22854474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210308640/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.695397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.9231615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.533526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934447 SAMN22856166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210308644/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.622413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.865876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.171727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934448 SAMN22856515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210308643/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.10333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.18953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.575008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934449 SAMN22854880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308646/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.909532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.895298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.684098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934450 SAMN22855870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210308645/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.664294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.871427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.894525 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934451 SAMN22856165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210308650/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7387276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.109144 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.249476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934452 SAMN22854879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308647/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.018818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.572691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.259863 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934453 SAMN22854622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210308651/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.200811 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.987741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.988623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934454 SAMN22854878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308654/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.257858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.534729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.221012 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934455 SAMN22853881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210308653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.313637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.574867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.506056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934456 SAMN22855360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210308656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.865102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.683055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.316187 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934457 SAMN22855812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210308655/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.579563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.91532 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.147633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934458 SAMN22854877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.674797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.820875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.870033 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934459 SAMN22855136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210308630/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.414904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.96259 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.755993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934460 SAMN22855548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210308631/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.9625907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.871082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.984827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934461 SAMN22855547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210308632/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.786839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.321147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.312726 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934462 SAMN22855095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210308633/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.851451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.507588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.32694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934463 SAMN22855957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210308634/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.440187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.755896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.729988 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934464 SAMN22854876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210308662/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.119322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.76613 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.638512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934465 SAMN22853721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210308663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.830774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.170502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.127693 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934466 SAMN22855048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210315543/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.770815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.729984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.212643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934467 SAMN22855047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210315544/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.962501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.77494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.577956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934468 SAMN22855114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210315545/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.907417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.848011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.579062 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934469 SAMN22854505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210315546/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.79039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.557041 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.974527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934470 SAMN22853945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210315549/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.701191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.204853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.251995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934471 SAMN22853944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210315551/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.57059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.099602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.927956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934472 SAMN22855717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315547/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.92298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.698967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.289186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934473 SAMN22856711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210315553/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.32065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.341766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.982362 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934474 SAMN22856766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210315554/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.613671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.570501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.209327 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934475 SAMN22856765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210315555/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.913626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5029 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.277961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934476 SAMN22856764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210315556/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.315558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.411519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5116625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934477 SAMN22855802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315558/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.213019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.866306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.227159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934478 SAMN22856120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315557/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.922917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.999056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934479 SAMN22855801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315559/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.608358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.344458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.782438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934480 SAMN22854504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210315560/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source NP Swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.618259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.601578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.030628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934481 SAMN22854085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315561/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.92089 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.141468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.644827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934482 SAMN22854083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315563/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.808852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.856186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.227048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934483 SAMN22854084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315562/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.600117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.691666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.582705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934484 SAMN22854082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315564/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.4785185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.557165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.628853 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934485 SAMN22857189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315540/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.496124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.216316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.130482 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934486 SAMN22855050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210315541/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.207708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.696875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.047497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934487 SAMN22857259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210315568/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.601328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.913216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.713099 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934488 SAMN22856492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210315569/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.806564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.74877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.871548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934489 SAMN22856307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315570/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.87427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.154287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.819668 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934490 SAMN22854590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210314954/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.287008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.636621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.276033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934491 SAMN22854384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314955/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.856302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.378216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.873919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934492 SAMN22854511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210314956/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.568899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.497774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.117741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934493 SAMN22854510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210314957/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.770492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.262348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.878448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934494 SAMN22854833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314958/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.39505 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.555458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.825113 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934495 SAMN22854832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314959/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.189625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.484295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.563248 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934496 SAMN22854831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314960/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.405672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.9630165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.528733 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934497 SAMN22854509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210314961/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.15694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.987307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.8492 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934498 SAMN22854830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314962/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.442219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.11059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.576002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934499 SAMN22854829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314963/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.86819 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.516594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.997562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934500 SAMN22855270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314964/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.366457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.751263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.544472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934501 SAMN22854508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210314965/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.963884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.226675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.92661 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934502 SAMN22854828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314966/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.915064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.749096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.453848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934503 SAMN22854827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210314967/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.741894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.56113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.52646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934504 SAMN22855269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314968/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.460919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.636422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.842785 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934505 SAMN22854388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314932/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.220463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.22666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.134445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934506 SAMN22854343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316587/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.323933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.496838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.386213 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934507 SAMN22854342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316588/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.282707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.332928 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.05961 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934508 SAMN22855660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210325416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.92378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.561342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.216213 