<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE187394" accession="SRP344358">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP344358</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA777536</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE187394</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Myeloid-specific SHP-2 ablation alters the fate commitment of myeloid cells and induces anti-tumor immunity</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Transcriptome Analysis"/>
      <STUDY_ABSTRACT>We generated mice with conditional targeting of the Ptpn11 gene (encoding for Shp-2) in T cells (Shp-2fl/flLckCre) or myeloid cells (Shp-2fl/flLysMCre). Although no difference in tumor growth was observed between Shp-2fl/flLckCre and control mice and both groups were similarly benefitted by PD-1 blockade, Shp-2fl/flLysMCre mice had significantly diminished tumor growth that was not further decreased by anti-PD-1 treatment. As revealed by RNA-seq, myeloid-specific Shp-2 ablation was paralleled by expansion of activated myeloid cells and macrophages with molecular signatures of enhanced neutrophil and macrophage differentiation, phagocytosis, antigen-presenting function, TLR and type I IFN signaling, chemokine production, and expression of immunostimulatory molecules, which promoted T cell recruitment and activation. Overall design: Control Shp-2fl/fl and Shp-2fl/flLysMCre mice were inplanted with M17 tumors and 15 days later GR-1+ MDSC were collected from the spleen, and CD11b+F4/80+ TAMs were collected from the tumor site. RNA was extracted and differential gene expression was examined by RNAsequencing. Two replicates of RNA samples isolated from GR1+ MDSC per experimental group were analyzed. Three replicates of RNA samples isolated from TAMs per experimental group were analyzed.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE187394</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>36581713</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