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934509 SAMN22855659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210325417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.356468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.339165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.544914 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934510 SAMN22854499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316600/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.661385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.737654 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.714863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934511 SAMN22854498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316601/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.377523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.456555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.617689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934512 SAMN22855658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210325419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.87694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.269865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.29436 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934513 SAMN22855661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210325415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.496507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.3992605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.821958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934514 SAMN22854651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210336131/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.843668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.266853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.927027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934515 SAMN22855798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210336132/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.153852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.539045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.923521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934516 SAMN22855657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336135/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.177768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.4740505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.732507 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934517 SAMN22855656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336136/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.60182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.65859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.404886 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934518 SAMN22855655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336137/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.660206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.889254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.41494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934519 SAMN22856089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210336138/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.5791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.770649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.674706 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934520 SAMN22854527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210336139/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.402626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.880333 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.752966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934521 SAMN22853943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210336143/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.14104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.4636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.425442 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934522 SAMN22854337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210336144/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.83427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.80868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.934402 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934523 SAMN22855797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210336133/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.458097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.053406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.957363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934524 SAMN22855796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210336134/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.462159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.482919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.736321 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934525 SAMN22853809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210336159/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.86971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.3086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.971994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934526 SAMN22853808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210336160/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.461142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.516357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.931099 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934527 SAMN22853807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210336161/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.348938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.272575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.555494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934528 SAMN22856472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210336165/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.953278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.73031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.698608 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934529 SAMN22857165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210336162/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.261032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.965422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.328959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934530 SAMN22854340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210336140/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.894056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.966957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.337065 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934531 SAMN22854339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210336141/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.879688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.56528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.212585 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934532 SAMN22854338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210336142/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.923973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.687319 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.077137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934533 SAMN22854526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210336151/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.881138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.318047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.707714 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934534 SAMN22854525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210336152/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.502867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.65354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.780334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934535 SAMN22856041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210336156/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.027447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.397171 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.287458 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934536 SAMN22856040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210336157/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.371553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.611818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.566252 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934537 SAMN22853810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210336158/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4069395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.719541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.894084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934538 SAMN22854760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337191/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.310755 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.935646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.694952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934539 SAMN22854759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337192/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.872345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.637875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.194012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934540 SAMN22854758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.600103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.045958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.5181 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934541 SAMN22854757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.528099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.882675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.192244 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934542 SAMN22855221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.021779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.738143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.278219 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934543 SAMN22856588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.083292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.359879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.974203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934544 SAMN22854496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210337211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.25902 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.548037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.721153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934545 SAMN22856269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.518827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.239222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.890034 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934546 SAMN22856268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.436631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.58079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.536943 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934547 SAMN22856923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.638758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.969072 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.579872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934548 SAMN22856922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.623037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.299189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.46559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934549 SAMN22854497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210337209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.501346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.665428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.64293 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934550 SAMN22856587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.69232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.242365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934551 SAMN22856586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.306774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.862099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.7128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934552 SAMN22856267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337312/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.585128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.219376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.776674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934553 SAMN22856585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337313/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.211506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.65701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.923402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934554 SAMN22855642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337314/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.8530655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.945894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.622497 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934555 SAMN22854051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337315/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.953169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.837088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.571222 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934556 SAMN22855641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337316/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.036187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.020822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.539271 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934557 SAMN22856266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337317/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.291828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.224577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.991705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934558 SAMN22855219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210337198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.640946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.352899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.601028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934559 SAMN22856272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.776806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.252543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.756838 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934560 SAMN22854052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.599632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.18475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.492867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934561 SAMN22856584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337318/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.70903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.461933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.313738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934562 SAMN22855640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337319/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.633915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.840681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.26008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934563 SAMN22856271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.760635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.475988 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.347597 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934564 SAMN22856270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.14957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.390106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.34771 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934565 SAMN22855639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337320/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.131739 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.538765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.575909 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934566 SAMN22857149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337323/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.923205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.600715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.347548 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934567 SAMN22856921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337324/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.733974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.365997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.71658 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934568 SAMN22856920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337325/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.30177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.553736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.253979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934569 SAMN22855919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337326/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.011025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.806866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.4561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934570 SAMN22855593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339778/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.9070473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.570779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.429063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934571 SAMN22856563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339777/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.876762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.918724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.823925 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934572 SAMN22854953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210339782/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.828622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.584105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.413563 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934573 SAMN22853763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339783/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.60369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.682985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.51555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934574 SAMN22853762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339784/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.213829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.914133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.000924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934575 SAMN22853761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210339785/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.304012 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.6929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.780665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934576 SAMN22856219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339786/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.14201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.787283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.56462 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934577 SAMN22855589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339788/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.781384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.119128 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.638438 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934578 SAMN22856218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339787/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.844168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.770243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.855679 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934579 SAMN22856217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339790/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.185125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.756983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.673464 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934580 SAMN22856848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339791/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.992277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.52925 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.388891 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934581 SAMN22856847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339793/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.609472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.605362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.353333 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934582 SAMN22856733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210339794/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.860658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.263054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.614889 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934583 SAMN22857127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339795/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.096281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.145972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.960104 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934584 SAMN22857126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339796/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.235943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.335268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.813515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934585 SAMN22855455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210339797/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.426626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.38254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.490253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934586 SAMN22856846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339799/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.626124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.657841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.11533 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934587 SAMN22856845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210339800/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.111628 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.768545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.869617 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934588 SAMN22856562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339802/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.704638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.607959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.201621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934589 SAMN22855828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210339803/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.70482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.690424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.453058 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934590 SAMN22856561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210339804/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.680497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.346204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.77238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934591 SAMN22857125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339806/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.798347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.202124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.377916 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934592 SAMN22855592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339779/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.353512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.197428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.884165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934593 SAMN22855591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339780/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.415508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.788064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.360614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934594 SAMN22855590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210339781/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.891098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.990124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.149935 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934595 SAMN22856216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210339809/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.660769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.393217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.459597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934596 SAMN22854711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339810/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.622043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.783733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.904794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934597 SAMN22854710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210339811/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.2895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.337821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.612742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934598 SAMN22856461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210339812/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.401365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.744621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.616467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934599 SAMN22857122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339813/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.165823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.400097 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.427944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934600 SAMN22857121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210339815/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.960335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.39279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.27695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934601 SAMN22855905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210339816/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.7157135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.857065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.346997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934602 SAMN22854942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210312399/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.94723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.363646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.934324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934603 SAMN22857051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312400/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.698523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.599625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.2888 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934604 SAMN22857049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312402/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.28119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.00649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.674833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934605 SAMN22857050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312401/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.865671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.5654125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8948965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934606 SAMN22853926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210312403/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.458748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.166179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.105876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934607 SAMN22853925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210312404/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.688015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.124884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.443172 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934608 SAMN22853924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210312405/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.629911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.869811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.135658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934609 SAMN22854172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312406/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.545418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.83728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.710892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934610 SAMN22857048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.612717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.264643 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.610376 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934611 SAMN22857047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210312408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.921638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.767918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.495804 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934612 SAMN22853866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210312409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.443785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.18397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.931442 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934613 SAMN22854941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210312410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.714779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.19502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.775627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934614 SAMN22856351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.882637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.517735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.927656 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934615 SAMN22855126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210312412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.944369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.551766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.294769 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934616 SAMN22854606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210312391/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.641176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.946118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.000526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934617 SAMN22854605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210312392/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.7988105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.226091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.347611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934618 SAMN22853922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210312416/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.38179 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.956231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.8043375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934619 SAMN22856437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210312417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.568863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.108894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.440464 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934620 SAMN22854171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.497121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.06346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.503783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934621 SAMN22854170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.797747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.180412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.934793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934622 SAMN22854169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.375671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.599096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.389637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934623 SAMN22854168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312422/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.989424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.48178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.232298 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934624 SAMN22854166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.912216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.975151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.979881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934625 SAMN22854167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312423/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.329685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.858938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.0949 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934626 SAMN22854164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.564709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.474297 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934627 SAMN22854165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.790018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.9768 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934628 SAMN22854163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.400779 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.488389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.533706 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934629 SAMN22855940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210312430/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.561766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.4481535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.146901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934630 SAMN22853865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210312428/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.428925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.497582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.817594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934631 SAMN22855090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210312429/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.647153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.959261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.879005 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934632 SAMN22855089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210312431/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.241732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.22117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.812347 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934633 SAMN22855939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210312432/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.563929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.5495405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.675051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934634 SAMN22854387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210314933/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.648368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.659126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.507703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934635 SAMN22855265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314972/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.637484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.136944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.396278 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934636 SAMN22855264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314973/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.448957 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.348858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4582205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934637 SAMN22855263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314974/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.722246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.961372 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.65823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934638 SAMN22856128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314999/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.014234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.958748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.202919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934639 SAMN22856991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314976/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.716803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.700516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.958408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934640 SAMN22856769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210314977/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.787838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.873687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.708109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934641 SAMN22856990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314982/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.530262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.91959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.028658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934642 SAMN22856989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314983/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.677176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.880669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.663303 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934643 SAMN22857205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314984/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.489325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.14467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.800803 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934644 SAMN22857204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314985/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.126676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.16674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.916749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934645 SAMN22853946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210314986/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.558098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.694767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.500494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934646 SAMN22855262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314987/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.811304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.680708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.77906 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934647 SAMN22855261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314988/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.746237 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.429323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.834768 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934648 SAMN22855260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314989/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.781591 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.429298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.595837 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934649 SAMN22856988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314990/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.81823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.182459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.949641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934650 SAMN22855120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210314991/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.531712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.27862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.216594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934651 SAMN22855119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210314992/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.96129 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.302902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.83239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934652 SAMN22856987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210314993/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.450857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.071302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.137333 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934653 SAMN22857203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314994/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.418928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.415625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.752285 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934654 SAMN22855268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314969/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.820774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.579193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.960482 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934655 SAMN22855267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314970/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.923604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.437764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.920337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934656 SAMN22855266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210314971/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.245981 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.502504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.249071 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934657 SAMN22855731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210314997/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.42643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.170735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.224597 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934658 SAMN22856127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315000/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.190348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.951443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.768005 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934659 SAMN22856129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210314998/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.85439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.020506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.847164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934660 SAMN22856126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210315001/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.240231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.193164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.729655 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934661 SAMN22856986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315002/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.641659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.474236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.98577 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934662 SAMN22855121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210314979/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.900496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.626652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.38076 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934663 SAMN22857206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314981/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.187143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.76369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.852861 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934664 SAMN22856985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315004/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.091372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.70953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.228481 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934665 SAMN22854101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315006/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.243936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.374293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.8121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934666 SAMN22854073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336146/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.692911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.002289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.997234 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934667 SAMN22855486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336148/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.50121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.115732 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.354275 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934668 SAMN22855487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336147/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.090244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.765215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.591215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934669 SAMN22854524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210336153/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.218252 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.282343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.511843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934670 SAMN22856042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210336155/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.869324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.618814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.740208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934671 SAMN22856043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210336154/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.20345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.787231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.943789 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934672 SAMN22855485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336149/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.317497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.446035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.729834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934673 SAMN22855484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336150/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.181528 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.986736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.18181 lineage/clade name B.1.36.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934674 SAMN22854777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336171/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.795546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.846207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.605165 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934675 SAMN22854776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336172/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.605806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.194658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.950261 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934676 SAMN22853902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210336174/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.397865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.42896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.532236 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934677 SAMN22855654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336173/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.499147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.302166 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.918945 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934678 SAMN22856400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210336175/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.632923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.835306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.686268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934679 SAMN22854072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336176/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.752062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.905193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.763231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934680 SAMN22854523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210336177/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.828926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.245481 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.184319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934681 SAMN22855923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210336178/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.367207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.669912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.240852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934682 SAMN22853903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210336167/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.467184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.253363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.370848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934683 SAMN22856598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210336166/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.197588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.86798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.580826 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934684 SAMN22854911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210336181/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.11665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.234753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.687046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934685 SAMN22856279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210336179/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.064732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.648687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.790628 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934686 SAMN22854336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210336182/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.841719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.40812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.67654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934687 SAMN22854071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336183/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.949488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.482056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.548443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934688 SAMN22854070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336184/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.818699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.717821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.277943 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934689 SAMN22854778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336170/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.118984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.832598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.64038 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934690 SAMN22854069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336185/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.956866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.816538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.428822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934691 SAMN22854779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336169/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.15873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.582176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.569248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934692 SAMN22854068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336187/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.935313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.319616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.920505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934693 SAMN22855483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336188/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.443714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.574219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.981318 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934694 SAMN22855482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336189/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.480892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.623456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.387304 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934695 SAMN22856596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210336195/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.363731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.368496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.506632 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934696 SAMN22856278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210336190/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source NP Swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.77923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.763176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.627613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934697 SAMN22854774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336196/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.916185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.918833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.994093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934698 SAMN22855108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210337328/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.854368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.272205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.845478 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934699 SAMN22856583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210337329/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.861536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.453402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.644539 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934700 SAMN22855918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337330/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.395153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.176863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.43735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934701 SAMN22855637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337333/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.535724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.649911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.710141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934702 SAMN22855406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210337335/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.23986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.999998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.837225 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934703 SAMN22854050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210337334/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.527316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.344474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.657936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934704 SAMN22855636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337336/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.505659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.748006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.308048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934705 SAMN22855917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337339/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.772086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.974445 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.588203 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934706 SAMN22853802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337340/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.530368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.324484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.501964 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934707 SAMN22853801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337341/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.897761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.347533 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.462821 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934708 SAMN22853800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337343/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.179674 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.853304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.309721 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934709 SAMN22856919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337344/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.606708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.639392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.772125 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934710 SAMN22855916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337342/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.957815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.626499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.340531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934711 SAMN22855012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210337347/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.4202175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.259132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.35919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934712 SAMN22856265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337348/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.152466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.953575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.696056 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934713 SAMN22855477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210337349/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.774009 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.546949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.964218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934714 SAMN22855638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337321/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.91989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.120192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.844679 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934715 SAMN22856918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337353/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.960493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.525427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.28539 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934716 SAMN22856917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337354/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.891584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.591242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.622509 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934717 SAMN22857150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210337322/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.493462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.6878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.49454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934718 SAMN22853799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210337355/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.259713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.247368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.567142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934719 SAMN22856916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337356/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.817258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.172653 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.626374 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934720 SAMN22856915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210337357/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.950057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.868323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.533764 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934721 SAMN22854756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337358/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.385374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.034039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.00447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934722 SAMN22854755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337359/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.130564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.283441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.562579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934723 SAMN22856264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337360/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.676131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.819182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.016596 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934724 SAMN22854754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210337361/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.517933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.397404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.651287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934725 SAMN22856085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210337363/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.911555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.744678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.577495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934726 SAMN22856263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337362/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.420853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.902253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.626915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934727 SAMN22856262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337364/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.557367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.39862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6669655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934728 SAMN22856261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337365/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.855564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.332718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.910313 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934729 SAMN22856260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210337366/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.208807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.570389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.83999 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934730 SAMN22856678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210312433/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.07641 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.961843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.63402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934731 SAMN22856677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210312434/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.275808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.554188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.517052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934732 SAMN22854162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312435/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.558842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.363136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.138887 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934733 SAMN22853708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210312436/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.649883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.65396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.631767 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934734 SAMN22855433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210312413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.850702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.5956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.138542 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934735 SAMN22853923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210312415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.341606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.803001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.352175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934736 SAMN22854940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210312414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.363527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.355112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.353865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934737 SAMN22854161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312440/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.12982 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.973976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.740166 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934738 SAMN22854160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312441/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.696182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.88127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.6529 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934739 SAMN22854159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312442/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.991056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 37.6711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.98077 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934740 SAMN22854158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312443/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.690956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.435217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.72956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934741 SAMN22855938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210312448/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.982934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.181582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.843356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934742 SAMN22856156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210312449/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.932514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.472338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.221589 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934743 SAMN22856155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210312450/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.533754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.65771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.761366 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934744 SAMN22855304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210312454/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.334723 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.705368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.38116 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934745 SAMN22855305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210312453/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.985676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.106506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.400805 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934746 SAMN22855303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210312455/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.634256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.801897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.659538 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934747 SAMN22855302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210312457/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.164738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.954557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.584066 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934748 SAMN22853864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210312458/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.923114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.531514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.350277 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934749 SAMN22856676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210312459/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.029493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.357426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.860462 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934750 SAMN22856349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312460/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.791635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.229159 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.107673 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934751 SAMN22855358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210312462/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.932972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.641776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.030934 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934752 SAMN22854532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210312653/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.598047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.303661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.174037 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934753 SAMN22854157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210312654/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.233833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.718353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.925339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934754 SAMN22854531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210312655/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.838211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.40236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.226908 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934755 SAMN22854530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210312656/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.5753913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.886939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.6551676 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934756 SAMN22854529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210312657/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.466852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.574818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.2862964 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934757 SAMN22855772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210312438/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.636274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.610682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.56578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934758 SAMN22856350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312439/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.835659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.447558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.948972 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934759 SAMN22856022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210312663/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.652765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.891655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.694004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934760 SAMN22856348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312661/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.683548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.005045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.707806 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934761 SAMN22856347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210312664/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.414835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.334755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.527966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934762 SAMN22854100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315007/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.628561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.473639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.540924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934763 SAMN22855730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315008/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.2303095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.815204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.266955 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934764 SAMN22855928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210315009/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.564586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.406186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.716292 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934765 SAMN22854099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315011/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.667297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.354023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.904188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934766 SAMN22855729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315013/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.955802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.364757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.601718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934767 SAMN22854098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315012/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.496691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.492386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.544867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934768 SAMN22857200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315015/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.860605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.7641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.188208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934769 SAMN22857201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315014/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.614492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.489649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.546558 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934770 SAMN22857199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315016/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.627364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.282604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.0174 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934771 SAMN22857198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315017/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.403454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.588583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.29857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934772 SAMN22857197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315018/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.964651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.944447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.954052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934773 SAMN22857202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210314995/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.0096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.702456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.046389 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934774 SAMN22857196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210315019/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.683808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.38288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.739819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934775 SAMN22854826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315407/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.140407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.905724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.493178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934776 SAMN22854102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210314996/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.72423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.230719 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.837568 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934777 SAMN22854825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210315408/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.788347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.969103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.230425 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934778 SAMN22856984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315410/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source NP Swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.998119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.506074 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.403239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934779 SAMN22856316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315409/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.120001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.804091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.333012 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934780 SAMN22856767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210315412/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.000695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.56938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.933356 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934781 SAMN22856983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315411/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.939558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.734205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.400827 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934782 SAMN22856982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315413/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.33347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.885628 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.434927 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934783 SAMN22855728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315417/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.55406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.24406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.505306 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934784 SAMN22854097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210315414/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-07 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.946692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.832626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.102007 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934785 SAMN22854634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210315415/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.564335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.458902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.689286 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934786 SAMN22855726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315419/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.846931 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.599604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.906912 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934787 SAMN22855727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315418/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.306622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.643763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.809323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934788 SAMN22855724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315421/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.084433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.9549465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.543558 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934789 SAMN22856712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210315424/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.594847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.743982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.643648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934790 SAMN22855725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210315420/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.769781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.954346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.218983 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934791 SAMN22856315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210315425/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.328257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.53852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.206322 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934792 SAMN22856981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210315426/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.5646305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.556125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.576472 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934793 SAMN22855808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210315427/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-08 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.62886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.811222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.970582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934794 SAMN22854479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210336197/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.374683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.419933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.961113 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934795 SAMN22856761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210336198/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.843004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.78769 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.957886 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934796 SAMN22856760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210336199/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.298334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.791996 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.215273 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934798 SAMN22856758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210336201/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.773329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.992294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.66686 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934799 SAMN22854773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336204/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.363316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.468466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.374765 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934800 SAMN22855653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336202/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.465958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.437046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.867414 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934801 SAMN22855652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336203/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.861639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.310686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.327948 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934802 SAMN22854067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336205/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.040316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.820156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.131762 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934803 SAMN22856425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210336206/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.462552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.513801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.584901 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934804 SAMN22854066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336208/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.344807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.961002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.567076 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934797 SAMN22856759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210336200/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.919823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.918406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.222866 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934805 SAMN22854065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336209/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.776136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.865444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.512909 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934806 SAMN22854968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210336207/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.411583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.78437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.26923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934807 SAMN22854650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210336212/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.419933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.356497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.57465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934808 SAMN22854064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210336211/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.922434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.63931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.76195 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934809 SAMN22853806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210336210/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.572174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.838114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.656437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934810 SAMN22856276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210336214/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.229445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.760223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.587673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934811 SAMN22856277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210336213/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.141802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.070541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.11856 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934812 SAMN22854775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210336191/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.576384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.464382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.253517 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934813 SAMN22853672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210336193/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-05 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.40463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.330254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.757575 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934814 SAMN22855481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336217/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.57091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.704565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.766579 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934815 SAMN22856597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210336194/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.849512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.792591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.830708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934816 SAMN22855480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210336218/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.348373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.108696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.86645 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934817 SAMN22855651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336219/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.711581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.828044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.394341 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934818 SAMN22855650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336220/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.347821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.764954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.750645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934819 SAMN22855649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210336221/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.914373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.179125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.400988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934820 SAMN22854631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210337071/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.713839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.539759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.324743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934821 SAMN22856399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210337073/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.264393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.727015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.465536 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934822 SAMN22855648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337074/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.829018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.301867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.281023 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934823 SAMN22855922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210337075/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.612864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.68696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.69047 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934824 SAMN22855647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337076/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.263217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.807663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.863758 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10934825 SAMN22855646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210337077/2021 collected_by Aegis Sciences Corporation collection_date 2021-10-06 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.56672 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.54892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.121214 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated