SRS10937264 SAMN22904258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.816 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.200 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937263 SAMN22904259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.368 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937262 SAMN22903146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343400/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937261 SAMN22907624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.993 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937260 SAMN22906505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937259 SAMN22906504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937247 SAMN22905419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.858 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.508 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937248 SAMN22906512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937249 SAMN22906511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.341 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937250 SAMN22906510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937251 SAMN22906509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937252 SAMN22905418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.623 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937253 SAMN22902900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937254 SAMN22906508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937255 SAMN22906507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.397 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937256 SAMN22906506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.977 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937257 SAMN22905417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.481 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937258 SAMN22906222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC0350955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937246 SAMN22907625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937265 SAMN22905351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.324 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937266 SAMN22904257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.874 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937267 SAMN22904256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343405/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937268 SAMN22904255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343406/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.692 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937269 SAMN22904254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.484 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937270 SAMN22904253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937271 SAMN22905350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937272 SAMN22903145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937273 SAMN22904252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343414/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.330 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937274 SAMN22905349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343413/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937275 SAMN22905348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343418/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.957 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937276 SAMN22904250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.389 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937277 SAMN22904251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.771 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937278 SAMN22905347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937279 SAMN22903144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.121 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937280 SAMN22904249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.224 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937281 SAMN22906438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343422/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.367 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937282 SAMN22905345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343424/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937295 SAMN22905328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343481/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937296 SAMN22904233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.562 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937297 SAMN22905327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343484/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.590 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937310 SAMN22904226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.327 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937311 SAMN22904225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937283 SAMN22905346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937284 SAMN22903143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343425/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.789 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937285 SAMN22904248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937286 SAMN22904247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343429/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.315 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937287 SAMN22904246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.950 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937288 SAMN22904245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343433/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.809 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.741 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937290 SAMN22903142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343434/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937291 SAMN22905344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.740 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937292 SAMN22905329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937293 SAMN22905342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343438/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.655 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937294 SAMN22905343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.049 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937298 SAMN22904232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343485/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.485 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937299 SAMN22905326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343486/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.242 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937300 SAMN22903134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.602 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937301 SAMN22905325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343488/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.830 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937302 SAMN22904231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343489/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.563 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937312 SAMN22904224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.954 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.046 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937313 SAMN22905323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.407 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937314 SAMN22905322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.811 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937315 SAMN22904223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343504/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.574 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937316 SAMN22903131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.544 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937317 SAMN22903130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.304 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937318 SAMN22903129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937319 SAMN22903128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.321 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937320 SAMN22905321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.238 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937321 SAMN22905320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.386 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937322 SAMN22903127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.917 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937323 SAMN22904221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343518/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.537 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937324 SAMN22904222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.545 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937325 SAMN22904220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343521/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937326 SAMN22906722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.398 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937327 SAMN22906721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.806 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937328 SAMN22906209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344791/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937329 SAMN22906934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937330 SAMN22900941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344794/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.77 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.961 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937331 SAMN22900940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.892 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937332 SAMN22900939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.442 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937349 SAMN22906933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.161 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937350 SAMN22900930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937351 SAMN22900929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344819/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.174 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937352 SAMN22900928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.651 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937353 SAMN22906712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.371 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937354 SAMN22900927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344821/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.328 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937355 SAMN22906208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344824/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.333 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937356 SAMN22900926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937357 SAMN22906932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344828/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.300 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937358 SAMN22907306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0344939/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937359 SAMN22907304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0344941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937289 SAMN22904244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.788 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937303 SAMN22904230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.715 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.585 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937304 SAMN22904229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.643 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937305 SAMN22903133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343494/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.244 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937306 SAMN22905324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.099 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937307 SAMN22904228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937308 SAMN22903132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.141 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937309 SAMN22904227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.824 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937333 SAMN22900937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.368 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937334 SAMN22900938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344798/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937335 SAMN22900936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937336 SAMN22900935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.194 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937337 SAMN22900934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344805/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937338 SAMN22900933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344806/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937339 SAMN22900932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344807/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.505 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937340 SAMN22900931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937341 SAMN22906719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937342 SAMN22906720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.860 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937343 SAMN22906718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937344 SAMN22906716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344813/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.925 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937345 SAMN22906717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.270 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937346 SAMN22906714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937347 SAMN22906715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.890 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937348 SAMN22906713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937360 SAMN22907305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0344940/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.979 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937361 SAMN22907303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0344942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.580 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937362 SAMN22901219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.070 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937363 SAMN22907183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.208 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937364 SAMN22901416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937365 SAMN22907182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937366 SAMN22901218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.718 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.413 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937367 SAMN22901217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937368 SAMN22901216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.711 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.572 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937369 SAMN22901215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.007 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937370 SAMN22907180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937371 SAMN22907181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937372 SAMN22907179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.744 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937373 SAMN22906010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0344955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.847 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937374 SAMN22908667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937375 SAMN22908666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937376 SAMN22908665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.117 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937377 SAMN22908664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.422 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937378 SAMN22908663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.263 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937379 SAMN22908662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.530 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937380 SAMN22908661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.192 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937381 SAMN22908722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.420 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937382 SAMN22908721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.065 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937383 SAMN22907178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.838 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937384 SAMN22907177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.628 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937385 SAMN22906009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0344986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.136 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937386 SAMN22906847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0344989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.798 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937387 SAMN22902228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.142 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937388 SAMN22902227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.999 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937389 SAMN22903996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.739 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937390 SAMN22902226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345000/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937391 SAMN22903995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345333/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.355 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937392 SAMN22903994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.355 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937393 SAMN22904687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.182 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937394 SAMN22908630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345338/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937395 SAMN22906007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345341/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.470 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937396 SAMN22905547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0345343/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.876 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937397 SAMN22907173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345342/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.148 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937398 SAMN22908629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345344/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.172 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937399 SAMN22905069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937400 SAMN22904686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.770 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937401 SAMN22904685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.748 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937402 SAMN22905070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.870 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937403 SAMN22902208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.545 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.175 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937404 SAMN22907918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345357/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.589 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937405 SAMN22902207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.590 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937406 SAMN22907391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.270 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937407 SAMN22902206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.180 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937408 SAMN22907390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.580 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937409 SAMN22907389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.239 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937410 SAMN22907388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937411 SAMN22905068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937412 SAMN22905067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.056 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.252 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937413 SAMN22904684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.221 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937414 SAMN22904683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.641 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937415 SAMN22902205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.630 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937416 SAMN22904682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937417 SAMN22904681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345373/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.857 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937418 SAMN22904680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937419 SAMN22906924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0345377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.056 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937420 SAMN22901214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.935 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937421 SAMN22907387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345387/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.108 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937422 SAMN22901346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346089/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.260 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937423 SAMN22906920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.949 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937424 SAMN22907133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.586 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937425 SAMN22907132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.729 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937426 SAMN22907131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346093/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.801 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937427 SAMN22907130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.858 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937428 SAMN22901345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.956 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937429 SAMN22907129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937430 SAMN22901343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.738 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.697 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937431 SAMN22901344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.581 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.645 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937432 SAMN22903311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.814 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937433 SAMN22903310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346100/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937434 SAMN22903309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346101/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.146 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937435 SAMN22901342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937436 SAMN22901341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937437 SAMN22904654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.464 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937438 SAMN22904653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346108/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.990 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937439 SAMN22902189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937440 SAMN22902188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.564 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937441 SAMN22904652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346112/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.439 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937442 SAMN22904651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346114/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937443 SAMN22904650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937444 SAMN22904648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346117/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.140 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937445 SAMN22904649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346116/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937446 SAMN22904647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937447 SAMN22907128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.069 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937448 SAMN22904646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.876 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937449 SAMN22908173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.004 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937450 SAMN22904645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937451 SAMN22904644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346123/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.702 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937452 SAMN22904643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346124/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937453 SAMN22907584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0346125/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.919 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937454 SAMN22908155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346697/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.778 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937455 SAMN22908154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937456 SAMN22908153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346700/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.108 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937457 SAMN22908152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937458 SAMN22908151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.003 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937459 SAMN22908150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937460 SAMN22908149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346706/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.969 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937461 SAMN22908148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937462 SAMN22908147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.456 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937463 SAMN22908146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937464 SAMN22908145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346711/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.457 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937465 SAMN22908144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.020 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937466 SAMN22908143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.821 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937467 SAMN22908142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.420 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937468 SAMN22908141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937469 SAMN22908140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346716/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.423 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937470 SAMN22908138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.199 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.457 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937471 SAMN22908137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346719/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.504 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937472 SAMN22908139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346717/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.599 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937473 SAMN22908135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346721/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.444 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937474 SAMN22908136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937475 SAMN22908134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.076 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937476 SAMN22908133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346723/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.322 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937477 SAMN22908131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346725/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.950 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937478 SAMN22908132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937479 SAMN22908130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346726/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.271 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937480 SAMN22908129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937481 SAMN22908128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346728/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937482 SAMN22908127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.439 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937483 SAMN22908126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346730/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.615 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937484 SAMN22908124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937485 SAMN22908125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937486 SAMN22901939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.448 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937487 SAMN22904959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.694 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.494 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937488 SAMN22908528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.894 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937489 SAMN22908527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346889/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.396 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937490 SAMN22904605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346891/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.930 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937491 SAMN22901172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346892/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.616 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.733 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937492 SAMN22908526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346890/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.155 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937493 SAMN22901171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.349 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937494 SAMN22901938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346896/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.652 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937495 SAMN22908525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346900/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.606 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937496 SAMN22901937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937497 SAMN22905862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0346903/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.355 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937498 SAMN22906107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346906/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.529 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.170 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937499 SAMN22907879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 20.989 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937500 SAMN22901170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346910/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.450 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937501 SAMN22907109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346911/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.062 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.240 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937502 SAMN22907878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.487 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937503 SAMN22905991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346913/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.161 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937504 SAMN22906106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346916/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.94 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.208 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937505 SAMN22906105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.459 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937506 SAMN22905990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346918/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.654 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937507 SAMN22904958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.496 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937508 SAMN22904957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346920/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.6 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937509 SAMN22904956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346921/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.734 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937510 SAMN22901169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.987 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937511 SAMN22904955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.480 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937512 SAMN22907108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346925/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.338 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937513 SAMN22901168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.452 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937514 SAMN22906910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346926/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.045 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937515 SAMN22905989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346928/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937516 SAMN22906104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.304 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937517 SAMN22907107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.610 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937518 SAMN22900810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.335 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937519 SAMN22903017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937520 SAMN22900809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.297 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937521 SAMN22907039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.408 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937522 SAMN22903895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937523 SAMN22903894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.178 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.455 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937524 SAMN22903016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937525 SAMN22903893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.077 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937526 SAMN22906890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349114/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.801 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937527 SAMN22903892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349113/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.806 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937528 SAMN22903015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349117/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.388 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937529 SAMN22903014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937530 SAMN22903891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.626 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937531 SAMN22903890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349129/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.799 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937532 SAMN22903889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.320 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937533 SAMN22903013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349132/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937534 SAMN22903888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.480 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937535 SAMN22906889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.278 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937536 SAMN22906888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937537 SAMN22906887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937538 SAMN22906886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.805 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937539 SAMN22906885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.075 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937540 SAMN22907038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.062 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937541 SAMN22906884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349141/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.152 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.828 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937542 SAMN22906883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349142/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.709 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937543 SAMN22906882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.714 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937544 SAMN22906881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.028 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937545 SAMN22906880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349145/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.645 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937546 SAMN22906879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937547 SAMN22906878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349147/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.409 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937548 SAMN22906877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349150/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.612 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937549 SAMN22906876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.684 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937550 SAMN22906062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.245 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937551 SAMN22904830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.158 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937552 SAMN22904828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349442/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937553 SAMN22904827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349443/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937554 SAMN22904829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937555 SAMN22901851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.043 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.460 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937556 SAMN22905489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0349445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937557 SAMN22907024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937558 SAMN22907022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.897 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937559 SAMN22904826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.405 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937560 SAMN22907023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349448/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.646 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937561 SAMN22904825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.940 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937562 SAMN22904824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.516 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937563 SAMN22904823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.441 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937564 SAMN22901091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.619 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937565 SAMN22901850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.049 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937566 SAMN22901849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937567 SAMN22901848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.068 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937568 SAMN22908313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.994 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937569 SAMN22906163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.339 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937570 SAMN22906162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.49 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937571 SAMN22906161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349473/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.437 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937572 SAMN22900808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.456 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937573 SAMN22900807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937574 SAMN22900806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.552 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.617 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937575 SAMN22900805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937576 SAMN22906661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349480/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.389 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937577 SAMN22903887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.707 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937578 SAMN22906160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349484/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937579 SAMN22906159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349485/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937580 SAMN22906158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349486/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.028 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937581 SAMN22900804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937582 SAMN22905562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.346 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937583 SAMN22905564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351382/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937584 SAMN22905563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351389/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.081 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937585 SAMN22905561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.316 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937586 SAMN22905560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.610 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937587 SAMN22905559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351397/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937588 SAMN22901439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351400/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.205 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937589 SAMN22905558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.035 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937590 SAMN22906226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.045 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937591 SAMN22901437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937592 SAMN22905557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351413/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.774 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937593 SAMN22901438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.604 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937594 SAMN22905556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937595 SAMN22901436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351417/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.210 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937596 SAMN22905555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937597 SAMN22902945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0351426/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.622 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937598 SAMN22905554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937599 SAMN22901435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.048 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937600 SAMN22905553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351428/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937601 SAMN22905551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937602 SAMN22905552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351429/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.599 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937603 SAMN22901434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.429 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937604 SAMN22902838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.612 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937605 SAMN22901083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.258 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937606 SAMN22902081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937607 SAMN22906763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0351445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.893 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937608 SAMN22902080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351448/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937609 SAMN22901233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0351451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.638 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937610 SAMN22908312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.693 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937611 SAMN22902079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.651 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937612 SAMN22902078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.981 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937613 SAMN22905341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343440/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.329 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937615 SAMN22903141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937616 SAMN22903140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343442/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.724 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937617 SAMN22905339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.328 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937618 SAMN22905340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343443/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937619 SAMN22905338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.903 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937620 SAMN22905337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.681 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937621 SAMN22903139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343449/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.468 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937622 SAMN22903138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.653 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.410 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937623 SAMN22903137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.699 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.704 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937624 SAMN22904243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937614 SAMN22902077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.085 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937625 SAMN22904242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.731 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937626 SAMN22904241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937627 SAMN22904239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.705 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937628 SAMN22904240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937629 SAMN22905335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.150 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937630 SAMN22906437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.278 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937631 SAMN22905336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.136 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937632 SAMN22905334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.540 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937633 SAMN22904238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.490 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937634 SAMN22905333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.55 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.642 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937635 SAMN22904237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937636 SAMN22904236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937637 SAMN22907199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0343470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.130 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937638 SAMN22903136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.630 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937639 SAMN22903135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343472/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.049 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937640 SAMN22904235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.530 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937641 SAMN22906938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0343471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937642 SAMN22904234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.258 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937643 SAMN22905332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.473 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937644 SAMN22905331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.649 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.554 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937645 SAMN22905330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.701 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.793 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937646 SAMN22901371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.952 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937647 SAMN22903324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.102 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937648 SAMN22903323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.773 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937649 SAMN22901370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345998/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.576 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937650 SAMN22903322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937651 SAMN22901369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.436 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937652 SAMN22901368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.168 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937653 SAMN22901367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937654 SAMN22901366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937655 SAMN22903320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937656 SAMN22903321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.344 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937657 SAMN22901364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.936 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937658 SAMN22907258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346015/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937659 SAMN22901365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346013/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.208 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937660 SAMN22903319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.995 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937661 SAMN22901363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937662 SAMN22907714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0346020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937663 SAMN22901362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937664 SAMN22907257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937665 SAMN22901361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346024/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.636 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937666 SAMN22901186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937667 SAMN22903318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.097 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937668 SAMN22906922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346032/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937669 SAMN22906921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937670 SAMN22901185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.083 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937671 SAMN22907254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346041/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.763 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937672 SAMN22907256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.42 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.538 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937673 SAMN22907255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.773 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937674 SAMN22903317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346042/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937675 SAMN22901360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.644 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937676 SAMN22907253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.240 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937677 SAMN22901359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.405 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937678 SAMN22906919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346233/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.638 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937679 SAMN22907122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.152 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937680 SAMN22907121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346236/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.900 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937681 SAMN22906918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346234/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.080 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937682 SAMN22903296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.416 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937683 SAMN22903297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937684 SAMN22903295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.419 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937685 SAMN22908579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.290 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937686 SAMN22908580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937687 SAMN22908578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346245/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937688 SAMN22908577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346246/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.514 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.293 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937689 SAMN22902182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346249/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.028 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937690 SAMN22906836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0346251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.767 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937691 SAMN22906837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0346250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.339 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937692 SAMN22906835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0346252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937693 SAMN22907886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.576 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937694 SAMN22907887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.691 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937695 SAMN22906834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0346256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937696 SAMN22902181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.067 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937697 SAMN22908576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.438 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937698 SAMN22908575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937699 SAMN22908574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.632 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937700 SAMN22908573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346264/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.785 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937701 SAMN22908572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937702 SAMN22908570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346267/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.234 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937703 SAMN22908571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937704 SAMN22904634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.029 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937705 SAMN22902179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346273/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.335 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937706 SAMN22902180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937707 SAMN22908713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0346275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.606 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937708 SAMN22903294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937709 SAMN22902178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937710 SAMN22904570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.612 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937711 SAMN22902150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937712 SAMN22902151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347433/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937713 SAMN22906824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937714 SAMN22906822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.071 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.988 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937715 SAMN22906823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937716 SAMN22906821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347440/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937717 SAMN22904569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347443/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.133 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937718 SAMN22902149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.529 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.990 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937719 SAMN22904888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.905 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937720 SAMN22904568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.668 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937721 SAMN22904887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937722 SAMN22901908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.067 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937723 SAMN22904886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.946 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937724 SAMN22907857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937725 SAMN22904567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.840 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937726 SAMN22907856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347457/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937727 SAMN22906083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937728 SAMN22903610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0347460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937729 SAMN22904566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.510 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937730 SAMN22904885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937731 SAMN22904565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.313 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937732 SAMN22901907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937733 SAMN22901906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.756 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937734 SAMN22904564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.514 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.130 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937735 SAMN22901905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.266 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937736 SAMN22901145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937737 SAMN22907089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937738 SAMN22904884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937739 SAMN22902148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347472/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.081 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.515 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937740 SAMN22903911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.818 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937741 SAMN22907855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347473/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.095 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.913 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937742 SAMN22907854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.531 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937743 SAMN22906668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.986 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937744 SAMN22903910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937745 SAMN22900816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.844 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937746 SAMN22900815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0348000/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.410 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937747 SAMN22900813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0348003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.543 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937748 SAMN22900814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0348001/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.023 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937749 SAMN22900812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0348005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.710 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937750 SAMN22906168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0348007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.181 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937751 SAMN22906667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0348008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.820 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937752 SAMN22906665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0348010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.480 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937753 SAMN22906666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0348009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.327 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937754 SAMN22906167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0348012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937755 SAMN22903909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0348011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937756 SAMN22906166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0348013/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.139 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937757 SAMN22903908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0348018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937758 SAMN22906165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0348020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.968 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937759 SAMN22906662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0348023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937760 SAMN22906664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0348021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937761 SAMN22906663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0348022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937762 SAMN22906820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937763 SAMN22901135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348028/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.950 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937764 SAMN22906078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0348027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.106 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937765 SAMN22906819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348030/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.451 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937766 SAMN22901900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.234 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937767 SAMN22901134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.612 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.6 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937768 SAMN22904522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937769 SAMN22908470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.148 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937770 SAMN22904523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937771 SAMN22908469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937772 SAMN22901899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.178 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937773 SAMN22908090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.19 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.599 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937774 SAMN22904521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.652 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937775 SAMN22908089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.576 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.291 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937776 SAMN22908087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349787/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.824 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.132 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937777 SAMN22908088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.572 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937778 SAMN22908086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349788/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.093 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937779 SAMN22908084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937780 SAMN22908083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.339 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937781 SAMN22908085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.014 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937782 SAMN22908082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349794/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.038 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937783 SAMN22908081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349795/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937784 SAMN22908080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937785 SAMN22908079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.665 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937786 SAMN22908077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349799/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.333 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937787 SAMN22908078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349798/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.321 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.006 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937788 SAMN22908075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937789 SAMN22908076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937790 SAMN22908074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937791 SAMN22908072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.762 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937792 SAMN22908073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349803/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.242 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937793 SAMN22903215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349805/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937794 SAMN22901257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349806/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.687 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937795 SAMN22901256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349807/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.057 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937796 SAMN22901255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.855 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937797 SAMN22903213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.807 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937798 SAMN22903214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.818 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937799 SAMN22903212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.132 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937800 SAMN22901253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.152 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937801 SAMN22901254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.639 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937802 SAMN22906864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.633 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937803 SAMN22906862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.644 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937804 SAMN22906863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349819/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.689 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937805 SAMN22906861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349821/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.741 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.589 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937806 SAMN22907583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.805 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937807 SAMN22907582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.163 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937808 SAMN22907712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.423 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937809 SAMN22905463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937810 SAMN22907713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937811 SAMN22907711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.670 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937812 SAMN22907710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.802 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937813 SAMN22907709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350042/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.208 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937814 SAMN22906588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937815 SAMN22906060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0350037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937816 SAMN22907581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937817 SAMN22906587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.736 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937818 SAMN22907580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.068 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937819 SAMN22907708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.027 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937820 SAMN22907707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937821 SAMN22907579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350049/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.127 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937822 SAMN22907706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.107 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.053 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937823 SAMN22907705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937824 SAMN22907578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.101 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.051 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937825 SAMN22906334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350053/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.697 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937826 SAMN22907576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350056/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.022 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937827 SAMN22907577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937828 SAMN22907704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350057/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.000 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937829 SAMN22907702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.120 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937830 SAMN22907701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.758 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937831 SAMN22907703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.684 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937832 SAMN22906333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.401 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937833 SAMN22907700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937834 SAMN22907575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.035 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937835 SAMN22907574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350065/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.328 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937836 SAMN22907699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937837 SAMN22907573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937838 SAMN22900774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350142/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.943 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937839 SAMN22900773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.159 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937840 SAMN22900772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.19 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937841 SAMN22900770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937842 SAMN22900769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350147/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.655 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937843 SAMN22900771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350145/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.955 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937844 SAMN22900768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350149/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937845 SAMN22900767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.269 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937846 SAMN22900766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350152/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.577 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937847 SAMN22900765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937848 SAMN22903002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350154/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.221 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937849 SAMN22903001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.718 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937850 SAMN22903000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937851 SAMN22902999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.828 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937852 SAMN22902998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350158/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.203 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937853 SAMN22902997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937854 SAMN22902996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350160/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.505 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937855 SAMN22900764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350161/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.101 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937856 SAMN22900763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937857 SAMN22902995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.026 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937858 SAMN22907426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350165/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.096 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937859 SAMN22907496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350167/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.694 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.684 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937860 SAMN22907695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.149 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937861 SAMN22907694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.984 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937862 SAMN22907821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0350170/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.763 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937863 SAMN22907562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350171/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937864 SAMN22905488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0350172/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937865 SAMN22907561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.124 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937866 SAMN22906325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.213 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937867 SAMN22906323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937868 SAMN22906324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350175/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937869 SAMN22906322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350178/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.900 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937870 SAMN22905199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344216/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937871 SAMN22904137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344217/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937872 SAMN22904136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.423 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937873 SAMN22904135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344220/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.409 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937874 SAMN22904134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937875 SAMN22904133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344222/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.134 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937876 SAMN22904131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344224/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937877 SAMN22904132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937878 SAMN22904130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344227/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.217 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937879 SAMN22903071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344225/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.828 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937880 SAMN22903070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344228/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937881 SAMN22903069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344229/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.986 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937882 SAMN22903068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344232/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937883 SAMN22905198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344234/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937884 SAMN22904129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.030 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937885 SAMN22903067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344233/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937886 SAMN22905196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937887 SAMN22905197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.247 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937888 SAMN22905195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344240/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937889 SAMN22904128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344236/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.526 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937890 SAMN22904127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.531 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937891 SAMN22904126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937892 SAMN22905194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344246/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.324 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.238 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937893 SAMN22905193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.189 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937894 SAMN22905192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344248/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.568 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937895 SAMN22905191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344249/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937896 SAMN22905190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.869 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937897 SAMN22905189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937898 SAMN22903066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.06 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.541 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937899 SAMN22903065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.452 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.578 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937900 SAMN22904125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.674 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937901 SAMN22904124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.252 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937902 SAMN22903990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.705 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.589 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937903 SAMN22903989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.108 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.171 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937904 SAMN22906697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0346497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.446 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937905 SAMN22903987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937906 SAMN22903988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.218 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937907 SAMN22903986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.466 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937908 SAMN22903985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937909 SAMN22903984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.362 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937910 SAMN22906201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937911 SAMN22903039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.485 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937912 SAMN22903983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.973 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937913 SAMN22900919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937914 SAMN22900917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346510/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937915 SAMN22900918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937916 SAMN22900916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.035 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.061 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937917 SAMN22900915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.601 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937918 SAMN22907804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.149 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937919 SAMN22904432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937920 SAMN22902056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352257/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.754 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.304 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937921 SAMN22904431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352268/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.066 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937922 SAMN22901808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352270/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.213 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937923 SAMN22901807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937924 SAMN22901806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937925 SAMN22901804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.249 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937926 SAMN22901805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352273/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.049 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937927 SAMN22908276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937928 SAMN22906998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937929 SAMN22906997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.198 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937930 SAMN22906996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.350 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937931 SAMN22906050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.040 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937932 SAMN22904794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.009 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937933 SAMN22902055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.294 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937934 SAMN22904430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.400 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937935 SAMN22906756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352307/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.315 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937936 SAMN22906608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC0352310/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.107 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937937 SAMN22906995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937938 SAMN22904428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.664 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937939 SAMN22904429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.516 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937940 SAMN22901050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352318/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.433 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937941 SAMN22901803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.56 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.831 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937942 SAMN22904793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352341/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.996 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937943 SAMN22905899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0352351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937944 SAMN22903199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0352350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.880 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937945 SAMN22905898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0352352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937946 SAMN22901802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937947 SAMN22902054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.571 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937948 SAMN22902053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.329 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937949 SAMN22902052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.77 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937950 SAMN22907749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.521 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937951 SAMN22904214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.656 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937952 SAMN22904213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343563/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.060 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937953 SAMN22903120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937954 SAMN22907602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937955 SAMN22906435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.625 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937956 SAMN22907601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937957 SAMN22903119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.045 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.512 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937958 SAMN22905270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937959 SAMN22905269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.596 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937960 SAMN22904212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937961 SAMN22906593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937962 SAMN22903118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937963 SAMN22905268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.809 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937964 SAMN22905267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.018 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937965 SAMN22904211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343576/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.944 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937966 SAMN22904210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.442 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937967 SAMN22904209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.350 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937968 SAMN22905265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.470 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937969 SAMN22905266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.947 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937970 SAMN22904208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937971 SAMN22904207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.209 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937972 SAMN22904206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.286 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937973 SAMN22903117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343585/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.617 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937974 SAMN22905264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.622 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937975 SAMN22905263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.636 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937976 SAMN22905262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.600 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937977 SAMN22904205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937978 SAMN22904204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343593/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937979 SAMN22904203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343594/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937980 SAMN22904201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937981 SAMN22904202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.841 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937982 SAMN22904200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937983 SAMN22905261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.581 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.337 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937984 SAMN22904199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343599/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.673 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937985 SAMN22904198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.984 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937987 SAMN22905260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.699 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937988 SAMN22903116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937989 SAMN22905259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.872 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937990 SAMN22901598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.709 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937991 SAMN22907658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.57 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.369 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937992 SAMN22906434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.041 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937993 SAMN22906433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.666 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937994 SAMN22903115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.043 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937995 SAMN22907543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0343616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937996 SAMN22900962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937997 SAMN22901597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937998 SAMN22900961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937999 SAMN22901595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938000 SAMN22901596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938001 SAMN22906432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938002 SAMN22906431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.432 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938003 SAMN22902886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938004 SAMN22906430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343625/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.016 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938005 SAMN22902887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938006 SAMN22906429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.801 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938007 SAMN22906428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938008 SAMN22906425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10937986 SAMN22904197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.800 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938009 SAMN22906426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343631/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938010 SAMN22906427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343630/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938011 SAMN22906424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.910 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938012 SAMN22906423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.090 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938013 SAMN22906422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938014 SAMN22906709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.276 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.199 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938015 SAMN22904009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.781 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938016 SAMN22906927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0345277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.398 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938017 SAMN22904008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345279/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.482 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.838 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938018 SAMN22904007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938019 SAMN22907176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345287/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938020 SAMN22906708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345286/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.326 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938021 SAMN22907175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345288/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.813 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938022 SAMN22907174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938023 SAMN22906707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345294/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.910 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938024 SAMN22904006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.640 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938025 SAMN22904005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.406 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.813 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938026 SAMN22904004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.131 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938027 SAMN22906706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345303/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.016 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938028 SAMN22904003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938029 SAMN22906926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0345306/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.069 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938030 SAMN22906705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345307/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.520 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938031 SAMN22906704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345309/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938032 SAMN22906925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0345310/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.471 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938033 SAMN22906702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345314/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.817 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938034 SAMN22906202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0345315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.032 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938035 SAMN22906703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345311/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.409 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938036 SAMN22904002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938037 SAMN22904001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345318/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938038 SAMN22904000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345319/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.610 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938039 SAMN22906701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345321/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.137 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938040 SAMN22906700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345322/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938041 SAMN22906699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.296 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938042 SAMN22903998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345325/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.207 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938043 SAMN22903997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345331/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.84 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.875 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938044 SAMN22903999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345324/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938045 SAMN22906698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0345330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.445 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938046 SAMN22901932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.119 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938047 SAMN22901931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938048 SAMN22904590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.073 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938049 SAMN22903626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0347092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.529 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938050 SAMN22906826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347093/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938051 SAMN22908708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0347094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.074 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938052 SAMN22904940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.043 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.496 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938053 SAMN22904939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.564 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.903 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938054 SAMN22904938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.779 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938055 SAMN22908505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.502 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938056 SAMN22907243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0347101/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938057 SAMN22901929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.11 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.806 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938058 SAMN22901930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938059 SAMN22907100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.041 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938060 SAMN22901166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.408 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938061 SAMN22901164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938062 SAMN22901165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347108/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938063 SAMN22907099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.576 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938064 SAMN22902833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0347112/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938065 SAMN22907867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347114/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938066 SAMN22900731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0347116/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938067 SAMN22907868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347113/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.679 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938068 SAMN22906098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938069 SAMN22900730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0347117/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.409 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.718 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938070 SAMN22906097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.862 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938071 SAMN22906096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938072 SAMN22905550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ND-CDC-LC0347122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938073 SAMN22901163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347124/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938074 SAMN22906095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.641 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.202 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938075 SAMN22906093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.610 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938076 SAMN22906094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938077 SAMN22906092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938078 SAMN22908445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.860 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938079 SAMN22908444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938080 SAMN22908443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348158/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.920 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938081 SAMN22908442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.025 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938082 SAMN22908440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938083 SAMN22908441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348161/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.084 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938084 SAMN22906075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0348175/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.247 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938085 SAMN22908439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348165/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938086 SAMN22906077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0348173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.496 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938087 SAMN22901130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348177/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.603 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938088 SAMN22906076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0348174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.581 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.588 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938089 SAMN22901129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348178/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.281 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.102 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938090 SAMN22904860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.979 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938091 SAMN22908438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.112 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938092 SAMN22904859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938093 SAMN22908437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938094 SAMN22908436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348192/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.617 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938095 SAMN22904858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.4 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938096 SAMN22901897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348198/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.949 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938097 SAMN22901898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348197/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938098 SAMN22901896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348201/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.559 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938099 SAMN22904857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.615 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938100 SAMN22907077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348205/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938101 SAMN22908434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.801 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938102 SAMN22908435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.777 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938103 SAMN22906074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0348214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.901 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938104 SAMN22902122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348215/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.679 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938105 SAMN22908767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938106 SAMN22908768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938107 SAMN22908766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348220/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938108 SAMN22908765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938109 SAMN22907237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0348226/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938110 SAMN22906293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.399 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938111 SAMN22906292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.056 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938112 SAMN22906290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.986 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938113 SAMN22906291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.524 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938114 SAMN22906289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350283/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.331 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938115 SAMN22902864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350288/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.573 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.983 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938116 SAMN22900761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.899 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938117 SAMN22904062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350292/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938118 SAMN22904061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350293/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.445 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938119 SAMN22904060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350294/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.77 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938120 SAMN22904059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.203 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938121 SAMN22904057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.869 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938122 SAMN22904058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938123 SAMN22902994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938124 SAMN22902992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.886 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938125 SAMN22902993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350300/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.059 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938126 SAMN22906288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350303/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.269 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938127 SAMN22902991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938128 SAMN22902989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.288 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938129 SAMN22902990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350304/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.392 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938130 SAMN22906287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350311/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.370 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938131 SAMN22904056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350306/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.694 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938132 SAMN22907633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350314/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.901 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.627 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938133 SAMN22907631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938134 SAMN22907632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.387 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938135 SAMN22906286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.792 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938136 SAMN22900760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350321/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.071 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.237 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938137 SAMN22906285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350319/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.223 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938138 SAMN22903850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350324/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.865 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938139 SAMN22903852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350322/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.695 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938140 SAMN22903851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.888 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938141 SAMN22905628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938142 SAMN22903849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350325/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938143 SAMN22905627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.460 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938144 SAMN22905626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351053/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.818 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938145 SAMN22901469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938146 SAMN22905625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.161 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938147 SAMN22905624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351057/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938148 SAMN22906246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.244 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938149 SAMN22902845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.190 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938150 SAMN22905623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351061/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.304 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938151 SAMN22905622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.619 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938152 SAMN22901468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.277 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938153 SAMN22905621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.886 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938154 SAMN22905620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938155 SAMN22902844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.213 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.098 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.010 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938156 SAMN22901467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.954 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938157 SAMN22905619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351080/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938158 SAMN22901466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.498 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938159 SAMN22902843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.056 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938160 SAMN22901465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.468 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938161 SAMN22905618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351081/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.618 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938162 SAMN22905617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351082/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938163 SAMN22905616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351083/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.402 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938164 SAMN22905615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.123 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938165 SAMN22905614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.578 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938166 SAMN22905613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938167 SAMN22905612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.649 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938168 SAMN22905611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351093/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.736 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938169 SAMN22905610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938170 SAMN22905609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351101/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.765 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938171 SAMN22905608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.778 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938172 SAMN22901464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351104/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.401 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.975 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938173 SAMN22908043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352806/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.467 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938174 SAMN22908044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352805/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.856 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938175 SAMN22905607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.253 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938176 SAMN22908042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352807/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.324 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938177 SAMN22908040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.519 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938178 SAMN22908041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938179 SAMN22908039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.76 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938180 SAMN22908038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.502 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938181 SAMN22908037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938182 SAMN22908036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.306 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.172 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938183 SAMN22908035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.4 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.081 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938184 SAMN22908034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938185 SAMN22908033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.911 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938186 SAMN22908031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352824/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.454 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938187 SAMN22908032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.310 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938188 SAMN22908030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938189 SAMN22908029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.613 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938190 SAMN22908027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938191 SAMN22908028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352828/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938192 SAMN22908026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352832/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.385 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938193 SAMN22908025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938194 SAMN22908024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938195 SAMN22908022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938196 SAMN22908023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352837/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938197 SAMN22908020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938198 SAMN22908021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.340 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938199 SAMN22908019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938200 SAMN22908018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.429 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938201 SAMN22908016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.599 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938202 SAMN22908015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938203 SAMN22908017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938204 SAMN22908013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352852/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938205 SAMN22907951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.508 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938206 SAMN22908014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938207 SAMN22907950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352968/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938208 SAMN22907949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352970/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.083 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938209 SAMN22907948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352971/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.457 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938210 SAMN22904386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938211 SAMN22904385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.502 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938212 SAMN22904761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352982/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.777 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938213 SAMN22904759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938214 SAMN22904760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.684 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938215 SAMN22904758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.699 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938216 SAMN22904384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.336 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938217 SAMN22904757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.082 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938218 SAMN22907204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0352990/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938219 SAMN22904383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352992/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.062 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938220 SAMN22902037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938221 SAMN22901786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938222 SAMN22903433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0352995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938223 SAMN22902036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938224 SAMN22902034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.328 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938225 SAMN22902035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352998/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.931 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938226 SAMN22903416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0353000/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938227 SAMN22903399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0353001/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938228 SAMN22901784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.120 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938229 SAMN22902033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.671 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938230 SAMN22901785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.372 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.452 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938231 SAMN22901782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.615 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938232 SAMN22901783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.824 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938233 SAMN22901781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.543 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.267 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938234 SAMN22901033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353014/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938235 SAMN22901032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.368 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938236 SAMN22901031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.050 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938237 SAMN22901443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351261/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938238 SAMN22906975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.149 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938239 SAMN22907619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0351260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938240 SAMN22907618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0351265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938241 SAMN22906233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351268/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.418 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.863 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938242 SAMN22906234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351267/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.421 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938243 SAMN22906232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351269/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.343 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938244 SAMN22905576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938245 SAMN22905575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.439 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938246 SAMN22902842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.016 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938247 SAMN22905574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938248 SAMN22906229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938249 SAMN22906230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.874 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938250 SAMN22906231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.736 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.382 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938251 SAMN22902082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938252 SAMN22906228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.348 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938253 SAMN22906227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351292/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938254 SAMN22905535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938255 SAMN22905536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938256 SAMN22905980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938257 SAMN22906816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938258 SAMN22905979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938259 SAMN22905978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348472/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938260 SAMN22905977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938261 SAMN22905976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938262 SAMN22905975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938263 SAMN22905974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348481/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938264 SAMN22905972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938265 SAMN22905973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938266 SAMN22905971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348486/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938267 SAMN22906815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938268 SAMN22906814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938269 SAMN22906813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938270 SAMN22906811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938271 SAMN22906812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938272 SAMN22905534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938273 SAMN22905533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938274 SAMN22906810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348510/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938275 SAMN22905532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938276 SAMN22906809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938277 SAMN22906808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938278 SAMN22906807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938279 SAMN22906806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938280 SAMN22906805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938281 SAMN22906804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938282 SAMN22906803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348520/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938283 SAMN22905970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938284 SAMN22905968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938285 SAMN22905969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938286 SAMN22907373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938287 SAMN22907372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938288 SAMN22907371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938289 SAMN22907369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938290 SAMN22902120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348544/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938291 SAMN22907370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348542/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938292 SAMN22905531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348545/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938293 SAMN22905529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348547/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938294 SAMN22905530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938295 SAMN22905527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348549/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938296 SAMN22905528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938297 SAMN22905525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938298 SAMN22905526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938299 SAMN22905524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938300 SAMN22906802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938301 SAMN22906801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938302 SAMN22906800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938303 SAMN22905967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348563/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938304 SAMN22905966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938305 SAMN22905965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938306 SAMN22905964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938307 SAMN22905963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938308 SAMN22905961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938309 SAMN22905962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938310 SAMN22905960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938311 SAMN22905959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938312 SAMN22905958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938313 SAMN22905523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938314 SAMN22905522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938315 SAMN22905957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938316 SAMN22905520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348590/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938317 SAMN22905521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938318 SAMN22905517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938319 SAMN22905519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348591/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938320 SAMN22905518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938321 SAMN22905516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938322 SAMN22903262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938323 SAMN22903261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938324 SAMN22903260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938325 SAMN22903259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348605/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938326 SAMN22903258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938327 SAMN22903257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938328 SAMN22903256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938329 SAMN22903254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938330 SAMN22903255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938331 SAMN22903253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938332 SAMN22903252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938333 SAMN22903251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938334 SAMN22903249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938335 SAMN22903250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938336 SAMN22903248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938337 SAMN22905956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938338 SAMN22905955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938339 SAMN22905954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938340 SAMN22905953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938341 SAMN22905952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938342 SAMN22905951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348630/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938343 SAMN22905950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938344 SAMN22905949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938345 SAMN22905946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938346 SAMN22905947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938347 SAMN22905948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938348 SAMN22905945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938349 SAMN22907368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938350 SAMN22908411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.222 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938351 SAMN22908409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.081 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.865 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938352 SAMN22908410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938353 SAMN22904832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938354 SAMN22904833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349264/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938355 SAMN22904834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938356 SAMN22908408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349261/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938357 SAMN22902098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938358 SAMN22907840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349270/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.729 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938359 SAMN22908407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349267/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.516 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938360 SAMN22908318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349269/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.439 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938361 SAMN22908317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.577 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938362 SAMN22901108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938363 SAMN22901107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938364 SAMN22901106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.715 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938365 SAMN22905846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.578 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938366 SAMN22901105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.920 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938367 SAMN22905912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0349281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.891 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938368 SAMN22907030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.184 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.516 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938369 SAMN22907029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349283/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.375 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938370 SAMN22907028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349284/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938371 SAMN22907027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349285/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.919 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938372 SAMN22906870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349287/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.779 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938373 SAMN22902097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938374 SAMN22907343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0349294/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.067 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.129 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938375 SAMN22906072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.165 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.508 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938376 SAMN22901104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349296/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.836 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938377 SAMN22901103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938378 SAMN22901875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.891 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938379 SAMN22901874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.093 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938380 SAMN22901873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349300/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.262 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938381 SAMN22901036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.631 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938382 SAMN22901872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.047 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938383 SAMN22905896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0352645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.4 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938384 SAMN22906753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938385 SAMN22906754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938386 SAMN22906752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938387 SAMN22905895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0352651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.943 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938388 SAMN22906981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.901 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938389 SAMN22906032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938390 SAMN22906031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.571 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938391 SAMN22904408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.588 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938392 SAMN22904409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352658/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.353 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938393 SAMN22904407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.114 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938394 SAMN22903198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0352665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.522 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.941 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938395 SAMN22906980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.17 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938396 SAMN22906979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.647 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938397 SAMN22901035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.026 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938398 SAMN22901034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352670/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938399 SAMN22906978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.670 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938400 SAMN22908252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352673/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.194 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938401 SAMN22908251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.281 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938402 SAMN22908250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.866 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938403 SAMN22908249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.866 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938404 SAMN22904406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.577 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938405 SAMN22906751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938406 SAMN22903453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0352680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938407 SAMN22904769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352681/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.462 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938408 SAMN22904768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352682/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938409 SAMN22904767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.276 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.864 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938410 SAMN22904405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.166 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938411 SAMN22904404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.280 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938412 SAMN22908248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352691/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938413 SAMN22904403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352688/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938414 SAMN22906026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.320 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938415 SAMN22906968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.900 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938416 SAMN22901027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353073/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938417 SAMN22907791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.238 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938418 SAMN22902029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.833 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.114 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938419 SAMN22902028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.558 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938420 SAMN22908698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0353086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.57 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.528 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938421 SAMN22901780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.081 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.630 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938422 SAMN22906025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.034 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938423 SAMN22901779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353089/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.725 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938424 SAMN22906024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938425 SAMN22906023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.248 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938426 SAMN22906022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938427 SAMN22908233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938428 SAMN22908231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353104/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.432 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938429 SAMN22908232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938430 SAMN22904752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938431 SAMN22908230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.475 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938432 SAMN22908229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938433 SAMN22904751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938434 SAMN22904750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.704 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938435 SAMN22904749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353112/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.074 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938436 SAMN22905480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0353118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938437 SAMN22901778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938438 SAMN22901777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938439 SAMN22901776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938440 SAMN22902266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0353122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.832 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.967 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938441 SAMN22906021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353123/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938442 SAMN22901026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938443 SAMN22906967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.091 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938444 SAMN22901775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353129/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938445 SAMN22901774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938446 SAMN22907661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342730/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.172 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938447 SAMN22901661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938448 SAMN22901660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938449 SAMN22905777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342733/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.835 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938450 SAMN22906461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.936 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938451 SAMN22906460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.627 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938452 SAMN22906459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342736/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.102 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938453 SAMN22905776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342737/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.696 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938454 SAMN22901659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.286 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938455 SAMN22905775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938456 SAMN22905774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.030 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938457 SAMN22905773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.705 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938458 SAMN22905772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.033 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938459 SAMN22901658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938460 SAMN22901657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.375 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938461 SAMN22901656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938462 SAMN22901655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.846 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938463 SAMN22901654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.911 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938464 SAMN22905771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.624 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938465 SAMN22905770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342763/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938466 SAMN22905769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.589 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938467 SAMN22905768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342768/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.672 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938468 SAMN22905767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342769/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.696 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938469 SAMN22905766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.119 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938470 SAMN22906458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342774/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938471 SAMN22902894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.081 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938472 SAMN22901653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.485 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938473 SAMN22905765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342781/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.011 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938474 SAMN22905764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.445 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938475 SAMN22901652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.275 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938476 SAMN22905763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.023 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938477 SAMN22906457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938478 SAMN22904292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343269/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.664 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.740 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938479 SAMN22904291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343270/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.462 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938480 SAMN22904290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.720 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938481 SAMN22904289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.939 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938482 SAMN22904288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343273/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938483 SAMN22904287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938484 SAMN22906447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.790 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938485 SAMN22906596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.469 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938486 SAMN22906595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.942 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938487 SAMN22901613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.300 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938488 SAMN22901612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343279/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.584 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938489 SAMN22901611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938490 SAMN22901610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.550 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938491 SAMN22901609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.263 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.652 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938492 SAMN22901608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343284/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938493 SAMN22907759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343286/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938494 SAMN22901607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343287/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938495 SAMN22901606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343288/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.120 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938496 SAMN22901605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938497 SAMN22901604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343290/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938498 SAMN22906446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938499 SAMN22901603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938500 SAMN22901602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938501 SAMN22903165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938502 SAMN22906445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343300/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938503 SAMN22901601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.782 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938504 SAMN22907659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938505 SAMN22902888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.691 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938506 SAMN22903164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343308/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.258 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938507 SAMN22906444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343310/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938508 SAMN22906443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343311/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938509 SAMN22901600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343313/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938510 SAMN22901193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.449 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938511 SAMN22905000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345885/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.746 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938512 SAMN22904999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345886/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.062 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938513 SAMN22904998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.869 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.620 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938514 SAMN22904997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.905 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938515 SAMN22901962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345889/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938516 SAMN22904666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345890/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.900 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938517 SAMN22904665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.064 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938518 SAMN22904664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345895/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938519 SAMN22904663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345896/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.547 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938520 SAMN22904662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345897/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.287 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938521 SAMN22904661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.726 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938522 SAMN22904660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345899/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.572 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938523 SAMN22904659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345901/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938524 SAMN22907145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.692 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938525 SAMN22907144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345903/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.686 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938526 SAMN22904658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345904/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.299 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938527 SAMN22904657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345905/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938528 SAMN22904656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.667 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938529 SAMN22904655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345908/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.603 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938530 SAMN22901961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345912/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.795 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938531 SAMN22901398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345915/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.564 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938532 SAMN22907270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345916/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.719 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938533 SAMN22905875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345918/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.178 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.650 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938534 SAMN22907142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345920/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938535 SAMN22907143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938536 SAMN22901192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345921/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.954 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938537 SAMN22903334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.308 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938538 SAMN22903333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345925/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.011 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938539 SAMN22901397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345926/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.129 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938540 SAMN22907269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345927/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938541 SAMN22903332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345928/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938542 SAMN22901317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.387 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.511 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938543 SAMN22901316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.959 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938544 SAMN22903290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346774/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.736 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.587 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938545 SAMN22901315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.625 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938546 SAMN22904970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346778/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938547 SAMN22901175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.162 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938548 SAMN22901174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938549 SAMN22907884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346787/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938550 SAMN22907883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346788/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.926 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938551 SAMN22906114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938552 SAMN22904969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346792/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.683 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938553 SAMN22906113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938554 SAMN22904967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.577 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938555 SAMN22904968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.427 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938556 SAMN22907882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346799/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938557 SAMN22904966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346798/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.650 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938558 SAMN22906112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.122 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938559 SAMN22906111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.544 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938560 SAMN22906110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.536 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938561 SAMN22906109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346805/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938562 SAMN22901946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.940 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938563 SAMN22901945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.125 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938564 SAMN22901944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.889 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938565 SAMN22901943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.703 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938566 SAMN22904965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.226 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938567 SAMN22904964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346819/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.775 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938568 SAMN22904963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938569 SAMN22908546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346822/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.721 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938570 SAMN22908545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.730 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938571 SAMN22904610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346826/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.326 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938572 SAMN22904609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938573 SAMN22904962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346828/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.817 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938574 SAMN22905428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350927/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.543 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938575 SAMN22906517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350928/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.980 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938576 SAMN22905427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350929/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938577 SAMN22905426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938578 SAMN22905425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938579 SAMN22905424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.645 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938580 SAMN22905423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350933/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938581 SAMN22905422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350934/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938582 SAMN22905421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350935/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938583 SAMN22905420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938584 SAMN22902902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350937/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938585 SAMN22902901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.581 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938586 SAMN22906516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350939/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938587 SAMN22906515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350940/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.110 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938588 SAMN22906514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.017 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938589 SAMN22906513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938590 SAMN22902984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.868 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938591 SAMN22907559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.266 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938592 SAMN22907558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.906 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938593 SAMN22907557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938594 SAMN22907556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.683 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938595 SAMN22902909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350832/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.575 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938596 SAMN22906537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938597 SAMN22902907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.490 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938598 SAMN22902908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350837/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.387 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938599 SAMN22906223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC0350839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.431 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938600 SAMN22906536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938601 SAMN22906535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.000 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938602 SAMN22906534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938603 SAMN22906533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.393 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938604 SAMN22906532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938605 SAMN22906531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350845/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.440 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938606 SAMN22906530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.200 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938607 SAMN22906529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.380 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938608 SAMN22905436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350849/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.452 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938609 SAMN22907471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.317 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938610 SAMN22906528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938611 SAMN22902906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350852/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.199 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.888 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938612 SAMN22905435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350853/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938613 SAMN22905434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350854/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938614 SAMN22906527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938615 SAMN22906526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938616 SAMN22906525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.308 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938617 SAMN22906524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350858/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.11 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.151 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938618 SAMN22906523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.623 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938619 SAMN22906522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938620 SAMN22905677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350863/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.956 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938621 SAMN22905676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.059 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938622 SAMN22905675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938623 SAMN22905674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.444 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938624 SAMN22905673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350867/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938625 SAMN22905671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.323 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938626 SAMN22905672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350868/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938627 SAMN22908311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.925 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938628 SAMN22908310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.442 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.077 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938629 SAMN22902076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.085 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938630 SAMN22905906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.087 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938631 SAMN22907019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.089 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.629 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938632 SAMN22907018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.488 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938633 SAMN22902075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.158 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938634 SAMN22905905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.257 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938635 SAMN22908309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351472/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938636 SAMN22908308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.270 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938637 SAMN22902074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938638 SAMN22905904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.383 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938639 SAMN22905903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938640 SAMN22907017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351484/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938641 SAMN22904451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.821 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938642 SAMN22904450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351488/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938643 SAMN22904449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.425 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938644 SAMN22904448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.233 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938645 SAMN22908307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.090 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938646 SAMN22902073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938647 SAMN22902072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351697/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.772 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938648 SAMN22907820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351700/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.620 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938649 SAMN22907819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938650 SAMN22907817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351705/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938651 SAMN22907818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938652 SAMN22907816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.420 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938653 SAMN22904447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938654 SAMN22908069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0351711/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.679 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938655 SAMN22907815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938656 SAMN22907814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938657 SAMN22907813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.352 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938658 SAMN22907812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351716/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.022 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938659 SAMN22904370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938660 SAMN22904369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353192/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.828 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938661 SAMN22902021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938662 SAMN22902020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353199/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.280 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938663 SAMN22908225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938664 SAMN22908226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353200/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938665 SAMN22901228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0353207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938666 SAMN22908224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.485 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.823 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938667 SAMN22902019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938668 SAMN22908223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353208/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.866 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938669 SAMN22902018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.447 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938670 SAMN22902016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353216/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938671 SAMN22906964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.496 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938672 SAMN22902017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353215/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.015 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938673 SAMN22902015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938674 SAMN22905892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0353222/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938675 SAMN22906963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938676 SAMN22902014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938677 SAMN22906748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0353223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.706 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938678 SAMN22904368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353224/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.587 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.458 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938679 SAMN22904366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353228/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938680 SAMN22906018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938681 SAMN22908222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.528 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938682 SAMN22904367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353225/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938683 SAMN22908221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353236/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.041 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938684 SAMN22908220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.999 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938685 SAMN22902013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938686 SAMN22902012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.221 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938687 SAMN22906747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0353240/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938688 SAMN22904365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.812 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938689 SAMN22904364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.704 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938690 SAMN22901599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343314/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938691 SAMN22904363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.773 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938692 SAMN22906442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938693 SAMN22906440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343319/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.333 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938695 SAMN22905379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343325/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.492 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938696 SAMN22906594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.250 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938697 SAMN22903163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343326/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938698 SAMN22905378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343328/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.188 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938699 SAMN22904286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.934 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938700 SAMN22903162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343329/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.534 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938701 SAMN22904285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.802 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.762 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938702 SAMN22905377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343333/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.805 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938703 SAMN22905376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.943 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.481 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938704 SAMN22903161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343342/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938705 SAMN22902248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0343341/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938706 SAMN22905375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938707 SAMN22903160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938708 SAMN22903159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343348/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938709 SAMN22903158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343349/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938710 SAMN22904284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938694 SAMN22906441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938711 SAMN22905374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.865 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938712 SAMN22905373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343353/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.341 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938713 SAMN22903157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938714 SAMN22903156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.649 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938715 SAMN22903155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.920 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938716 SAMN22905372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343357/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938717 SAMN22906439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.314 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938718 SAMN22904283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343360/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.005 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938719 SAMN22905371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.218 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938720 SAMN22905370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938721 SAMN22904282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.782 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938722 SAMN22907453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344391/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.260 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938723 SAMN22904281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938724 SAMN22907452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344392/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.509 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938725 SAMN22907538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.954 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938726 SAMN22907537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938727 SAMN22907536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344395/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938728 SAMN22907451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344397/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938729 SAMN22907535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.048 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938730 SAMN22907534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344399/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.527 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938731 SAMN22907450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344400/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.356 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938732 SAMN22907449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.564 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938733 SAMN22905890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0344404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.705 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938734 SAMN22903052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.257 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938735 SAMN22906612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC0344405/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.444 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938736 SAMN22900958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.975 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938737 SAMN22900957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.928 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938738 SAMN22907533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.750 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938739 SAMN22907532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938740 SAMN22907531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938741 SAMN22907448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.593 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938742 SAMN22907447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344413/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.435 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938743 SAMN22907446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344414/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.465 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938744 SAMN22907445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.910 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938745 SAMN22902264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0344416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.893 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938746 SAMN22908738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0344418/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.937 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938747 SAMN22907530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938748 SAMN22905889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0344422/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.784 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938749 SAMN22907529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344425/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.257 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.622 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.370 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938750 SAMN22907444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344426/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.055 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938751 SAMN22902263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0344427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.886 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938752 SAMN22907443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344428/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.287 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938753 SAMN22908737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0344429/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.791 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938754 SAMN22907528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.827 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938755 SAMN22908450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.306 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938756 SAMN22904509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938757 SAMN22908449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938758 SAMN22904867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.002 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938759 SAMN22904866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348100/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.097 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.392 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938760 SAMN22904864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938761 SAMN22904865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.292 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938762 SAMN22904863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348104/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.917 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938763 SAMN22901133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.186 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938764 SAMN22901132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.966 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938765 SAMN22907078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348108/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.523 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938766 SAMN22907079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.224 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938767 SAMN22901131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938768 SAMN22904862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938769 SAMN22906611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC0348111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.469 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938770 SAMN22904861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938771 SAMN22904508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348124/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 19.642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938772 SAMN22902129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938773 SAMN22902128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938774 SAMN22906818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.530 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938775 SAMN22902127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.107 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938776 SAMN22904507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.434 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938777 SAMN22904506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.170 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938778 SAMN22901296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0348133/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.179 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938779 SAMN22904505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.6 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.010 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938780 SAMN22902126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938781 SAMN22902125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.827 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938782 SAMN22902124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938783 SAMN22908448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348142/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.597 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938784 SAMN22908447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.940 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938785 SAMN22908446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.987 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938786 SAMN22902123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.926 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938787 SAMN22907367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938788 SAMN22907366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938789 SAMN22906799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938790 SAMN22906798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938791 SAMN22906797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938792 SAMN22906796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938793 SAMN22906795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938794 SAMN22906794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938795 SAMN22906793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348661/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938796 SAMN22906792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938797 SAMN22906791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938798 SAMN22906790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348664/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938799 SAMN22906789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938800 SAMN22905944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938801 SAMN22905943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938802 SAMN22905942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938803 SAMN22907365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938804 SAMN22905941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938805 SAMN22907364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348682/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938806 SAMN22905515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938807 SAMN22905514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348685/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938808 SAMN22905513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938809 SAMN22905511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348690/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938810 SAMN22905512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348688/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938811 SAMN22905510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348691/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938812 SAMN22905509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938813 SAMN22905508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938814 SAMN22905506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938815 SAMN22905507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938816 SAMN22906788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938817 SAMN22906787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348700/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938818 SAMN22906786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938819 SAMN22908300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.311 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938820 SAMN22908299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.667 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938821 SAMN22908298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.780 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938822 SAMN22908297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938823 SAMN22901819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938824 SAMN22901818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938825 SAMN22901817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.552 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.995 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938826 SAMN22908296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.820 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938827 SAMN22908295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.907 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938828 SAMN22902065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.981 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938829 SAMN22902066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.177 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938830 SAMN22905838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0352076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.636 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938831 SAMN22902064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.256 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938832 SAMN22906760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352081/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938833 SAMN22902826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0352083/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938834 SAMN22906055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352082/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.810 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938835 SAMN22901056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.256 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938836 SAMN22906146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0352090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.881 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938837 SAMN22901055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.630 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938838 SAMN22906054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.264 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938839 SAMN22902063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938840 SAMN22902062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938841 SAMN22908294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938842 SAMN22908293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938843 SAMN22908292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.406 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938844 SAMN22908291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352100/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.874 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.439 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938845 SAMN22908290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.390 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938846 SAMN22908289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938847 SAMN22904805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.570 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938848 SAMN22904804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352108/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938849 SAMN22900740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0352113/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.376 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938850 SAMN22900739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0352115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938851 SAMN22901493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938852 SAMN22905662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.797 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938853 SAMN22905661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938854 SAMN22907623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350966/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.094 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938855 SAMN22901492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350967/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.273 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938856 SAMN22901491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350968/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.884 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938857 SAMN22905660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350969/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.55 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938858 SAMN22901490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350970/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.000 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938859 SAMN22905659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350972/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.284 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938860 SAMN22905658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350974/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938861 SAMN22905657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350975/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.678 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938862 SAMN22905656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938863 SAMN22905655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350978/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938864 SAMN22905653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350980/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.920 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938865 SAMN22905654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350979/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.718 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938866 SAMN22905652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938867 SAMN22905651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.856 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938868 SAMN22901489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938869 SAMN22905650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938870 SAMN22901488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.807 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938871 SAMN22901487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.689 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938872 SAMN22906249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.342 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938873 SAMN22901486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938874 SAMN22901484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350992/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.846 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938875 SAMN22901483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938876 SAMN22901485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938877 SAMN22901482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.127 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938878 SAMN22907622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938879 SAMN22901481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.165 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938880 SAMN22905649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938881 SAMN22905648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351000/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.649 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.014 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938882 SAMN22905647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.683 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938883 SAMN22906368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.209 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938884 SAMN22906367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938885 SAMN22906366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.118 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938886 SAMN22906365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.761 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.847 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938887 SAMN22906364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.615 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938888 SAMN22901525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938889 SAMN22901524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.585 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.974 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938890 SAMN22905710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.878 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938891 SAMN22901430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0343961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.706 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938892 SAMN22904193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938893 SAMN22904192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938894 SAMN22907641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.088 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938895 SAMN22905709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.688 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938896 SAMN22905708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343966/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.112 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938897 SAMN22901523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343967/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938898 SAMN22906363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343968/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938899 SAMN22906362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343969/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.894 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.542 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938900 SAMN22906361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343973/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938901 SAMN22905243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343974/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.030 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938902 SAMN22905242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343975/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938903 SAMN22906360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.874 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938904 SAMN22905241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343977/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938905 SAMN22905240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343978/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.194 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938906 SAMN22905239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343979/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.585 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938907 SAMN22903105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343980/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.319 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.180 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938908 SAMN22905238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.880 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938909 SAMN22906359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343982/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.599 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938910 SAMN22904191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.949 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938911 SAMN22906358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.039 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938912 SAMN22905236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.471 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938913 SAMN22905237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.216 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938914 SAMN22905235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938915 SAMN22908640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.604 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938916 SAMN22907921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.180 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938917 SAMN22902214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.998 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938918 SAMN22902213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.610 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938919 SAMN22908719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345113/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.270 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938920 SAMN22903740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0345112/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.635 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938921 SAMN22905082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345114/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938922 SAMN22905081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938923 SAMN22905080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345116/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.823 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938924 SAMN22905079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345117/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.485 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938925 SAMN22905078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.738 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.753 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938926 SAMN22907671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.900 lineage/clade name AY.4.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938927 SAMN22905452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350730/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938928 SAMN22902935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.068 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.079 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938929 SAMN22905450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938930 SAMN22905451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350733/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.401 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938931 SAMN22905449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.734 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938932 SAMN22902934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350736/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938933 SAMN22907670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350737/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.213 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.771 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938934 SAMN22906577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.458 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938935 SAMN22902933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.202 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938936 SAMN22902932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.320 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938937 SAMN22902931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938938 SAMN22902930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938939 SAMN22902929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938940 SAMN22902928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350745/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938941 SAMN22906576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.551 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938942 SAMN22906575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350747/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.587 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938943 SAMN22906574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350748/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938944 SAMN22902927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350749/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.925 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938945 SAMN22902926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350750/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.739 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938946 SAMN22902925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350751/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.403 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938947 SAMN22901480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.625 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.160 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938948 SAMN22901479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351004/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.990 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938949 SAMN22905646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.374 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938950 SAMN22905645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.802 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938951 SAMN22905644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938952 SAMN22905643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.920 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938953 SAMN22901478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.547 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938954 SAMN22905642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.835 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938955 SAMN22905641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351013/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938956 SAMN22905640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351014/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.645 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938957 SAMN22905639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.418 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.778 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938958 SAMN22901477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.023 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938959 SAMN22906221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC0351018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.252 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938960 SAMN22906248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.534 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938961 SAMN22906247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938962 SAMN22905638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.344 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938963 SAMN22905637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351024/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.977 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938964 SAMN22905636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938965 SAMN22905635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.879 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.849 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938966 SAMN22905634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351028/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.655 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938967 SAMN22905633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938968 SAMN22905632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351032/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938969 SAMN22901476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938970 SAMN22901475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.900 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938971 SAMN22905631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.950 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938972 SAMN22901474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351038/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.635 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938973 SAMN22901473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.437 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938974 SAMN22901471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.339 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938975 SAMN22901472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.224 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938976 SAMN22905630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.130 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938977 SAMN22901470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.694 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938978 SAMN22905629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351049/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938979 SAMN22902893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342795/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938980 SAMN22905762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938981 SAMN22901651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.437 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938982 SAMN22905761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.569 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938983 SAMN22905760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342813/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.812 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938984 SAMN22901650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.460 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938985 SAMN22901649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342821/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938986 SAMN22900988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0342825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.684 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.439 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938987 SAMN22906456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938988 SAMN22905759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.891 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938989 SAMN22901648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.352 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938990 SAMN22905758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.553 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938991 SAMN22901647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.139 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938992 SAMN22905757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938993 SAMN22906455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938994 SAMN22905756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.525 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938995 SAMN22905755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938996 SAMN22901646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938997 SAMN22901645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342849/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.343 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.002 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938998 SAMN22901644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.102 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10938999 SAMN22905754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342853/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939000 SAMN22901643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342854/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939001 SAMN22905753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.879 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939002 SAMN22905752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.237 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939003 SAMN22901642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.933 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939004 SAMN22901641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939005 SAMN22905751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342863/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.270 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939006 SAMN22902892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.623 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.427 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939007 SAMN22901640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.649 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939008 SAMN22905750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342868/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939009 SAMN22905749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.992 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939010 SAMN22905748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342873/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.327 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939011 SAMN22901706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.456 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939012 SAMN22901705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939013 SAMN22905834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939014 SAMN22905833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.901 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939015 SAMN22906503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.095 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939016 SAMN22906502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939017 SAMN22906501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342473/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939018 SAMN22906500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939019 SAMN22906499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.302 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939020 SAMN22906498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.549 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939021 SAMN22906497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.055 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939022 SAMN22906496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342480/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939023 SAMN22905832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342481/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939024 SAMN22905831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342484/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939025 SAMN22907781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0342485/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.778 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939026 SAMN22905830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.157 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.135 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939027 SAMN22905829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.471 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939028 SAMN22905828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939029 SAMN22905827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.420 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939030 SAMN22905826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.863 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939031 SAMN22901704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939032 SAMN22905825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.684 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939033 SAMN22906495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.736 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939034 SAMN22901703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.909 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939035 SAMN22905824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939036 SAMN22905823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342504/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.497 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939037 SAMN22906494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939038 SAMN22901702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.741 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939039 SAMN22906493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.484 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939040 SAMN22907667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939041 SAMN22901701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342510/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.310 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939042 SAMN22906396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.381 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939043 SAMN22907666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.161 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939044 SAMN22902880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343751/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939045 SAMN22907924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0343752/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939046 SAMN22902879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939047 SAMN22901573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.140 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939048 SAMN22903113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939049 SAMN22903112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.390 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939050 SAMN22905254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343758/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.826 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939051 SAMN22905253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343760/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.100 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939052 SAMN22907748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.402 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.873 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939053 SAMN22907600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.364 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939054 SAMN22905252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.957 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939055 SAMN22903111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.028 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939056 SAMN22905251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343766/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.035 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939057 SAMN22905250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343767/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.418 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939058 SAMN22907599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343769/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.828 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939059 SAMN22907598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.442 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939060 SAMN22907597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343771/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.369 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939061 SAMN22903110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939062 SAMN22907596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939063 SAMN22907595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343774/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939064 SAMN22906395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.788 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939065 SAMN22907594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.675 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939066 SAMN22906144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0343777/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939067 SAMN22905249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939068 SAMN22904196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343781/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.963 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939069 SAMN22907747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343780/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.022 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939070 SAMN22907746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939071 SAMN22905248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.508 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939072 SAMN22907745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939073 SAMN22907593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.684 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939074 SAMN22907592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.052 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939075 SAMN22908544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.610 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939076 SAMN22908543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.189 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939077 SAMN22908542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.467 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939078 SAMN22904608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346833/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.030 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939079 SAMN22908541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939080 SAMN22908540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.920 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939081 SAMN22908539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.000 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939082 SAMN22908538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.926 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.109 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939083 SAMN22901942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.358 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.775 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939084 SAMN22901941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.960 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939085 SAMN22908537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.999 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939086 SAMN22908536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.831 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939087 SAMN22901173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939088 SAMN22907881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.200 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939089 SAMN22900733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0346857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.193 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939090 SAMN22907880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.965 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939091 SAMN22904607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.106 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939092 SAMN22906108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939093 SAMN22904961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346867/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939094 SAMN22904606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.404 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939095 SAMN22908535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346868/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939096 SAMN22908710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0346869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939097 SAMN22903643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0346871/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.288 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.034 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939098 SAMN22902167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.151 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939099 SAMN22908534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346875/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.423 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.389 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939100 SAMN22908533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346877/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939101 SAMN22908532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346878/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939102 SAMN22908531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939103 SAMN22908530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346880/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939104 SAMN22908529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346881/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.348 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.568 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939105 SAMN22904960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 99 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.097 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939106 SAMN22901940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939107 SAMN22903025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347826/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.833 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.383 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939108 SAMN22903023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.271 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939109 SAMN22903024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347828/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.952 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.177 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939110 SAMN22903022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.947 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.023 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939111 SAMN22903021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.843 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939112 SAMN22903020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347832/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.090 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939113 SAMN22904872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347834/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.210 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939114 SAMN22904871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939115 SAMN22904870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.879 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939116 SAMN22904869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939117 SAMN22904868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.49 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939118 SAMN22901137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939119 SAMN22906897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347845/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.651 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939120 SAMN22906896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.695 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939121 SAMN22901136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939122 SAMN22903935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347849/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939123 SAMN22906679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.838 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939124 SAMN22900839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.361 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939125 SAMN22900838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347853/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.823 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939126 SAMN22903934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.161 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.343 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939127 SAMN22906678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.927 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939128 SAMN22903933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347858/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.362 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939129 SAMN22900837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.958 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939130 SAMN22906677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.497 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.474 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939131 SAMN22903932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.224 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939132 SAMN22906895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.351 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939133 SAMN22903931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939134 SAMN22903930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.136 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939135 SAMN22903929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.177 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.526 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939136 SAMN22900836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347874/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.175 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939137 SAMN22900835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347876/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.888 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939138 SAMN22900834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347877/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.295 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939139 SAMN22905851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0348289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939140 SAMN22907232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0348291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939141 SAMN22903273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348296/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939142 SAMN22905850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0348290/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939143 SAMN22903272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939144 SAMN22903271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939145 SAMN22903270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348300/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939146 SAMN22903269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939147 SAMN22908750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939148 SAMN22908749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348303/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939149 SAMN22908748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348304/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939150 SAMN22908747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348307/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939151 SAMN22903267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348311/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939152 SAMN22903268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348310/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939153 SAMN22903266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348312/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939154 SAMN22902121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939155 SAMN22903543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0348317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.887 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939156 SAMN22907076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348320/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.480 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939157 SAMN22907075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348321/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939158 SAMN22907073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939159 SAMN22907074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348322/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.387 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.974 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939160 SAMN22904856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348325/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939161 SAMN22904504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348328/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939162 SAMN22904503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348329/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.435 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939163 SAMN22901895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348333/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.068 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939164 SAMN22901894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939165 SAMN22901893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.147 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939166 SAMN22901892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.791 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939167 SAMN22904502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.087 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939168 SAMN22901891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348340/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.768 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939169 SAMN22904501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348344/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.105 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939170 SAMN22904500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348345/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.606 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939171 SAMN22905596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351188/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.742 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939172 SAMN22905595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.635 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939173 SAMN22901452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939174 SAMN22905594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351192/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939175 SAMN22905593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939176 SAMN22905592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351194/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.432 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939177 SAMN22905591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939178 SAMN22905590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351199/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939179 SAMN22905588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939180 SAMN22905587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351205/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939181 SAMN22905589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.044 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939182 SAMN22905586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939183 SAMN22901450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351215/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.068 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939184 SAMN22901451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.434 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939185 SAMN22905585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351216/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.616 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.240 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939186 SAMN22906237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351217/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.291 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939187 SAMN22901449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.258 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939188 SAMN22901448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351222/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939189 SAMN22901447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351224/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939190 SAMN22901446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351225/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.712 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939191 SAMN22905584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939192 SAMN22905583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351237/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.132 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.362 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939193 SAMN22905582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.092 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939194 SAMN22906236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939195 SAMN22906235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939196 SAMN22901445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.380 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939197 SAMN22905581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351248/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.267 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939198 SAMN22901444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939199 SAMN22905580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.866 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939200 SAMN22905579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.149 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939201 SAMN22905578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.280 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939202 SAMN22901832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.606 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939203 SAMN22905577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351257/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.929 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939204 SAMN22901059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.483 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939205 SAMN22901831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352000/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.866 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939206 SAMN22901830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.545 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939207 SAMN22901829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939208 SAMN22906056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352004/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.17 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939209 SAMN22901827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939210 SAMN22901828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.068 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939211 SAMN22901825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.311 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939212 SAMN22901826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.888 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939213 SAMN22901058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939214 SAMN22907341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352024/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.515 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939215 SAMN22907340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.460 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939216 SAMN22905486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0352030/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939217 SAMN22905487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0352029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.050 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939218 SAMN22905485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0352031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.783 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939219 SAMN22907339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939220 SAMN22907338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.728 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939221 SAMN22905484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0352033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.121 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939222 SAMN22907469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0352036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.441 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939223 SAMN22901057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352038/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939224 SAMN22901824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.626 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939225 SAMN22901823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.649 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939226 SAMN22901822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352041/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.946 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939227 SAMN22908302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939228 SAMN22908301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.267 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939229 SAMN22905483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0352047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939230 SAMN22902067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.202 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939231 SAMN22904806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352056/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.430 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939232 SAMN22901820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352057/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.671 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.251 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939233 SAMN22901821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939234 SAMN22904443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.090 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939235 SAMN22906045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.706 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939236 SAMN22901798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.807 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939237 SAMN22901797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352446/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.725 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.884 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939238 SAMN22901796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.991 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939239 SAMN22904424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.636 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939240 SAMN22901795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352449/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939241 SAMN22904423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.684 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939242 SAMN22907393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0352455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.203 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939243 SAMN22906044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352457/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.629 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939244 SAMN22906043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.686 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939245 SAMN22906042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.772 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939246 SAMN22907800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.462 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939247 SAMN22902825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0352462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939248 SAMN22907799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939249 SAMN22904780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939250 SAMN22906607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC0352463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939251 SAMN22904779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.081 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939252 SAMN22901049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.460 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939253 SAMN22908274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352473/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.539 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939254 SAMN22901048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.350 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939255 SAMN22906041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939256 SAMN22901047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939257 SAMN22902049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.387 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939258 SAMN22908273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939259 SAMN22906040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939260 SAMN22907329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.530 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939261 SAMN22903881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939262 SAMN22906039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939263 SAMN22903880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.937 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939264 SAMN22903879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349504/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939265 SAMN22903878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.124 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939266 SAMN22903877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.888 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939267 SAMN22900798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.505 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.933 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939268 SAMN22903876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.381 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939269 SAMN22900797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939270 SAMN22900796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.667 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939271 SAMN22903010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349520/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.612 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939272 SAMN22901847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.870 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939273 SAMN22901846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.035 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939274 SAMN22901845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.956 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939275 SAMN22901090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.274 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939276 SAMN22901089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.716 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939277 SAMN22901088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.005 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939278 SAMN22904821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939279 SAMN22904822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939280 SAMN22904820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.144 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939281 SAMN22904819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.592 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939282 SAMN22902943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.097 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939283 SAMN22901844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.597 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939284 SAMN22902942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939285 SAMN22906856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350182/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939286 SAMN22906321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350181/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.866 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939287 SAMN22906320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.429 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939288 SAMN22905691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350184/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939289 SAMN22906319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350185/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939290 SAMN22901506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350186/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.257 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939291 SAMN22905690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.950 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939292 SAMN22901505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350188/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.809 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.606 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939293 SAMN22905689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939294 SAMN22905688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939295 SAMN22905687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350194/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939296 SAMN22901504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350190/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939297 SAMN22901503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350195/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939298 SAMN22901502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.388 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939299 SAMN22905686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350199/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.06 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.234 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939300 SAMN22905685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350200/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.685 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939301 SAMN22905684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350201/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.368 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.523 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939302 SAMN22905683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.834 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939303 SAMN22901501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350206/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.698 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939304 SAMN22905682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939305 SAMN22905681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.849 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939306 SAMN22905680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350215/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.017 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939307 SAMN22905679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.019 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939308 SAMN22901500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.576 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939309 SAMN22906318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350220/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.892 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939310 SAMN22901499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350222/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.080 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939311 SAMN22901498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.774 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939312 SAMN22905678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350226/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.152 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.536 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939313 SAMN22906317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350234/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939314 SAMN22906316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350236/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939315 SAMN22906961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939316 SAMN22906960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.427 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939317 SAMN22906959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939318 SAMN22901012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353374/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939319 SAMN22906958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939320 SAMN22906957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.035 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.656 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939321 SAMN22901011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.120 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939322 SAMN22901010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353378/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939323 SAMN22901009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353379/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939324 SAMN22904737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.125 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939325 SAMN22908211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353391/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939326 SAMN22901768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353399/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.767 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939327 SAMN22904736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353395/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939328 SAMN22904735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.811 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939329 SAMN22901767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353400/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.584 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939330 SAMN22904358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.740 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939331 SAMN22906956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939332 SAMN22901008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353406/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939333 SAMN22901766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.666 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939334 SAMN22901007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939335 SAMN22906954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939336 SAMN22906955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.984 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939337 SAMN22901006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939338 SAMN22906953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939339 SAMN22901005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.903 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939340 SAMN22901765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353417/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.166 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.470 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939341 SAMN22901764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353418/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.514 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939342 SAMN22901763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.42 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939343 SAMN22901762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.599 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939344 SAMN22904357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353424/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.266 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939345 SAMN22901761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.685 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939346 SAMN22904356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353425/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.595 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.675 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939347 SAMN22906143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0343916/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.986 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939348 SAMN22906375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939349 SAMN22906374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343918/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.116 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939350 SAMN22906373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.406 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.517 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939351 SAMN22907643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343920/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939352 SAMN22903106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343921/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.247 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939353 SAMN22901535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.285 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939354 SAMN22901536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939355 SAMN22906372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939356 SAMN22906371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343925/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.836 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939357 SAMN22905719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343928/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939358 SAMN22907642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343929/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939359 SAMN22901534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.489 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939360 SAMN22905718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.236 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939361 SAMN22901533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939362 SAMN22901532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343934/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.342 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939363 SAMN22901531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.769 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939364 SAMN22905717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343937/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.177 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.018 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939365 SAMN22904021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343940/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.543 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.673 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939366 SAMN22905716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.610 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939367 SAMN22901530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.570 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939368 SAMN22901528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.452 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.766 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939369 SAMN22901527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.457 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939370 SAMN22901529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.077 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939371 SAMN22905715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.298 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939372 SAMN22905714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.670 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939373 SAMN22905713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.630 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939374 SAMN22905712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.480 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939375 SAMN22906370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.228 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939376 SAMN22905711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.051 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939377 SAMN22901526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.400 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939378 SAMN22906369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.343 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939379 SAMN22901429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.010 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939380 SAMN22906591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0344030/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939381 SAMN22904171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939382 SAMN22904172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.020 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939383 SAMN22904170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.187 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939384 SAMN22903096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344042/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939385 SAMN22903097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344041/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.857 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.533 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939386 SAMN22903095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.490 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939387 SAMN22903094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939388 SAMN22903093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939389 SAMN22903092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.899 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939390 SAMN22904169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.229 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939391 SAMN22904168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.358 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.201 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939393 SAMN22903091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939394 SAMN22904166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939395 SAMN22903088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939396 SAMN22903090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344052/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.543 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939397 SAMN22904165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344065/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939398 SAMN22903089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.005 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939399 SAMN22905227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939400 SAMN22903087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939401 SAMN22905226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.092 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939402 SAMN22904164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.213 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939403 SAMN22904161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.154 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939404 SAMN22904162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939405 SAMN22904163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939406 SAMN22905225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.224 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.679 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939407 SAMN22907742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939408 SAMN22905224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.954 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.034 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939409 SAMN22905223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.668 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939410 SAMN22907741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344093/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.474 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939411 SAMN22907172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.874 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.672 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939412 SAMN22906005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939392 SAMN22904167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344049/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.715 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.460 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939413 SAMN22907170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345405/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939414 SAMN22907169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345406/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.735 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939415 SAMN22906006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345400/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.254 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939416 SAMN22907168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939417 SAMN22907167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.830 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939418 SAMN22907166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.502 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939419 SAMN22907171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.17 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.564 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939420 SAMN22906004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345414/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.523 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939421 SAMN22902837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0345412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939422 SAMN22907165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939423 SAMN22901213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939424 SAMN22906846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.802 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939425 SAMN22907164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.190 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939426 SAMN22907162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.792 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939427 SAMN22901212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345422/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.960 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939428 SAMN22907163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.863 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939429 SAMN22908628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939430 SAMN22905066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.022 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939431 SAMN22901985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.988 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939432 SAMN22901984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.833 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.905 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939433 SAMN22908627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.54 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.400 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939434 SAMN22901983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.518 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939435 SAMN22901986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345424/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.220 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939436 SAMN22908626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939437 SAMN22908625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.914 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939438 SAMN22904679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345446/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.221 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939439 SAMN22904678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.027 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939440 SAMN22908624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345449/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.670 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939441 SAMN22901982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.771 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939442 SAMN22901981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.360 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939443 SAMN22908588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939444 SAMN22908587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.730 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939445 SAMN22905017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345798/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.641 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939446 SAMN22905016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345799/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939447 SAMN22905015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.745 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.464 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939448 SAMN22905014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.874 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.732 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939449 SAMN22905013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345803/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.960 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939450 SAMN22905012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345805/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939451 SAMN22905011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345806/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.992 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939452 SAMN22905010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345807/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939453 SAMN22905009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939454 SAMN22905008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.822 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939455 SAMN22905007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939456 SAMN22905006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.620 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939457 SAMN22905005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.930 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939458 SAMN22905004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345813/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.633 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939459 SAMN22905003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.694 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939460 SAMN22905002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.784 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.857 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939461 SAMN22905001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.739 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939462 SAMN22908586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.877 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939463 SAMN22906843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345819/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.743 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939464 SAMN22907905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.347 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939465 SAMN22907904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345821/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.162 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939466 SAMN22908585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345822/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.561 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939467 SAMN22902194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345826/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.907 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939468 SAMN22907903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.430 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939469 SAMN22907902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.753 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939470 SAMN22907901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.952 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939471 SAMN22906842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345833/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.240 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939472 SAMN22908714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345834/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.306 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.899 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939473 SAMN22902193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.960 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939474 SAMN22901386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.588 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939475 SAMN22908584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939476 SAMN22901385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.201 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939477 SAMN22901384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345966/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939478 SAMN22901383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345967/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.84 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.296 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939479 SAMN22901382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345968/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.736 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939480 SAMN22901381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345970/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.905 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939481 SAMN22907259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345971/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.516 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939482 SAMN22905870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345972/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.766 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939483 SAMN22905869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345973/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.689 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939484 SAMN22905868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345974/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.54 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.666 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939485 SAMN22901189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.406 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939486 SAMN22907138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345975/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.380 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939487 SAMN22901188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345977/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.84 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939488 SAMN22901187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345978/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.654 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939489 SAMN22905867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345979/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939490 SAMN22905866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345980/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939491 SAMN22905865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.115 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939492 SAMN22905864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345982/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.591 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939493 SAMN22905863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939494 SAMN22901380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939495 SAMN22901379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.532 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939496 SAMN22901378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.846 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939497 SAMN22903328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939498 SAMN22901377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.819 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939499 SAMN22903327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.925 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.949 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939500 SAMN22901376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345990/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.763 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939501 SAMN22901375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.130 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939502 SAMN22901374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345992/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.626 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939503 SAMN22901373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.136 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939504 SAMN22903325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.770 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939505 SAMN22903326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939506 SAMN22901372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.416 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939507 SAMN22904996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939508 SAMN22907397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0346127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.798 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.775 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939509 SAMN22907396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0346128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939510 SAMN22907245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346129/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.384 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939511 SAMN22907394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0346131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.840 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939512 SAMN22907395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0346130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939513 SAMN22905118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0346133/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.161 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939514 SAMN22905995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.050 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939515 SAMN22907127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939516 SAMN22904995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939517 SAMN22907381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0346153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939518 SAMN22905546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0346155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.272 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939519 SAMN22905545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0346156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939520 SAMN22905544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0346157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.736 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939521 SAMN22907380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0346159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.381 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939522 SAMN22906124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.051 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939523 SAMN22904642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346165/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.605 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939524 SAMN22904641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346166/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939525 SAMN22902187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.112 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939526 SAMN22907891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346170/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.626 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939527 SAMN22901181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346172/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.464 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939528 SAMN22906123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.628 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939529 SAMN22907126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939530 SAMN22904640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346175/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.324 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.089 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939531 SAMN22906122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.551 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939532 SAMN22904994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939533 SAMN22902186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346178/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.139 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939534 SAMN22904638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346181/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.576 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939535 SAMN22904639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.056 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939536 SAMN22904637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346182/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.157 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939537 SAMN22904636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.576 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939538 SAMN22904635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346185/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939539 SAMN22900876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939540 SAMN22900877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939541 SAMN22900875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.587 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939542 SAMN22900874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.028 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939543 SAMN22900873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.929 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939544 SAMN22900872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346653/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939545 SAMN22903967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939546 SAMN22907244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.126 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939547 SAMN22903293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346664/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.024 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939548 SAMN22903292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.723 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939549 SAMN22903291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.694 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.268 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939550 SAMN22901333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.098 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939551 SAMN22901177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939552 SAMN22901176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.628 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939553 SAMN22906913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346673/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.719 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939554 SAMN22906912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.100 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939555 SAMN22906911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.171 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939556 SAMN22901332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346677/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.746 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939557 SAMN22901331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.027 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939558 SAMN22901330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.809 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939559 SAMN22901329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.144 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939560 SAMN22908166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346682/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.700 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939561 SAMN22908163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.452 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939562 SAMN22908165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.909 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939563 SAMN22908162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346689/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939564 SAMN22908164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346685/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.489 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.777 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939565 SAMN22908161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346690/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939566 SAMN22908160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346691/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939567 SAMN22908159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346692/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.843 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939568 SAMN22908158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.06 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939569 SAMN22908157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.636 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939570 SAMN22906617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.383 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939571 SAMN22908156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.063 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939572 SAMN22903788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939573 SAMN22903772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939574 SAMN22902985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939575 SAMN22907407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.412 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939576 SAMN22907406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.577 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939577 SAMN22907404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.139 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939578 SAMN22907405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.615 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939579 SAMN22906850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350590/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.246 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939580 SAMN22906616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350591/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.802 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939581 SAMN22906615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.331 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939582 SAMN22906614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350593/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.303 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.333 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939583 SAMN22906849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350594/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939584 SAMN22907483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350599/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.899 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939585 SAMN22900744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.129 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939586 SAMN22907482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.083 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939587 SAMN22900743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.042 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939588 SAMN22907481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.254 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.101 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939589 SAMN22907480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.378 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939590 SAMN22907479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.603 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939591 SAMN22906613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.683 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939592 SAMN22907403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350605/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.345 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939593 SAMN22907692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.354 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939594 SAMN22907691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.123 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939595 SAMN22907690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939596 SAMN22907689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.304 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939597 SAMN22907560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.894 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939598 SAMN22908741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0349579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939599 SAMN22903235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349585/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939600 SAMN22903234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939601 SAMN22900794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939602 SAMN22900795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.760 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939603 SAMN22900793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.423 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939604 SAMN22900792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349590/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939605 SAMN22906866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349593/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939606 SAMN22903875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349594/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939607 SAMN22903874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939608 SAMN22903873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939609 SAMN22903872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.896 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939610 SAMN22906157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349599/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939611 SAMN22906659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.144 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.546 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939612 SAMN22903871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.407 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939613 SAMN22906156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.987 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939614 SAMN22904219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.303 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939615 SAMN22904218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.56 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.230 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939616 SAMN22907758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939617 SAMN22903126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.799 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939618 SAMN22907757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939619 SAMN22904217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343529/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.239 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.323 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939620 SAMN22907608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.450 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939621 SAMN22907756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.928 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939622 SAMN22904216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.066 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939623 SAMN22904215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.145 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939624 SAMN22903125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939625 SAMN22905274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.327 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939626 SAMN22906436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.888 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.194 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939627 SAMN22907198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0343538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939628 SAMN22907755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.485 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939629 SAMN22907607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939630 SAMN22907606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.710 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939631 SAMN22903124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.852 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939632 SAMN22905273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.368 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939633 SAMN22907605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343545/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939634 SAMN22905272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343547/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.541 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939635 SAMN22903123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939636 SAMN22907604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939637 SAMN22907753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.763 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939638 SAMN22907603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939639 SAMN22907752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939640 SAMN22907754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.451 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939641 SAMN22903122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939642 SAMN22903121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343557/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939643 SAMN22905271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.925 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939644 SAMN22907751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939645 SAMN22907750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.716 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939646 SAMN22902233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344891/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939647 SAMN22907185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.549 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939648 SAMN22907186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.342 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939649 SAMN22902232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939650 SAMN22907922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0344897/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939651 SAMN22902231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344900/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939652 SAMN22902230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.733 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939653 SAMN22904706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344903/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939654 SAMN22904705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344904/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.277 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939655 SAMN22904704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344905/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.319 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939656 SAMN22902229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344908/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939657 SAMN22906930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344909/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.916 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939658 SAMN22906929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344910/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939659 SAMN22906928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344911/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939660 SAMN22901423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939661 SAMN22907184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.93 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.642 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939662 SAMN22901422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344918/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.610 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939663 SAMN22908773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0344921/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.132 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939664 SAMN22901421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939665 SAMN22901224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.784 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.359 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939666 SAMN22903347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0344922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939667 SAMN22901223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344925/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.775 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939668 SAMN22901220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.871 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939669 SAMN22901222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344926/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.890 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939670 SAMN22901221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344927/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.086 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939671 SAMN22903346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0344932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.760 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939672 SAMN22901420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.621 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939673 SAMN22901419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344934/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.574 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939674 SAMN22901418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344935/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.344 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939675 SAMN22907308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0344936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939676 SAMN22907307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0344937/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939677 SAMN22908517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.804 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939678 SAMN22901417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.981 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939679 SAMN22908516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.831 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939680 SAMN22907874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939681 SAMN22907873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347001/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.390 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939682 SAMN22904604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.925 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939683 SAMN22908515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.871 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939684 SAMN22904603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.531 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.092 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939685 SAMN22908514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.796 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939686 SAMN22906832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939687 SAMN22908513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.069 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939688 SAMN22906831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347015/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939689 SAMN22904602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.353 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939690 SAMN22904601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347019/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.872 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939691 SAMN22904600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.303 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.633 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939692 SAMN22904599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939693 SAMN22906830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939694 SAMN22904598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939695 SAMN22906829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347024/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939696 SAMN22907872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939697 SAMN22904597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.490 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939698 SAMN22904596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939699 SAMN22904595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347028/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939700 SAMN22904594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.218 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.690 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939701 SAMN22904593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.139 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939702 SAMN22902162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939703 SAMN22902161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939704 SAMN22902160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.742 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939705 SAMN22904948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347038/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.438 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939706 SAMN22904947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939707 SAMN22904946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.413 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939708 SAMN22904945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347041/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.439 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939709 SAMN22904944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347042/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.410 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939710 SAMN22901924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347177/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.984 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939711 SAMN22904929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939712 SAMN22904928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.250 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939713 SAMN22904927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347181/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.189 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939714 SAMN22904926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347182/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 12.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 10.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939715 SAMN22904588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939716 SAMN22901162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347186/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939717 SAMN22904925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347194/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939718 SAMN22906088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939719 SAMN22907862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939720 SAMN22907863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347185/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939721 SAMN22906087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939722 SAMN22904924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347195/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.709 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939723 SAMN22904923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347198/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939724 SAMN22904922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.345 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939725 SAMN22904920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.368 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939726 SAMN22904919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347213/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939727 SAMN22908496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.077 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939728 SAMN22904921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 12.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 10.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939729 SAMN22908495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347216/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939730 SAMN22901161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347217/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.098 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939731 SAMN22901160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.558 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939732 SAMN22901159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.827 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939733 SAMN22907098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347220/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.138 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939734 SAMN22904587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.220 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939735 SAMN22904918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347226/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939736 SAMN22904917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347227/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939737 SAMN22907861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347229/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.467 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.560 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939738 SAMN22904916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347228/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939739 SAMN22908494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.504 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.951 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939740 SAMN22905502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939741 SAMN22907097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347234/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.252 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939742 SAMN22901158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939743 SAMN22906779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939744 SAMN22906778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939745 SAMN22905930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348806/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939746 SAMN22905929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939747 SAMN22905928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939748 SAMN22905927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939749 SAMN22905926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348813/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939750 SAMN22905925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939751 SAMN22907353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939752 SAMN22905924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939753 SAMN22907352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939754 SAMN22907351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939755 SAMN22907349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348824/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939756 SAMN22907350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939757 SAMN22907348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939758 SAMN22906777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939759 SAMN22907347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939760 SAMN22906776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939761 SAMN22906775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348837/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939762 SAMN22906773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939763 SAMN22906774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939764 SAMN22905923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939765 SAMN22906772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939766 SAMN22906770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348848/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939767 SAMN22906771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939768 SAMN22905922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939769 SAMN22905921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348852/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939770 SAMN22905919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939771 SAMN22905920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939772 SAMN22905918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939773 SAMN22905917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939774 SAMN22907572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.760 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939775 SAMN22907698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939776 SAMN22907571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939777 SAMN22907570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.285 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939778 SAMN22907697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.782 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939779 SAMN22906332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350073/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.131 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939780 SAMN22907569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.794 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939781 SAMN22907696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939782 SAMN22907568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350077/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939783 SAMN22906149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0350076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.595 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.891 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939784 SAMN22907567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939785 SAMN22907565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350080/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.963 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.096 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939786 SAMN22907566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.751 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939787 SAMN22907564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350081/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.135 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939788 SAMN22906609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC0350082/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.019 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939789 SAMN22902827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0350083/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.593 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939790 SAMN22907563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.659 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939791 SAMN22902873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939792 SAMN22901522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.84 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.745 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939793 SAMN22906331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939794 SAMN22901521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.380 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939795 SAMN22902872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350089/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939796 SAMN22901520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.533 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939797 SAMN22901519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939798 SAMN22905707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.120 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939799 SAMN22901518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.522 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939800 SAMN22901517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.214 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939801 SAMN22905706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939802 SAMN22901516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.583 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939803 SAMN22906330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939804 SAMN22901515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350100/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.536 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939805 SAMN22905482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0353019/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939806 SAMN22901514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350101/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.595 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939807 SAMN22907947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939808 SAMN22907946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939809 SAMN22907945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.955 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939810 SAMN22905481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0353024/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.427 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.622 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.990 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939811 SAMN22904756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.874 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939812 SAMN22904755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939813 SAMN22904754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939814 SAMN22906973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353032/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.898 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.885 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939815 SAMN22906974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.57 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.955 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939816 SAMN22901029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.754 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939817 SAMN22901030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.356 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939818 SAMN22906972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.833 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939819 SAMN22906971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353038/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.498 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939820 SAMN22906970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.133 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939821 SAMN22906969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.102 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.118 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939822 SAMN22906030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353041/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.939 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939823 SAMN22902032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353042/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.125 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939824 SAMN22901028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.343 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939825 SAMN22906029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939826 SAMN22906028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.522 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939827 SAMN22907793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939828 SAMN22906027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.007 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939829 SAMN22902031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939830 SAMN22907792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353054/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.730 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939831 SAMN22904381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.062 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939832 SAMN22902030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353057/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.608 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939833 SAMN22904753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939834 SAMN22904382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939835 SAMN22904380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353061/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.504 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939836 SAMN22904378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.833 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939837 SAMN22904379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.706 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939838 SAMN22905416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.172 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.451 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939839 SAMN22905415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.84 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.737 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939840 SAMN22906492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342512/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.457 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939841 SAMN22905414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.442 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939842 SAMN22904340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939843 SAMN22904339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342518/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.042 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939844 SAMN22904338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.603 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939845 SAMN22904337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.768 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939846 SAMN22903196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939847 SAMN22904336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342525/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939848 SAMN22905413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.104 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939849 SAMN22904335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.497 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.017 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939850 SAMN22904334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.315 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939851 SAMN22904333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342529/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.264 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.837 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939852 SAMN22904332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.966 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939853 SAMN22904331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.981 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939854 SAMN22904330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939855 SAMN22904329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.329 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.991 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939856 SAMN22904328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.024 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939857 SAMN22904327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.523 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939858 SAMN22904326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.711 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939859 SAMN22905412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.462 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939860 SAMN22905411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.116 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939861 SAMN22904325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0342542/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.455 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.234 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939862 SAMN22906606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0342540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.878 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939863 SAMN22905410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0342543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.035 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.126 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939864 SAMN22903195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.461 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939865 SAMN22903194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.730 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939866 SAMN22903193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.252 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939867 SAMN22905822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939868 SAMN22905821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342557/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.923 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939869 SAMN22901700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.960 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939870 SAMN22908604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.811 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939871 SAMN22905039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939872 SAMN22905038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.441 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939873 SAMN22908603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.348 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939874 SAMN22908602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939875 SAMN22901972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.337 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939876 SAMN22905037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939877 SAMN22908601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.874 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939878 SAMN22908600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939879 SAMN22908599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939880 SAMN22901971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.281 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939881 SAMN22905036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939882 SAMN22907154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939883 SAMN22905035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345630/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939884 SAMN22907153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.685 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939885 SAMN22907152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939886 SAMN22905999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345636/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939887 SAMN22907384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.851 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939888 SAMN22907382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939889 SAMN22907383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345639/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.143 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939890 SAMN22906845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345641/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939891 SAMN22907914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.950 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939892 SAMN22907913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.166 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.259 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939893 SAMN22906131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.466 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939894 SAMN22908717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345649/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.619 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939895 SAMN22908174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0345647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.146 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939896 SAMN22908598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939897 SAMN22903724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0345651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939898 SAMN22905034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939899 SAMN22905033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.038 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939900 SAMN22901970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345657/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.362 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939901 SAMN22904064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0345659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939902 SAMN22904551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939903 SAMN22904552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.446 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939904 SAMN22904550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.393 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939905 SAMN22904549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347512/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.050 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939906 SAMN22904548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.421 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939907 SAMN22904547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.150 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939908 SAMN22904546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939909 SAMN22907240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0347518/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.185 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939910 SAMN22907241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0347517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939911 SAMN22907239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0347519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.956 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939912 SAMN22908770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0347520/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.657 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939913 SAMN22901303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347521/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.680 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939914 SAMN22908769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0347523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.822 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939915 SAMN22907238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0347522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939916 SAMN22905859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0347524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939917 SAMN22905858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0347525/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.981 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939918 SAMN22905857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0347526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939919 SAMN22901302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.757 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939920 SAMN22901142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.726 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939921 SAMN22905856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0347527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.124 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939922 SAMN22901141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939923 SAMN22901140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939924 SAMN22901139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.858 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939925 SAMN22906908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939926 SAMN22901138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.132 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.200 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939927 SAMN22901301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939928 SAMN22901299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.270 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939929 SAMN22901300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.799 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939930 SAMN22901298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.156 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939931 SAMN22903284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.063 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939932 SAMN22903283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347542/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939933 SAMN22901297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939934 SAMN22905794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.923 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939935 SAMN22905795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.814 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939936 SAMN22901675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342648/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.541 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939937 SAMN22905793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.745 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939938 SAMN22905792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939939 SAMN22905791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342657/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.081 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939940 SAMN22902897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.337 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939941 SAMN22906474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.842 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939942 SAMN22901674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939943 SAMN22905790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342661/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.753 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939944 SAMN22905789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939945 SAMN22905788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.791 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939946 SAMN22902896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939947 SAMN22905787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.307 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939948 SAMN22904049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.894 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939949 SAMN22907664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939950 SAMN22905786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.996 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939951 SAMN22906473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.408 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939952 SAMN22905785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.353 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939953 SAMN22906472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.305 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939954 SAMN22905784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.861 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939955 SAMN22907765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343200/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939956 SAMN22903173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343198/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939957 SAMN22907764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.411 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939958 SAMN22904309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.325 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939959 SAMN22907763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343205/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939960 SAMN22907609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939961 SAMN22907762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343206/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.711 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.862 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939962 SAMN22907761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.238 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939963 SAMN22901621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343209/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939964 SAMN22901620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.853 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939965 SAMN22907760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343208/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.832 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.108 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939966 SAMN22901619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.374 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939967 SAMN22906450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343213/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.265 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939968 SAMN22907660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.052 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939969 SAMN22902890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939970 SAMN22901618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343215/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.656 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939971 SAMN22901617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343216/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.602 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939972 SAMN22901616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343217/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.394 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939973 SAMN22901615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.009 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939974 SAMN22901614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.910 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939975 SAMN22904308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343220/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.099 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939976 SAMN22904022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.208 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939977 SAMN22906449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343222/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939978 SAMN22906448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939979 SAMN22902889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343224/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.714 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939980 SAMN22903172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343226/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939981 SAMN22904307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343227/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.728 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939982 SAMN22904306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343229/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.681 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939983 SAMN22905396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343230/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.820 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939984 SAMN22903171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.187 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939985 SAMN22904305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343233/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939986 SAMN22905395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343232/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.553 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939987 SAMN22905215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344134/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.846 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939988 SAMN22907725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.423 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.731 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939989 SAMN22907724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.595 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939990 SAMN22907723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.096 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939991 SAMN22907722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939992 SAMN22907589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0344138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939993 SAMN22905214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344141/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.803 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939994 SAMN22907721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344142/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939995 SAMN22907588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0344143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.406 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939996 SAMN22903082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939997 SAMN22903081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344145/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.482 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.897 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939998 SAMN22907587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0344147/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.930 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10939999 SAMN22907586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0344148/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.307 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940000 SAMN22907720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344150/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940001 SAMN22907718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.979 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940002 SAMN22907719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940003 SAMN22907717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344154/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.542 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.270 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940004 SAMN22904156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940005 SAMN22907716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.013 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940006 SAMN22904155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344158/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940007 SAMN22904154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940008 SAMN22907585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0344160/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940009 SAMN22905213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.147 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940010 SAMN22906225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC0344161/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940011 SAMN22904153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940012 SAMN22903080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.724 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940013 SAMN22904152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344164/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.725 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.374 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940014 SAMN22904151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344165/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940015 SAMN22904150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344166/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.907 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940016 SAMN22907715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344167/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.224 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.281 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940017 SAMN22904149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344171/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940018 SAMN22904148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.140 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940019 SAMN22906000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940020 SAMN22907155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.384 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940021 SAMN22905050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.480 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940022 SAMN22908617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.892 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940023 SAMN22908616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.184 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.873 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940024 SAMN22902199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.919 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940025 SAMN22905048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940026 SAMN22905049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.684 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940027 SAMN22905047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.442 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940028 SAMN22905045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.883 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940029 SAMN22905046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.839 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940030 SAMN22905044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940031 SAMN22905043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345585/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940032 SAMN22905042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.32 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.509 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940033 SAMN22908615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.916 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940034 SAMN22908614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.620 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940035 SAMN22908613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.312 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940036 SAMN22905041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345591/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.827 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940037 SAMN22908612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940038 SAMN22908611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345593/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.304 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940039 SAMN22908610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345594/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940040 SAMN22908609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.951 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940041 SAMN22908608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345597/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.683 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940042 SAMN22901974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.434 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.921 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940043 SAMN22904673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.964 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940044 SAMN22904674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.926 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.856 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940045 SAMN22908607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.473 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940046 SAMN22904672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940047 SAMN22901973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940048 SAMN22908606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.660 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940049 SAMN22905040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940050 SAMN22908605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.199 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940051 SAMN22907890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346188/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.270 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940052 SAMN22900736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0346189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940053 SAMN22902835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0346191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.797 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940054 SAMN22907889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346190/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.550 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940055 SAMN22907888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346192/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.452 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.643 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940056 SAMN22902184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346194/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.893 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940057 SAMN22902185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.257 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940058 SAMN22902183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346195/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940059 SAMN22906121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940060 SAMN22902834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0346197/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940061 SAMN22907379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0346199/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.987 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940062 SAMN22903308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.543 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940063 SAMN22903307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940064 SAMN22901340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.643 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940065 SAMN22903306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.925 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.392 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940066 SAMN22903305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346208/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.466 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940067 SAMN22903304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346209/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.008 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940068 SAMN22901339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.461 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940069 SAMN22903303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940070 SAMN22903302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346213/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.478 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940071 SAMN22901338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346216/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940072 SAMN22901337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346217/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.804 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940073 SAMN22903301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.645 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940074 SAMN22903300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346220/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.023 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940075 SAMN22901336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940076 SAMN22903299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.513 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940077 SAMN22901335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346225/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940078 SAMN22901334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346226/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.909 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940079 SAMN22903298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346227/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940080 SAMN22907125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346229/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.594 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940081 SAMN22907124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346230/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.256 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940082 SAMN22907123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346232/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940083 SAMN22901916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.494 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940084 SAMN22908481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347324/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940085 SAMN22908480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347325/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.703 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940086 SAMN22901915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347331/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940087 SAMN22908479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347326/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.186 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940088 SAMN22901154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940089 SAMN22901153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347333/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.411 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940090 SAMN22901152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.489 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940091 SAMN22906086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.913 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940092 SAMN22907859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.567 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940093 SAMN22904905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940094 SAMN22904904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347340/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.771 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940095 SAMN22906085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347342/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.731 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940097 SAMN22906084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347343/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.910 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940098 SAMN22908478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347345/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.148 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940099 SAMN22908477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.831 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940100 SAMN22908476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.92 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.817 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940101 SAMN22908475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347348/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 100 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.385 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940102 SAMN22908474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347349/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.992 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940103 SAMN22908473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.346 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940104 SAMN22908472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.734 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940105 SAMN22904903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.716 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940106 SAMN22901914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.623 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940107 SAMN22904902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347357/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940108 SAMN22904901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.282 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940109 SAMN22904580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.319 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940110 SAMN22904900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.351 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.952 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940111 SAMN22904899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940112 SAMN22904898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.215 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940113 SAMN22904897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.163 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940114 SAMN22906906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940096 SAMN22907858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347341/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.651 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940115 SAMN22904896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347367/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940116 SAMN22900868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.340 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940117 SAMN22906905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347638/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.351 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.002 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940118 SAMN22900869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.015 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940119 SAMN22906904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347639/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940120 SAMN22900867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.391 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940121 SAMN22903282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940122 SAMN22906191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.881 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940123 SAMN22907518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0347651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 94 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940124 SAMN22906693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.670 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940125 SAMN22903961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347653/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.303 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940126 SAMN22906692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940127 SAMN22903960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940128 SAMN22903959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.737 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940129 SAMN22903958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.755 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940130 SAMN22906903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940131 SAMN22906902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.297 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940132 SAMN22906690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.015 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940133 SAMN22906691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.343 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940134 SAMN22903030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347673/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940135 SAMN22903029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.750 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940136 SAMN22900866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.110 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940137 SAMN22906689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347681/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.682 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940138 SAMN22903957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347683/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940139 SAMN22903956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940140 SAMN22906190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940141 SAMN22903954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347692/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940142 SAMN22903955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347689/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.2 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.381 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940143 SAMN22900865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.853 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940144 SAMN22900864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.933 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940145 SAMN22900863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 95 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.83 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.332 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940146 SAMN22903953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940147 SAMN22906672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347927/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940148 SAMN22903921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347928/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.505 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.278 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940149 SAMN22906336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0347930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.846 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940150 SAMN22900825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940151 SAMN22900824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.434 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940152 SAMN22900823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347933/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.259 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940153 SAMN22903920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.505 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940154 SAMN22906175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347940/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940155 SAMN22906671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.260 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940156 SAMN22903919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.522 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940157 SAMN22903918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.119 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940158 SAMN22903917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940159 SAMN22906174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.737 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940160 SAMN22906173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.104 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940161 SAMN22906172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.029 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940162 SAMN22900822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.730 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940163 SAMN22906670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.949 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940164 SAMN22903916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.406 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940165 SAMN22900821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.963 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.25 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.152 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940166 SAMN22906171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.195 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940167 SAMN22903915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347970/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.796 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940168 SAMN22903914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347971/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.821 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940169 SAMN22900820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347978/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.031 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940170 SAMN22900819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347980/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.924 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940171 SAMN22906335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0347981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940172 SAMN22906170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940173 SAMN22900818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940174 SAMN22906669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.642 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940175 SAMN22900817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.655 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940176 SAMN22903913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.682 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940177 SAMN22906169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940178 SAMN22907555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.657 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940179 SAMN22907554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940180 SAMN22907688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.309 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940181 SAMN22903912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.293 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940182 SAMN22902983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940183 SAMN22902982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.829 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940184 SAMN22907553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940185 SAMN22907552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940186 SAMN22906257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940187 SAMN22902981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350625/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.522 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940188 SAMN22907686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.633 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940189 SAMN22907687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.493 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940190 SAMN22902941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.530 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940191 SAMN22902980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.270 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940192 SAMN22907685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350630/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940193 SAMN22907682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.324 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.759 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940194 SAMN22907683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.730 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940195 SAMN22907681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.444 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940196 SAMN22907684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350631/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.014 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940197 SAMN22907680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.385 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940198 SAMN22907551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350636/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.500 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940199 SAMN22907678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940200 SAMN22907679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350639/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940201 SAMN22907677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350641/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940202 SAMN22902979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.818 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940203 SAMN22902977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940204 SAMN22902978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350638/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.644 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940205 SAMN22907676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940206 SAMN22907674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.909 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940207 SAMN22907672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350648/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940208 SAMN22907673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940209 SAMN22907675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.439 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.750 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940210 SAMN22907550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0350649/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.419 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940211 SAMN22902918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350791/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940212 SAMN22902917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350792/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940213 SAMN22906551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350799/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.238 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940214 SAMN22905445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.026 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940215 SAMN22906550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.900 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940216 SAMN22906548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940217 SAMN22906549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940218 SAMN22906547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350803/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940219 SAMN22906546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940220 SAMN22906545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350806/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.603 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940221 SAMN22902915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350807/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.740 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940222 SAMN22902914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940223 SAMN22905444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940224 SAMN22902916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350805/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.451 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940225 SAMN22905442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940226 SAMN22905443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.379 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940227 SAMN22906544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.749 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940228 SAMN22906543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940229 SAMN22902913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940230 SAMN22902912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940231 SAMN22902910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350821/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940232 SAMN22902911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350819/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940233 SAMN22905441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940234 SAMN22905440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350822/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.148 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940235 SAMN22906542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.114 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940236 SAMN22905439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350824/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.970 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940237 SAMN22906541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940238 SAMN22906540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940239 SAMN22906539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350828/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940240 SAMN22906538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.741 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940241 SAMN22907811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.681 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940242 SAMN22908704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0351721/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.177 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940243 SAMN22902071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940244 SAMN22901082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940245 SAMN22901081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351728/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.504 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940246 SAMN22904818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940247 SAMN22901080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940248 SAMN22907016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.430 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940249 SAMN22905437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940250 SAMN22901079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351737/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940251 SAMN22905438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.010 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940252 SAMN22907810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.364 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940253 SAMN22906147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0351741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.581 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940254 SAMN22901078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940255 SAMN22907015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.956 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940256 SAMN22901077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351748/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940257 SAMN22907014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.474 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940258 SAMN22904446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351750/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.248 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940259 SAMN22907013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.664 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940260 SAMN22905902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351752/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940261 SAMN22907010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940262 SAMN22907011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.423 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.679 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940263 SAMN22907009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.988 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940264 SAMN22907012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351753/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940265 SAMN22901076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.741 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940266 SAMN22907008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.595 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.339 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940267 SAMN22901075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351777/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.767 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940268 SAMN22902070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351778/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.851 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940269 SAMN22908566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346337/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.192 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940270 SAMN22902175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346342/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.169 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940271 SAMN22902174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346343/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.746 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940272 SAMN22904817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351767/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.409 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.663 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940273 SAMN22902173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346344/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940274 SAMN22901890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.906 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.435 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940275 SAMN22904855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348349/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.410 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940276 SAMN22901889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940277 SAMN22907072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940278 SAMN22901127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348353/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940279 SAMN22901128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940280 SAMN22908565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346338/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.864 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940281 SAMN22904854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.773 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940282 SAMN22904499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.319 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940283 SAMN22904498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.806 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940284 SAMN22904853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348360/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.386 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940285 SAMN22904852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940286 SAMN22904851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.734 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940287 SAMN22904850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940288 SAMN22904849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.002 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940289 SAMN22901888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 19.903 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940290 SAMN22904497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.129 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940291 SAMN22904496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.663 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940292 SAMN22904848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.037 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940293 SAMN22901886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940294 SAMN22901887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348367/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940295 SAMN22901885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.289 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940296 SAMN22904495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348374/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.832 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940297 SAMN22904845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348381/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.481 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940298 SAMN22904844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348382/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.578 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.661 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940299 SAMN22901126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940300 SAMN22907850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0348384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.134 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940301 SAMN22904847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.650 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940302 SAMN22901125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348387/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.697 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940303 SAMN22901123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348389/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940304 SAMN22901124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348388/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.212 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940305 SAMN22905985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.754 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.263 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.567 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940306 SAMN22906658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.001 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940307 SAMN22904846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940308 SAMN22903869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940309 SAMN22900791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.759 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940310 SAMN22906155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.032 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940311 SAMN22906154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.685 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940312 SAMN22900790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.585 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940313 SAMN22903868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.218 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940314 SAMN22903870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940315 SAMN22903867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940316 SAMN22903866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.893 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940317 SAMN22906153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940318 SAMN22906152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.931 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940319 SAMN22906656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.140 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940320 SAMN22900789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.894 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940321 SAMN22906657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940322 SAMN22900787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349638/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.989 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940323 SAMN22900788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.165 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940324 SAMN22906865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.977 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940325 SAMN22903865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940326 SAMN22903864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.434 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940327 SAMN22906151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.795 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940328 SAMN22903862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940329 SAMN22906655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.050 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940330 SAMN22906654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940331 SAMN22900786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940332 SAMN22900785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349653/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.790 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940333 SAMN22906653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.714 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940334 SAMN22901281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349658/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.046 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940335 SAMN22905845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940336 SAMN22901087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349661/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.302 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940337 SAMN22903863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940338 SAMN22903211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940339 SAMN22903009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940340 SAMN22901252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940341 SAMN22903210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349826/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.563 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940342 SAMN22903208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.757 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940343 SAMN22903207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.184 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.064 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940344 SAMN22901251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349834/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940345 SAMN22903209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940346 SAMN22901250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940347 SAMN22903206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940348 SAMN22901249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940349 SAMN22901248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.571 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940350 SAMN22903205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349837/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940351 SAMN22901247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.283 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940352 SAMN22907020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.267 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940353 SAMN22903204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349845/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.260 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940354 SAMN22901245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.770 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940355 SAMN22901246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.883 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940356 SAMN22906860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940357 SAMN22903859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940358 SAMN22906859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.606 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940359 SAMN22906858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349848/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.971 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940360 SAMN22903860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940361 SAMN22903858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349852/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.750 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940362 SAMN22903857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349853/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.252 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940363 SAMN22903856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.283 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940364 SAMN22905844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940365 SAMN22905843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.951 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940366 SAMN22901244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.814 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940367 SAMN22901243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940368 SAMN22901242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349867/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.713 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940369 SAMN22901513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350104/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.277 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940370 SAMN22905705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940371 SAMN22902871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940372 SAMN22901512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940373 SAMN22907428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350108/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940374 SAMN22905704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940375 SAMN22900782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.754 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940376 SAMN22901086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349863/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.949 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940377 SAMN22904063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350112/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940378 SAMN22905703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.508 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940379 SAMN22905702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.090 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940380 SAMN22905701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350113/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940381 SAMN22901511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350114/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.771 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940382 SAMN22901510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.470 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940383 SAMN22901509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350117/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940384 SAMN22905700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.645 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.253 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940385 SAMN22901508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940386 SAMN22906329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.452 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940387 SAMN22906328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.754 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940388 SAMN22901507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.829 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940389 SAMN22905699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350123/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.965 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940390 SAMN22905698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350124/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.694 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940391 SAMN22905695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.363 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940392 SAMN22905697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350125/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940393 SAMN22905696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.778 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940394 SAMN22905694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940395 SAMN22905693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350133/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940396 SAMN22905692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.726 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940397 SAMN22906326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350132/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940398 SAMN22906327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.240 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940399 SAMN22906645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.994 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940400 SAMN22906644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940401 SAMN22907427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.326 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940402 SAMN22900775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350141/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940403 SAMN22902254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.138 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940404 SAMN22908732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.329 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940405 SAMN22907419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.024 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940406 SAMN22906624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350414/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.224 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940407 SAMN22907488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940408 SAMN22903834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940409 SAMN22903832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940410 SAMN22903833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350417/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940411 SAMN22903831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940412 SAMN22905883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0350410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.609 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940413 SAMN22903835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.976 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940414 SAMN22903830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940415 SAMN22903829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350422/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.091 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940416 SAMN22906284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350426/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940417 SAMN22906283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.364 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940418 SAMN22903828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940419 SAMN22906282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350429/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.254 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940420 SAMN22902862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940421 SAMN22906281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.507 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940422 SAMN22906280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940423 SAMN22906279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350440/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.443 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940424 SAMN22907630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350438/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.098 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940425 SAMN22902863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350430/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940426 SAMN22906277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350442/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940427 SAMN22906278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.020 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940428 SAMN22906276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.499 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940429 SAMN22902085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0350443/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940430 SAMN22906275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.008 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.798 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940431 SAMN22906274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.951 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940432 SAMN22902861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.914 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940433 SAMN22907418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.628 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940434 SAMN22902860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940435 SAMN22908197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.001 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.391 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940436 SAMN22908196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.041 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940437 SAMN22901710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.275 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940438 SAMN22901709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353638/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.428 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940439 SAMN22901708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940440 SAMN22902002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353657/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940441 SAMN22908198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940442 SAMN22902001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353658/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.309 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940443 SAMN22900992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.243 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940444 SAMN22900991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940445 SAMN22904720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940446 SAMN22904719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353664/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.462 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.616 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940447 SAMN22908195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940448 SAMN22907784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.647 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.044 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940449 SAMN22900990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.068 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940450 SAMN22904718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.135 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940451 SAMN22906015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353670/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.174 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940452 SAMN22907783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940453 SAMN22906014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940454 SAMN22905837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0353678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.548 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940455 SAMN22904345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.920 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940456 SAMN22906013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.309 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940457 SAMN22904344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.263 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940458 SAMN22904717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.147 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940459 SAMN22908194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.652 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940460 SAMN22907925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.723 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940461 SAMN22908193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940462 SAMN22903359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0353699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.034 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940463 SAMN22907309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.379 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.044 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940464 SAMN22907310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.866 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.263 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940465 SAMN22904343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.664 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940466 SAMN22901568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343832/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940467 SAMN22906386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343833/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940468 SAMN22902876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343834/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940469 SAMN22906385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.591 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940470 SAMN22901567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940471 SAMN22907648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.11 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940472 SAMN22901566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.312 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940473 SAMN22901565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.062 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940474 SAMN22901564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.997 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940475 SAMN22908192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940476 SAMN22903755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0343842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940477 SAMN22901563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.564 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.775 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940478 SAMN22906384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940479 SAMN22906383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940480 SAMN22907647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.000 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940481 SAMN22906382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343848/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940482 SAMN22906381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343849/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.658 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940483 SAMN22906380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940484 SAMN22902875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940485 SAMN22900960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343852/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940486 SAMN22901561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343854/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.677 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940487 SAMN22906379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.374 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.319 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940488 SAMN22901562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343845/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.510 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940489 SAMN22907542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0343857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.261 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940490 SAMN22901559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343858/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.998 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940491 SAMN22905244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940492 SAMN22907646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.266 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940493 SAMN22901558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.668 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940494 SAMN22901557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.428 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940495 SAMN22901556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343863/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940496 SAMN22907645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940497 SAMN22907458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343868/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.140 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940498 SAMN22901554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.447 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940499 SAMN22901553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940500 SAMN22901552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343876/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940501 SAMN22901560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.484 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940502 SAMN22901551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343878/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.931 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940503 SAMN22901555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.950 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940504 SAMN22901550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343880/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940505 SAMN22901549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343881/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.113 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940506 SAMN22901548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940507 SAMN22901546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.511 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940508 SAMN22901545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343885/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.502 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940509 SAMN22901543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940510 SAMN22901542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343890/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.466 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940511 SAMN22901541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343891/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940512 SAMN22901547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.873 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940513 SAMN22901540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343892/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.071 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.566 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940514 SAMN22906378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.139 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940515 SAMN22901539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343899/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.757 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940516 SAMN22901544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343886/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.287 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940517 SAMN22906377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343900/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940518 SAMN22907644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940519 SAMN22900959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343901/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940520 SAMN22905727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343903/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.919 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940521 SAMN22905725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343905/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940522 SAMN22905724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.902 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940523 SAMN22905722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343909/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940524 SAMN22905721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343910/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.723 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940525 SAMN22905726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343904/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940526 SAMN22905720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343911/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.564 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.021 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940527 SAMN22901538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343912/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940528 SAMN22906376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.215 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940529 SAMN22901537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343915/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.298 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940530 SAMN22906833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0346345/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940531 SAMN22906120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.872 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940532 SAMN22908564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346349/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940533 SAMN22908712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0346350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940534 SAMN22904623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.442 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940535 SAMN22904988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.286 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940536 SAMN22905723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343908/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.866 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.684 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940537 SAMN22908562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.798 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940538 SAMN22908561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.605 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940539 SAMN22904622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.416 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940540 SAMN22901958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.684 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.954 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940541 SAMN22904621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346360/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940542 SAMN22904620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.714 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940543 SAMN22904987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940544 SAMN22906119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.175 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940545 SAMN22908563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.697 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940546 SAMN22901957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.275 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940547 SAMN22904619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940548 SAMN22904986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940549 SAMN22908560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346378/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.409 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940550 SAMN22908559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.02 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.959 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940551 SAMN22901956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346381/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.511 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940552 SAMN22904985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346382/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.321 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940553 SAMN22904983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940554 SAMN22904984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346383/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.138 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940555 SAMN22908558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.657 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940556 SAMN22901954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.581 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940557 SAMN22901955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346389/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.711 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.062 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940558 SAMN22908557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.894 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.050 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940559 SAMN22908556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346395/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.619 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940560 SAMN22904982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346392/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.275 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940561 SAMN22900735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0346398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.838 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.332 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940562 SAMN22906315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350237/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940563 SAMN22902870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.611 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940564 SAMN22906314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.731 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940565 SAMN22906118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.462 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940566 SAMN22906313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.84 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.904 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940567 SAMN22902869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.260 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940568 SAMN22902868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.098 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940569 SAMN22906312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940570 SAMN22902867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350245/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.435 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940571 SAMN22902866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350246/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.867 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940572 SAMN22902865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.281 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940573 SAMN22906309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.020 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940574 SAMN22906308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940575 SAMN22902257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.538 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940576 SAMN22906307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.552 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940577 SAMN22906306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.502 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940578 SAMN22906305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350257/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.912 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940579 SAMN22906304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.647 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940580 SAMN22906303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.242 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940581 SAMN22906311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350248/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940582 SAMN22906310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.447 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940583 SAMN22906302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.950 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940584 SAMN22900762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.053 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940585 SAMN22906301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350264/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940586 SAMN22906300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.123 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940587 SAMN22906298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350267/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.562 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940588 SAMN22906299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.602 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940589 SAMN22906297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.408 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940590 SAMN22907635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940591 SAMN22906295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940592 SAMN22906296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.202 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940593 SAMN22907634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940594 SAMN22906294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.160 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940595 SAMN22905458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.809 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940596 SAMN22906580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350719/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.155 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940597 SAMN22906579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.953 lineage/clade name AY.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940598 SAMN22905456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.630 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940599 SAMN22905457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350721/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.768 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940600 SAMN22905455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350723/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940601 SAMN22905454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.725 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940602 SAMN22906578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350725/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.06 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.691 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940603 SAMN22902937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.677 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940604 SAMN22902936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350728/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940605 SAMN22906197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346563/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.230 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940606 SAMN22905453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.316 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940607 SAMN22906196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940608 SAMN22903976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.785 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.938 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940609 SAMN22903974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.510 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940610 SAMN22906195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940611 SAMN22903975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.633 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940612 SAMN22903972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.996 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940613 SAMN22903971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.119 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940614 SAMN22906694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0346577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.575 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940615 SAMN22908172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.776 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940616 SAMN22903973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.560 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940617 SAMN22908170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940618 SAMN22908171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940619 SAMN22908167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.177 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940620 SAMN22900907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.754 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940621 SAMN22908169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940622 SAMN22908168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.078 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940623 SAMN22906914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940624 SAMN22900906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940625 SAMN22906020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353134/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940626 SAMN22906019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.009 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940627 SAMN22902027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.658 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940628 SAMN22904377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.940 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940629 SAMN22900905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346597/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.649 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.710 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940630 SAMN22904376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.508 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.370 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940631 SAMN22904375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.713 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940632 SAMN22905893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0353143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.847 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940633 SAMN22901773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.307 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940634 SAMN22908697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0353153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.372 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940635 SAMN22902026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353154/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940636 SAMN22906966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940637 SAMN22901230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0353164/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.609 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940638 SAMN22907944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353166/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.488 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940639 SAMN22902025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353167/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.886 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940640 SAMN22902024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940641 SAMN22902023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.792 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940642 SAMN22907789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353171/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.879 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940643 SAMN22907788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940644 SAMN22908696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0353174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.959 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940645 SAMN22906965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353160/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.324 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940646 SAMN22904374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353177/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940647 SAMN22907790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.009 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940648 SAMN22908228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.010 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940649 SAMN22908227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940650 SAMN22904373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353182/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940651 SAMN22902022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353184/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.293 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940652 SAMN22904371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353185/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.842 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940653 SAMN22904372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940654 SAMN22901229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0353186/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940655 SAMN22907787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940656 SAMN22907943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940657 SAMN22906749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0353190/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940658 SAMN22901716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940659 SAMN22907320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940660 SAMN22904727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940661 SAMN22904726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940662 SAMN22905479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0353510/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940663 SAMN22904350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940664 SAMN22907203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0353502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940665 SAMN22905478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0353512/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940666 SAMN22907319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940667 SAMN22906952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.819 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940668 SAMN22906951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940669 SAMN22901001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.356 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940670 SAMN22901000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940671 SAMN22906017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.619 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940672 SAMN22908695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0353527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.967 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940673 SAMN22902005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.576 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940674 SAMN22901002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353521/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.660 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940675 SAMN22904349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.413 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940676 SAMN22901003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940677 SAMN22906016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.306 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940678 SAMN22908207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.809 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940679 SAMN22908206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.616 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940680 SAMN22908205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.194 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940681 SAMN22900998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.816 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940682 SAMN22900997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.766 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940683 SAMN22906949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.003 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940684 SAMN22900999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940685 SAMN22906950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940686 SAMN22907318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.56 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.410 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940687 SAMN22907317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.784 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.868 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940688 SAMN22907316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940689 SAMN22907315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940690 SAMN22908191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.654 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940691 SAMN22906945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.668 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940692 SAMN22906944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.145 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.788 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.810 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940693 SAMN22900989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940694 SAMN22908190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353717/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.370 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940695 SAMN22908189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940696 SAMN22904716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353719/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.487 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940697 SAMN22906012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.349 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940698 SAMN22906011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0353723/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940699 SAMN22907782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.114 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940700 SAMN22904342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353726/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.865 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940701 SAMN22904341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.341 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940702 SAMN22901707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.572 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940703 SAMN22908188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.560 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940704 SAMN22908187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.990 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940705 SAMN22906943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940706 SAMN22902000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.809 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940707 SAMN22907740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940708 SAMN22907590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0344095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.333 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940709 SAMN22907739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.749 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940710 SAMN22907738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.445 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.100 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940711 SAMN22907737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.081 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940712 SAMN22907736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.739 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940713 SAMN22903086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344104/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.108 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940714 SAMN22903085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.335 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940715 SAMN22907734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344106/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.325 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940716 SAMN22905222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344107/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940717 SAMN22904160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.113 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940718 SAMN22904159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940719 SAMN22905221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.241 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.601 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940720 SAMN22903084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.610 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940721 SAMN22907733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344116/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940722 SAMN22907732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.300 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940723 SAMN22905464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0344102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940724 SAMN22907735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344100/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.467 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940725 SAMN22907731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.969 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940726 SAMN22907730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.961 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940727 SAMN22907729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.935 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940728 SAMN22904158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.328 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940729 SAMN22907728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344123/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940730 SAMN22907727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344124/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940731 SAMN22904157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344125/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940732 SAMN22903083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940733 SAMN22905220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.355 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.940 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940734 SAMN22907726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0344129/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.901 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940735 SAMN22905219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.7 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940736 SAMN22905217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344132/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.140 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940737 SAMN22905216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344133/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.257 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.726 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940738 SAMN22905218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.520 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940739 SAMN22906141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345052/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.943 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940740 SAMN22901994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.555 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940741 SAMN22901993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.501 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940742 SAMN22901995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940743 SAMN22904695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.338 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940744 SAMN22904696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345061/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.931 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940745 SAMN22901992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.380 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940746 SAMN22908648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345065/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.608 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940747 SAMN22905094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.267 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940748 SAMN22905093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940749 SAMN22905092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.599 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940750 SAMN22905089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345073/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.987 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940751 SAMN22905090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.888 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.023 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940752 SAMN22905088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.276 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940753 SAMN22905087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940754 SAMN22908646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345077/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940755 SAMN22905091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940756 SAMN22908645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.133 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940757 SAMN22908644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940758 SAMN22908642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345089/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940759 SAMN22908643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.650 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940760 SAMN22908641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940761 SAMN22905086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940762 SAMN22908647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940763 SAMN22904694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345093/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.630 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940764 SAMN22905084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.207 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940765 SAMN22905085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940766 SAMN22904693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940767 SAMN22905083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345101/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.358 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940768 SAMN22904692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.904 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940769 SAMN22908583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345837/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.263 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940770 SAMN22908582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940771 SAMN22906140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940772 SAMN22907398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0345099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.288 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.055 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940773 SAMN22906841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.910 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940774 SAMN22906840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940775 SAMN22906839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.641 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940776 SAMN22907899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.438 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940777 SAMN22907900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.081 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940778 SAMN22907898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345845/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.6 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.515 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940779 SAMN22906838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345846/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940780 SAMN22902192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.006 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940781 SAMN22904668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.691 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940782 SAMN22907897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345853/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940783 SAMN22907893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345858/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.172 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.482 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940784 SAMN22907894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.395 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940785 SAMN22907892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.980 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940786 SAMN22907895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.102 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.269 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940787 SAMN22904667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.321 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940788 SAMN22902191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.301 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940789 SAMN22908581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940790 SAMN22905998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.511 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940791 SAMN22907147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.107 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940792 SAMN22907896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345854/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.780 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940793 SAMN22905997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345867/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940794 SAMN22905996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345868/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.323 lineage/clade name AY.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940796 SAMN22901967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345871/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940797 SAMN22901966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940798 SAMN22901965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345873/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.430 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940799 SAMN22901963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345875/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.741 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940800 SAMN22901964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345874/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940801 SAMN22901194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345876/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.396 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940802 SAMN22907146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345878/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.868 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940803 SAMN22904046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.669 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940804 SAMN22904044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940805 SAMN22904045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.429 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940806 SAMN22900985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0342952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.516 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940807 SAMN22903192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.068 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940808 SAMN22904043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.925 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.466 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940809 SAMN22906744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.527 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940810 SAMN22903191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.705 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940811 SAMN22906743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.916 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940812 SAMN22904041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.030 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940813 SAMN22904042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.648 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940814 SAMN22904039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940815 SAMN22904040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.77 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.112 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940816 SAMN22904037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.575 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940795 SAMN22901968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.362 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940817 SAMN22904038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940818 SAMN22904035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.824 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940819 SAMN22904036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.926 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940820 SAMN22904034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.978 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940821 SAMN22904033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342966/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.470 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940822 SAMN22904031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342969/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.154 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940823 SAMN22904032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342968/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.567 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940824 SAMN22903189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342972/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.010 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940825 SAMN22900984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0342973/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.409 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940826 SAMN22906742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.461 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940827 SAMN22907468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0342978/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.671 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.800 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940828 SAMN22907547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0342977/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.826 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940829 SAMN22906741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342979/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.226 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940830 SAMN22903188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342980/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940831 SAMN22903186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342982/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.144 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.989 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940832 SAMN22903187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940833 SAMN22903190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342971/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.041 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940834 SAMN22906941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0342983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940835 SAMN22907202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0343126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.980 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940836 SAMN22907201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0343127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940837 SAMN22904324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.652 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940838 SAMN22900963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.381 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940839 SAMN22904323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.647 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940840 SAMN22905409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343134/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.989 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940841 SAMN22906597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343133/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.588 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940842 SAMN22905408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.417 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940843 SAMN22904322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.387 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940844 SAMN22905407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940845 SAMN22903178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940846 SAMN22904321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940847 SAMN22904320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940848 SAMN22904319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343141/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940849 SAMN22905406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.381 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.679 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940850 SAMN22904318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343145/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.329 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940851 SAMN22905405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.044 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940852 SAMN22907780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343147/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940853 SAMN22905404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343148/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.987 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940854 SAMN22907392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0343149/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940855 SAMN22903177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343150/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940856 SAMN22907617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940857 SAMN22905403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343152/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940858 SAMN22907616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940859 SAMN22904317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343154/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940860 SAMN22904316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940861 SAMN22904315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.879 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.213 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940862 SAMN22907200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0343143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.839 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940863 SAMN22904314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.267 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.7 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.283 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940864 SAMN22907779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343158/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.250 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940865 SAMN22907778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940866 SAMN22907777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343160/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.025 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940867 SAMN22905032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940868 SAMN22905031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345661/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.456 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940869 SAMN22904671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.718 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940870 SAMN22901203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.321 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940871 SAMN22901204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345664/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.947 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940872 SAMN22906130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.351 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.240 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940873 SAMN22905030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345670/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940874 SAMN22905028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.726 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940875 SAMN22905027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940876 SAMN22905029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.333 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940877 SAMN22905026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940878 SAMN22907283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940879 SAMN22907282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.706 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940880 SAMN22907284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345677/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.967 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940881 SAMN22907281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.228 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940882 SAMN22901407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345681/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940883 SAMN22901406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345682/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940884 SAMN22907279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.857 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.931 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940885 SAMN22907280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345683/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940886 SAMN22907278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345685/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940887 SAMN22903337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.012 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940888 SAMN22901405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345688/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.182 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940889 SAMN22901404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345689/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940890 SAMN22901403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345690/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.577 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940891 SAMN22901402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345691/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.674 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940892 SAMN22905879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940893 SAMN22905878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.867 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940894 SAMN22907277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345697/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.713 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940895 SAMN22905880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345692/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.308 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940896 SAMN22905877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345698/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.523 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940897 SAMN22907276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.490 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940898 SAMN22903336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345706/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.611 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940899 SAMN22907041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.837 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940900 SAMN22902108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.280 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940901 SAMN22904458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349061/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.506 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940902 SAMN22901291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.260 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940903 SAMN22903247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.645 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940904 SAMN22903246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.854 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940905 SAMN22907231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349065/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.581 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.455 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940906 SAMN22901118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.343 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940907 SAMN22901117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940908 SAMN22907040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.859 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940909 SAMN22907230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.751 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940910 SAMN22907229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940911 SAMN22907228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.934 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940912 SAMN22901290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.550 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940913 SAMN22903245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349077/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.026 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940914 SAMN22901289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.393 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940915 SAMN22907227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940916 SAMN22907226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940917 SAMN22903907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349083/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.684 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.128 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940918 SAMN22903905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.712 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940919 SAMN22905849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349080/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.705 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940920 SAMN22903906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.907 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940921 SAMN22903903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.485 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.418 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940922 SAMN22903904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940923 SAMN22903902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.472 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940924 SAMN22903900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.114 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940925 SAMN22903901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940926 SAMN22903899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349092/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.773 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940927 SAMN22903898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349093/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940928 SAMN22903897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349094/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.630 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940929 SAMN22903896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 12.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 10.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.462 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940930 SAMN22900811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940931 SAMN22900803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349488/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940932 SAMN22900802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349489/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.698 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940933 SAMN22900801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.856 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940934 SAMN22900800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940935 SAMN22906660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.910 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940936 SAMN22900799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940937 SAMN22903886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940938 SAMN22903885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940939 SAMN22903884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940940 SAMN22903883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940941 SAMN22903882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.351 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940942 SAMN22905077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345125/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940943 SAMN22907920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.542 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.724 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940944 SAMN22908638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345123/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.257 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940945 SAMN22908639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940946 SAMN22902212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.549 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940947 SAMN22908718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.579 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940948 SAMN22908637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345134/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.939 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940949 SAMN22906138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.510 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940950 SAMN22906139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345138/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.894 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940951 SAMN22902210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940952 SAMN22902211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.571 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940953 SAMN22901991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.060 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940954 SAMN22901990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.971 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940955 SAMN22908636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345154/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940956 SAMN22904691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345160/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.573 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940957 SAMN22908635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940958 SAMN22905076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940959 SAMN22901989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.754 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940960 SAMN22900737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0345179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.694 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940961 SAMN22906137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345181/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.161 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940962 SAMN22906091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347132/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.800 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940963 SAMN22902209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940964 SAMN22906090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940965 SAMN22902832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0347136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940966 SAMN22907865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.217 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940967 SAMN22907866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940968 SAMN22907864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.432 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940969 SAMN22904937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347142/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.157 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940970 SAMN22904936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.038 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940971 SAMN22904935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347145/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940972 SAMN22904934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940973 SAMN22904933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347147/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.214 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940974 SAMN22902155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347150/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.548 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940975 SAMN22906089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940976 SAMN22906825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347152/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.144 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.500 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940977 SAMN22901928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.963 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940978 SAMN22901926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.222 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940979 SAMN22901927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940980 SAMN22904589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.47 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.963 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940981 SAMN22904932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.203 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940982 SAMN22908504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.819 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940983 SAMN22908502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347165/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.349 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940984 SAMN22908501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347167/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.923 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940985 SAMN22908503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347164/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.773 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940986 SAMN22901925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940987 SAMN22906193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.717 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940988 SAMN22907242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0347170/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.469 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940989 SAMN22904931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347171/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940990 SAMN22908500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347172/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.049 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940991 SAMN22908499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.643 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940992 SAMN22908497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347175/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.319 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940993 SAMN22904930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.309 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940994 SAMN22908498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940995 SAMN22907222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940996 SAMN22907221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.55 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.181 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940997 SAMN22901241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349871/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940998 SAMN22901240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.766 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.593 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10940999 SAMN22907220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349874/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.807 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941000 SAMN22907219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349875/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.817 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941001 SAMN22907218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349878/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941002 SAMN22903203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.144 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941003 SAMN22907216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941004 SAMN22907217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.961 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941005 SAMN22901239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349885/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.142 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941006 SAMN22907215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349886/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.166 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941007 SAMN22901238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349890/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941008 SAMN22907214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.347 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941009 SAMN22901237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349891/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.256 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941010 SAMN22907213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349892/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.571 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941011 SAMN22903202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.358 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.439 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941012 SAMN22903201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349899/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.599 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941013 SAMN22907212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941014 SAMN22907211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349900/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.894 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941015 SAMN22901085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349901/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.138 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941016 SAMN22901084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.300 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941017 SAMN22905841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941018 SAMN22905840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349908/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.514 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941019 SAMN22905842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349906/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.303 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.950 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941020 SAMN22901236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.950 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941021 SAMN22907210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349915/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.122 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941022 SAMN22907208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941023 SAMN22907209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349916/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.057 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941024 SAMN22901235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.365 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941025 SAMN22907207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941026 SAMN22901234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.232 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941027 SAMN22902848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941028 SAMN22902847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941029 SAMN22906855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.816 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.934 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941030 SAMN22902846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941031 SAMN22906259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.880 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941032 SAMN22907627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941033 SAMN22902253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941034 SAMN22906258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.720 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941035 SAMN22907626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.847 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941036 SAMN22907486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.843 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941037 SAMN22907485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350512/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.009 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941038 SAMN22907484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.138 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941039 SAMN22903827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.214 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941040 SAMN22903826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.614 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941041 SAMN22903825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941042 SAMN22900759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.685 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941043 SAMN22900758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350520/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.534 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941044 SAMN22905907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0350522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941045 SAMN22900757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.083 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941046 SAMN22902252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.021 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941047 SAMN22907417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.519 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941048 SAMN22908731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350525/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941049 SAMN22907416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.179 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941050 SAMN22907415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941051 SAMN22907414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350529/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.808 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941052 SAMN22902251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941053 SAMN22900756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.823 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941054 SAMN22900755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.067 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941055 SAMN22900754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941056 SAMN22903824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.710 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941057 SAMN22903823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.161 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941058 SAMN22903822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.379 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941059 SAMN22905670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941060 SAMN22906251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350871/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941061 SAMN22905669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941062 SAMN22905668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350873/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.290 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941063 SAMN22905667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350876/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941064 SAMN22901497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350877/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.124 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941065 SAMN22901496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350878/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941066 SAMN22905666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941067 SAMN22901495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350881/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.445 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941068 SAMN22905665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.478 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941069 SAMN22906250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350885/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941070 SAMN22901494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0350887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.925 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941071 SAMN22905663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350889/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.638 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941072 SAMN22905664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0350888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.897 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941073 SAMN22905433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941074 SAMN22904053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350896/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941075 SAMN22905432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350901/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.665 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941076 SAMN22906521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941077 SAMN22904052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350904/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.121 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941078 SAMN22902946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350905/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.273 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941079 SAMN22904051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350906/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941080 SAMN22904050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.763 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941081 SAMN22902905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350909/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.091 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941082 SAMN22902904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350910/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.298 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941083 SAMN22906520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350911/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941084 SAMN22905431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941085 SAMN22905111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350915/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.490 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941086 SAMN22906519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.789 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941087 SAMN22902903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.302 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941088 SAMN22905430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941089 SAMN22906518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350920/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.002 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941090 SAMN22905429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.074 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.797 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941091 SAMN22908219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353248/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.457 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941092 SAMN22908218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353249/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.25 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941093 SAMN22908217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.381 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.074 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941094 SAMN22908216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.670 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941095 SAMN22908215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941096 SAMN22904362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.014 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941097 SAMN22908214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941098 SAMN22904361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941099 SAMN22904360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.554 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941100 SAMN22907942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.855 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941101 SAMN22907941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353264/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.111 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941102 SAMN22907940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.720 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941103 SAMN22907939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353270/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941104 SAMN22907937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353273/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.024 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941105 SAMN22907938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.178 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941106 SAMN22907936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.902 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.186 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941107 SAMN22907935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.821 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941108 SAMN22907934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.758 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941109 SAMN22907933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941110 SAMN22907932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941111 SAMN22907931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941112 SAMN22907930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941113 SAMN22907929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353283/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941114 SAMN22907928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353286/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.601 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941115 SAMN22907927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353287/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.982 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941116 SAMN22902011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.384 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941117 SAMN22907926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0353289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.665 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941118 SAMN22902010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.732 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941119 SAMN22907322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353296/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941120 SAMN22901025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.305 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941121 SAMN22901024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.255 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941122 SAMN22901023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.500 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941123 SAMN22902247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0343637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.079 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941124 SAMN22906420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343639/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.54 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941125 SAMN22906421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343636/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941126 SAMN22906419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343641/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.640 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941127 SAMN22906418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941128 SAMN22906417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.097 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941129 SAMN22907657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.949 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941130 SAMN22906416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941131 SAMN22906415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343648/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.570 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941132 SAMN22902885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343649/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941133 SAMN22901594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.869 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941134 SAMN22906592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.678 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.922 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941135 SAMN22907656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343653/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.762 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941136 SAMN22906414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.168 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941137 SAMN22901593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.627 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941138 SAMN22901431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0343657/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.32 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.390 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941139 SAMN22906413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343658/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.725 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.700 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941140 SAMN22907460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.518 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941141 SAMN22901591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343661/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.249 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941142 SAMN22901590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.052 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941143 SAMN22901592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.071 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941144 SAMN22901589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.342 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941145 SAMN22906412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343664/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941146 SAMN22901587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.329 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.429 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941147 SAMN22901588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.774 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941148 SAMN22901586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.349 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941149 SAMN22906411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343670/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941150 SAMN22906410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941151 SAMN22901585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.308 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941152 SAMN22907655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343677/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941153 SAMN22902884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343681/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.248 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.130 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941154 SAMN22906409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.708 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941155 SAMN22908679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344705/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941156 SAMN22908678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344706/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.976 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941157 SAMN22908677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.341 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941158 SAMN22908676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.867 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941159 SAMN22905098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.994 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.144 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941160 SAMN22905097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344710/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.137 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941161 SAMN22905096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.141 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941162 SAMN22908675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.036 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941163 SAMN22905095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.096 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941164 SAMN22908673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.625 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941165 SAMN22908674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.576 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.400 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941166 SAMN22908672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941167 SAMN22900738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0344756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.819 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941168 SAMN22901999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0344757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941169 SAMN22901998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0344758/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.804 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.934 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941170 SAMN22901997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0344759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941171 SAMN22901996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0344760/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941172 SAMN22902241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.716 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941173 SAMN22902240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.508 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941174 SAMN22902239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.442 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.944 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941175 SAMN22908671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344769/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941176 SAMN22908670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.400 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941177 SAMN22908726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344771/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941178 SAMN22904710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.094 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941179 SAMN22904709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.965 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941180 SAMN22902238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.050 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941181 SAMN22902236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344778/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941182 SAMN22902237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344777/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941183 SAMN22902235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.365 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941184 SAMN22904708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.089 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941185 SAMN22906210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344788/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.213 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941186 SAMN22904707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941187 SAMN22905065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941188 SAMN22902204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.482 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.665 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941189 SAMN22905064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.809 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941190 SAMN22905063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 99 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941191 SAMN22905062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941192 SAMN22902203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941193 SAMN22907161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941194 SAMN22907160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941195 SAMN22907917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.102 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.737 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941196 SAMN22907916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.139 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.333 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941197 SAMN22907915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.521 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941198 SAMN22901211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.410 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941199 SAMN22906136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941200 SAMN22906135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941201 SAMN22906133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.407 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941202 SAMN22906134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941203 SAMN22902202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.837 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941204 SAMN22906132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.150 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941205 SAMN22901415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345472/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.948 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941206 SAMN22903345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.838 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.907 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941207 SAMN22901414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.641 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.838 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941208 SAMN22903344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.170 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941209 SAMN22907302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.410 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941210 SAMN22906923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0345478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.263 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941211 SAMN22901413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345480/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941212 SAMN22907301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941213 SAMN22907300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345484/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.694 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941214 SAMN22907298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345486/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.034 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941215 SAMN22907299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345485/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941216 SAMN22907297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.919 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941217 SAMN22901412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.828 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941218 SAMN22907296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.801 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941219 SAMN22907275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.252 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941220 SAMN22903335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941221 SAMN22908772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0345709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.308 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941222 SAMN22901401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345710/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941223 SAMN22901400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345711/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941224 SAMN22901399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941225 SAMN22907274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941226 SAMN22907151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.020 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941227 SAMN22907150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345717/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.028 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.700 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941228 SAMN22907273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941229 SAMN22907272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345719/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941230 SAMN22907271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.785 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941231 SAMN22906129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345725/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.131 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941232 SAMN22907149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941233 SAMN22901969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345723/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941234 SAMN22907148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941235 SAMN22901202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.102 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.371 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941236 SAMN22901201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345733/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.947 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.993 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941237 SAMN22901200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.053 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941238 SAMN22901198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345736/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941239 SAMN22901199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.966 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941240 SAMN22905025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345737/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941241 SAMN22905876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941242 SAMN22907912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941243 SAMN22907911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.766 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941244 SAMN22906128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.132 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.179 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941245 SAMN22904670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.351 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941246 SAMN22908597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345745/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.012 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941247 SAMN22908596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.188 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941248 SAMN22905024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345747/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941249 SAMN22908595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345748/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.202 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941250 SAMN22908594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345749/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.601 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941251 SAMN22904633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346279/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941252 SAMN22904632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941253 SAMN22904630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.542 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.210 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941254 SAMN22904629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346283/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.843 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941255 SAMN22904631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.363 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941256 SAMN22904628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346284/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941257 SAMN22904627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346285/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.6 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.856 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941258 SAMN22904626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346287/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.492 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941259 SAMN22904625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346288/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.418 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941260 SAMN22904624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346289/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.094 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941261 SAMN22907120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346290/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941262 SAMN22907119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.819 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941263 SAMN22905994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346294/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941264 SAMN22907118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.596 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941265 SAMN22908569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941266 SAMN22907117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346296/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.241 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941267 SAMN22908568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346304/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941268 SAMN22908567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.594 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941269 SAMN22901959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.954 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941270 SAMN22901960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346311/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.514 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.460 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941271 SAMN22902177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346324/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.849 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941272 SAMN22902176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346325/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941273 SAMN22904993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346329/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.290 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941274 SAMN22904992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941275 SAMN22904991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346331/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.696 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941276 SAMN22904990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941277 SAMN22904989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941278 SAMN22907328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352481/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941279 SAMN22908272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.951 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941280 SAMN22908271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.357 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941281 SAMN22908270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352485/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.419 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941282 SAMN22901688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.418 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.853 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941283 SAMN22901687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342599/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.051 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941284 SAMN22906994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352489/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941285 SAMN22901686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.040 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941286 SAMN22902899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.491 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941287 SAMN22906487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941288 SAMN22906485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941289 SAMN22906486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.954 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941290 SAMN22904715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0342605/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941291 SAMN22906484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.574 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941292 SAMN22901685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941293 SAMN22906483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.891 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941294 SAMN22905808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941295 SAMN22906482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.459 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941296 SAMN22905807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.571 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941297 SAMN22905805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.877 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941298 SAMN22905806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.497 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941299 SAMN22906481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.347 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941300 SAMN22906480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.509 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941301 SAMN22901684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.372 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941302 SAMN22906479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.470 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941303 SAMN22905803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.246 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941304 SAMN22905804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.379 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941305 SAMN22905802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.016 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941306 SAMN22901683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941307 SAMN22905801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.804 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.931 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941308 SAMN22907665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342625/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941309 SAMN22905799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.891 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941310 SAMN22905800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941311 SAMN22905798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941312 SAMN22901682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.624 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941313 SAMN22905797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.421 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941314 SAMN22906478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941315 SAMN22901584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343683/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.029 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941316 SAMN22906408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343682/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.599 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941317 SAMN22906407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.168 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941318 SAMN22902883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.291 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941319 SAMN22901583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343689/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.374 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.966 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941320 SAMN22906406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343690/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.789 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941321 SAMN22906405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343691/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.809 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941322 SAMN22901582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941323 SAMN22902882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.146 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.173 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941324 SAMN22903114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343698/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.629 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941325 SAMN22905258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.788 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941326 SAMN22906404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941327 SAMN22905256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.731 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941328 SAMN22905257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941329 SAMN22905255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.869 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941330 SAMN22901581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941331 SAMN22901580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941332 SAMN22902881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941333 SAMN22907459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.021 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941334 SAMN22906403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.469 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941335 SAMN22906402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.060 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941336 SAMN22901579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941337 SAMN22901578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343725/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941338 SAMN22906401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941339 SAMN22901576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343733/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.232 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941340 SAMN22901577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343726/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.745 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.295 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941341 SAMN22901575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.932 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941342 SAMN22906400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941343 SAMN22906399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.464 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941344 SAMN22901574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.118 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941345 SAMN22906397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941346 SAMN22905169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.648 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941347 SAMN22906398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.362 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941348 SAMN22905168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.504 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.510 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941349 SAMN22905167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.321 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941350 SAMN22905166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.816 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.910 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941351 SAMN22905165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344480/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941352 SAMN22905164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344481/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.358 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941353 SAMN22904072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 92 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.308 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941354 SAMN22905163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344489/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.514 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941355 SAMN22905162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941356 SAMN22905161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.737 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941357 SAMN22905160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.634 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941358 SAMN22905159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941359 SAMN22903050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.977 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941360 SAMN22903051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344494/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.493 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941361 SAMN22903049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.034 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941362 SAMN22903048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941363 SAMN22903046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941364 SAMN22903047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.562 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941365 SAMN22903045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.045 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941366 SAMN22905158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.397 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941367 SAMN22905157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941368 SAMN22903044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.759 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941369 SAMN22905156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344504/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.949 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.674 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941370 SAMN22905154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.930 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941371 SAMN22905155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941372 SAMN22905153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941373 SAMN22905152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.779 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941374 SAMN22905151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344510/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.397 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941375 SAMN22905150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.350 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941376 SAMN22905149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344512/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941377 SAMN22905148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.008 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941378 SAMN22903043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941379 SAMN22907295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.210 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941380 SAMN22903343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.980 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941381 SAMN22903342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.201 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941382 SAMN22901411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.324 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941383 SAMN22907294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941384 SAMN22901209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941385 SAMN22901210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.754 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.244 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941386 SAMN22907293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.028 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941387 SAMN22903341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.101 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.392 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941388 SAMN22901208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941389 SAMN22901410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.244 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941390 SAMN22907292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345510/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.384 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941391 SAMN22907159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.752 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941392 SAMN22901207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345513/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.735 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941393 SAMN22907291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.543 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941394 SAMN22907290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.468 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941395 SAMN22903340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345518/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.664 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.067 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.683 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941396 SAMN22903339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941397 SAMN22901409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345520/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.265 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941398 SAMN22901408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345521/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941399 SAMN22907289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941400 SAMN22907288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.890 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941401 SAMN22903338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.971 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941402 SAMN22907287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345525/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.19 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.679 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941403 SAMN22907286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.165 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941404 SAMN22907285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.94 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.736 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941405 SAMN22901206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941406 SAMN22905061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.560 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941407 SAMN22906002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941408 SAMN22906003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.822 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941409 SAMN22907158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.981 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941410 SAMN22907157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.420 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941411 SAMN22906001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.571 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941412 SAMN22905060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.434 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941413 SAMN22907156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941414 SAMN22904677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.849 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941415 SAMN22907386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.881 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941416 SAMN22907385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0345540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.386 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941417 SAMN22901205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.706 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941418 SAMN22908623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.510 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941419 SAMN22901980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345544/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.875 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941420 SAMN22901979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345545/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941421 SAMN22904676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.315 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941422 SAMN22908622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345549/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.841 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941423 SAMN22901978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.427 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941424 SAMN22901977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.979 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941425 SAMN22901975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941426 SAMN22901976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941427 SAMN22902201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.832 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941428 SAMN22905059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.216 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941429 SAMN22904675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941430 SAMN22905058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345557/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941431 SAMN22902200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.995 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941432 SAMN22905056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.742 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941433 SAMN22905055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.632 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941434 SAMN22905057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941435 SAMN22905054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941436 SAMN22908621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.858 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941437 SAMN22905053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.370 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941438 SAMN22908620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.056 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941439 SAMN22908619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941440 SAMN22908618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.947 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941441 SAMN22905052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941442 SAMN22903285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347283/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.374 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941443 SAMN22905051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.862 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941444 SAMN22904584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347284/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.425 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941445 SAMN22908492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347286/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.982 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941446 SAMN22908491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347287/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.003 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.751 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941447 SAMN22904912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347290/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.856 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941448 SAMN22904910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347293/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.878 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941449 SAMN22904911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347292/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941450 SAMN22908490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347294/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.087 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941451 SAMN22908489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941452 SAMN22908488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941453 SAMN22905861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0347298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.774 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941454 SAMN22904583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.138 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941455 SAMN22904582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.619 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.185 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941456 SAMN22905860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0347299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.821 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941457 SAMN22908487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347304/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.574 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941458 SAMN22901304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347303/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941459 SAMN22901922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941460 SAMN22901921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347306/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.478 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941461 SAMN22901919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347308/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.960 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941462 SAMN22901920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347307/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941463 SAMN22901918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347309/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941464 SAMN22904909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347311/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.118 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941465 SAMN22901917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347310/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.738 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941466 SAMN22904908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347312/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.216 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941467 SAMN22904906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347314/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.711 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941468 SAMN22904907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347313/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.055 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941469 SAMN22908485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.442 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941470 SAMN22908484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347318/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.073 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941471 SAMN22908486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941472 SAMN22908483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347319/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.800 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941473 SAMN22908482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347320/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.152 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941474 SAMN22904581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347322/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.593 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941475 SAMN22903228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941476 SAMN22903227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941477 SAMN22903226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941478 SAMN22903224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941479 SAMN22903225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941480 SAMN22903223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941481 SAMN22903221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941482 SAMN22903222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941483 SAMN22903219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349748/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941484 SAMN22903220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349747/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941485 SAMN22903218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349749/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941486 SAMN22903217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349751/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941487 SAMN22903216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349752/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941488 SAMN22906652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.577 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941489 SAMN22903861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.041 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941490 SAMN22900784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.860 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941491 SAMN22900783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.925 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.248 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.162 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941492 SAMN22906150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.986 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941493 SAMN22903008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941494 SAMN22908102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941495 SAMN22908101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349771/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.159 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941496 SAMN22908100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941497 SAMN22908103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349768/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.074 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941498 SAMN22908099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.816 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941499 SAMN22908098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349774/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.387 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.266 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941500 SAMN22908096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.372 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.083 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941501 SAMN22908097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.749 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941502 SAMN22908095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349777/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941503 SAMN22908094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349778/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941504 SAMN22908093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.140 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941505 SAMN22908092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349780/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.131 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941506 SAMN22908091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941508 SAMN22902824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0352596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.224 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941509 SAMN22904414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352597/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.705 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941510 SAMN22908257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.085 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941511 SAMN22908256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352599/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.714 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941512 SAMN22908255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.291 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941513 SAMN22901790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.959 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941514 SAMN22902042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352605/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.323 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941515 SAMN22904775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.784 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.768 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941516 SAMN22904774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941517 SAMN22904773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941518 SAMN22904413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.819 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941507 SAMN22901038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352594/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.300 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941519 SAMN22904772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941520 SAMN22908254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.263 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941521 SAMN22906987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941522 SAMN22906986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941523 SAMN22907323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941524 SAMN22901789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.402 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.835 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941525 SAMN22901788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.248 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941526 SAMN22908253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941527 SAMN22904771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941528 SAMN22904770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.102 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941529 SAMN22904412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941530 SAMN22904411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.357 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941531 SAMN22904410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941532 SAMN22906985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941533 SAMN22906984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.180 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941534 SAMN22901037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941535 SAMN22901787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.609 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.685 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941536 SAMN22906983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941537 SAMN22905897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0352641/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.035 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941538 SAMN22901022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941539 SAMN22906982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.108 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.517 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941540 SAMN22901021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.710 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941541 SAMN22901020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353304/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.321 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.820 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941542 SAMN22901019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.074 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941543 SAMN22902009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353306/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.193 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941544 SAMN22901772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353307/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.449 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941545 SAMN22904748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353312/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.490 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941546 SAMN22904359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.153 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941547 SAMN22901771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353318/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941548 SAMN22901770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.412 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.290 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941549 SAMN22907786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941550 SAMN22901018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353326/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.028 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941551 SAMN22907321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.550 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941552 SAMN22901017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353327/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.163 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941553 SAMN22901769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.671 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.582 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941554 SAMN22901016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353337/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941555 SAMN22901014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941556 SAMN22901015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353338/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.505 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941557 SAMN22901013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353342/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.678 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941558 SAMN22904747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353344/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941559 SAMN22904746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353345/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.226 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941560 SAMN22908213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.371 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941561 SAMN22904745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941562 SAMN22906962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941563 SAMN22908212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.600 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941564 SAMN22904744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941565 SAMN22904742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.427 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941566 SAMN22904743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353360/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.693 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941567 SAMN22904740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353367/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941568 SAMN22904741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941569 SAMN22904739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.952 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941570 SAMN22904738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353369/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.485 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941571 SAMN22907785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0353428/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.435 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941572 SAMN22901760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.014 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941573 SAMN22908210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353430/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.231 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941574 SAMN22901725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.408 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941575 SAMN22904355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.000 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941576 SAMN22901724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941577 SAMN22901721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353440/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941578 SAMN22901723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353438/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.401 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941579 SAMN22901722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.485 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941580 SAMN22904734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.185 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941581 SAMN22904733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353446/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.027 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941582 SAMN22908209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941583 SAMN22908208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353448/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.507 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941584 SAMN22904732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.265 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941585 SAMN22902008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353451/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.439 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941586 SAMN22904731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941587 SAMN22904730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.567 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941588 SAMN22904729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353457/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.990 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941589 SAMN22904728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.256 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941590 SAMN22901004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.715 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941591 SAMN22902007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.894 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.976 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941592 SAMN22901718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.330 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941593 SAMN22901719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.560 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941594 SAMN22901720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.924 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941595 SAMN22906746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0353482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.700 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941596 SAMN22903380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0353487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.663 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941597 SAMN22902006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941598 SAMN22904353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.530 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941599 SAMN22904354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.013 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941600 SAMN22904352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941601 SAMN22904351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.350 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941602 SAMN22901717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941603 SAMN22906477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941604 SAMN22901680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342636/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941605 SAMN22901679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941606 SAMN22901678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342638/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941607 SAMN22901681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.397 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941608 SAMN22906476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342639/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941609 SAMN22901677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.050 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941610 SAMN22902898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342641/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.910 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941611 SAMN22906475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941612 SAMN22901676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342643/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.038 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.696 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941613 SAMN22903942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347751/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.898 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941614 SAMN22905796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941615 SAMN22906682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347753/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.692 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941616 SAMN22906681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941617 SAMN22906186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.764 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941618 SAMN22900855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.587 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941619 SAMN22900854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941620 SAMN22906898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.896 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941621 SAMN22903026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.655 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941622 SAMN22903941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.539 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941623 SAMN22903940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347766/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.386 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941624 SAMN22900853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.115 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941625 SAMN22903939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347769/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941626 SAMN22900852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.583 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941627 SAMN22903938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.359 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941628 SAMN22906185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.698 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941629 SAMN22906184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941630 SAMN22906680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347787/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.567 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941631 SAMN22900851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.737 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941632 SAMN22906183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941633 SAMN22903937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347795/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941634 SAMN22900850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.915 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941635 SAMN22900849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.837 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941636 SAMN22900848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.479 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941637 SAMN22900847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.906 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941638 SAMN22900846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941639 SAMN22900845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347813/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.684 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941640 SAMN22900844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.582 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941641 SAMN22900843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.143 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941642 SAMN22900842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.612 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.100 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941643 SAMN22900841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347819/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.473 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941644 SAMN22900840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347822/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.981 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941645 SAMN22903936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941646 SAMN22904843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.133 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941647 SAMN22904842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941648 SAMN22904841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348395/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.290 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941649 SAMN22904840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348396/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.476 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941650 SAMN22907071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348397/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.685 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.641 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941651 SAMN22907070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.394 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941652 SAMN22905543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941653 SAMN22905542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348413/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941654 SAMN22905540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941655 SAMN22905541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941656 SAMN22905538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941657 SAMN22905539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348418/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941658 SAMN22908707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0348420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941659 SAMN22908746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941660 SAMN22906610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC0348421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941661 SAMN22908745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348428/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941662 SAMN22903265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941663 SAMN22903264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941664 SAMN22903263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348433/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941665 SAMN22906817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941666 SAMN22905984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941667 SAMN22905983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348440/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941668 SAMN22905982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348442/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941669 SAMN22905981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348443/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941670 SAMN22907378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348446/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941671 SAMN22907377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941672 SAMN22907376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348448/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941673 SAMN22907375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941674 SAMN22907374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941675 SAMN22902831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0348456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941676 SAMN22902830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0348457/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941677 SAMN22905537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941678 SAMN22901860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.672 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941679 SAMN22901859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.640 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941680 SAMN22907831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.758 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941681 SAMN22907830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349357/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.800 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941682 SAMN22907832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.103 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941683 SAMN22907828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.902 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941684 SAMN22907829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.204 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941685 SAMN22901099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.349 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941686 SAMN22901097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.430 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941687 SAMN22901098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941688 SAMN22907026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.089 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.615 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941689 SAMN22901096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349367/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941690 SAMN22902091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.241 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941691 SAMN22906869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941692 SAMN22906868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.443 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941693 SAMN22906867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.591 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941694 SAMN22907025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349373/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941695 SAMN22903242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.040 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941696 SAMN22903243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.761 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941697 SAMN22901287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349379/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.828 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941698 SAMN22901286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.246 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941699 SAMN22903241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349381/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941700 SAMN22901285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349383/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941701 SAMN22901284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.397 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941702 SAMN22901283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349385/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941703 SAMN22901282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.763 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941704 SAMN22903240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349388/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941705 SAMN22906070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.840 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941706 SAMN22902090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349391/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.001 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.941 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941707 SAMN22907827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349392/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.976 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941708 SAMN22906069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.848 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941709 SAMN22902859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350456/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.156 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941710 SAMN22907342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0349394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.129 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941711 SAMN22902858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.486 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941712 SAMN22902857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.900 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941713 SAMN22902856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941714 SAMN22902987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941715 SAMN22902855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941716 SAMN22902854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941717 SAMN22906273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.705 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941718 SAMN22902853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.725 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941719 SAMN22906272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.097 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.900 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941720 SAMN22906271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.153 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941721 SAMN22906270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.573 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.073 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941722 SAMN22906269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941723 SAMN22906268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350472/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941724 SAMN22907487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941725 SAMN22906266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.001 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941726 SAMN22906267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.668 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941727 SAMN22906265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.629 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941728 SAMN22902852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.666 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941729 SAMN22902986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941730 SAMN22906264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350480/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941731 SAMN22906263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.684 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.368 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941732 SAMN22906262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.040 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941733 SAMN22902084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0350487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.179 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941734 SAMN22907629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350488/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941735 SAMN22906261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.719 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941736 SAMN22906260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.694 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.920 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941737 SAMN22907628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0350492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941738 SAMN22902083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0350493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.847 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941739 SAMN22902851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350494/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941740 SAMN22902850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.455 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941741 SAMN22902948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350682/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941742 SAMN22902849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0350496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.000 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941743 SAMN22902947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350683/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.986 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941744 SAMN22906586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350685/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.338 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941745 SAMN22906252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941746 SAMN22908728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.464 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941747 SAMN22907402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.676 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941748 SAMN22907401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350688/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.940 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941749 SAMN22907478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350690/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.382 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941750 SAMN22907477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350691/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.666 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941751 SAMN22907476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350692/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.082 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941752 SAMN22902250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.061 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941753 SAMN22900742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.287 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941754 SAMN22905882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0350695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941755 SAMN22907400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.022 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941756 SAMN22907475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350698/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.780 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941757 SAMN22905881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0350697/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.500 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941758 SAMN22907474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941759 SAMN22907473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350700/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.483 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941760 SAMN22907472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.367 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941761 SAMN22906585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.17 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.844 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941762 SAMN22902940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.730 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941763 SAMN22905461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350705/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.897 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941764 SAMN22905460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350706/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.330 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941765 SAMN22905459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.245 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941766 SAMN22901433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VT-CDC-LC0350709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.678 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.840 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941767 SAMN22901432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VT-CDC-LC0350710/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.804 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.150 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941768 SAMN22902939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.985 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941769 SAMN22906584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941770 SAMN22906583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941771 SAMN22906582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.081 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.086 lineage/clade name AY.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941772 SAMN22906581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350716/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.941 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941773 SAMN22902938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350717/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.705 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941774 SAMN22902057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352185/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941775 SAMN22908700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0352184/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.051 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941776 SAMN22907399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0352186/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.936 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941777 SAMN22901813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941778 SAMN22904435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352192/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.476 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941779 SAMN22907334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941780 SAMN22901054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.213 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.589 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941781 SAMN22901053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352194/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.774 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941782 SAMN22901052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941783 SAMN22907333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352200/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.415 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941784 SAMN22901812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352201/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941785 SAMN22906759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941786 SAMN22906758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941787 SAMN22904801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352208/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.545 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.455 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941788 SAMN22904800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.901 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941789 SAMN22904799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941790 SAMN22908279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.500 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941791 SAMN22906051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352225/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941792 SAMN22904434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352229/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.268 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941793 SAMN22904433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.474 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941794 SAMN22901051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352232/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941795 SAMN22901811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.167 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941796 SAMN22904798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941797 SAMN22904797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.093 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941798 SAMN22904796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352240/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.246 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.836 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941799 SAMN22904795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941800 SAMN22901810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941801 SAMN22901809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.505 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941802 SAMN22908278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941803 SAMN22906757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352246/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.032 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941804 SAMN22908277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352249/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941805 SAMN22907805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.296 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941806 SAMN22902051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.754 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941807 SAMN22904792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352369/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941808 SAMN22907332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352373/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941809 SAMN22907331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.260 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941810 SAMN22907330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941811 SAMN22901801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.354 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941812 SAMN22904427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.614 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.313 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941813 SAMN22904426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352399/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.350 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941814 SAMN22904791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941815 SAMN22904790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.402 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941816 SAMN22904789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.452 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.563 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941817 SAMN22904788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352406/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.311 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941818 SAMN22904787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941819 SAMN22904786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.883 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941820 SAMN22904785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.813 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941821 SAMN22904784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.251 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941822 SAMN22904425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352414/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.386 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941823 SAMN22906049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.278 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941824 SAMN22906048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352418/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941825 SAMN22906047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941826 SAMN22907803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.048 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941827 SAMN22906046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941828 SAMN22907802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941829 SAMN22906145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0352422/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.689 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941830 SAMN22907801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352425/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.016 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941831 SAMN22902050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352430/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.988 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941832 SAMN22904783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.069 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941833 SAMN22904782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941834 SAMN22901800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352433/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.445 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.769 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941835 SAMN22904781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941836 SAMN22901799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941837 SAMN22908275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941838 SAMN22908265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352542/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941839 SAMN22908264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.594 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941840 SAMN22901791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352545/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.650 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941841 SAMN22904777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.157 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941842 SAMN22902047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352547/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.188 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941843 SAMN22907795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941844 SAMN22906036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941845 SAMN22902046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.542 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.119 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941846 SAMN22906989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.226 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941847 SAMN22906990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941848 SAMN22906988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.888 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.976 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941849 SAMN22906035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941850 SAMN22904776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.519 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941851 SAMN22908262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.857 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941852 SAMN22906755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352563/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941853 SAMN22908263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.090 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941854 SAMN22904419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.192 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941855 SAMN22902045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941856 SAMN22902044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.003 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941857 SAMN22904418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941858 SAMN22904417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.408 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.329 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941859 SAMN22904416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.755 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941860 SAMN22908261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.746 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941861 SAMN22904415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.801 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.685 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941862 SAMN22908260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.355 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941863 SAMN22908064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941864 SAMN22906034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941865 SAMN22908259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.622 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941866 SAMN22908258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941867 SAMN22906033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.282 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941868 SAMN22902043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.287 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941869 SAMN22901039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.025 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941870 SAMN22906245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941871 SAMN22901463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351118/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941872 SAMN22901462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.633 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941873 SAMN22901461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.714 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941874 SAMN22905606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941875 SAMN22906244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.614 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.157 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941876 SAMN22906243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351123/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.622 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941877 SAMN22906242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351126/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.224 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.545 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941878 SAMN22907470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0351127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.349 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941879 SAMN22901460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.074 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.254 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941880 SAMN22906241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351129/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.430 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941881 SAMN22901459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.907 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941882 SAMN22905605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.618 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941883 SAMN22905604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351133/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941884 SAMN22907621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0351135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.763 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941885 SAMN22907620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0351136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.571 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941886 SAMN22905603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941887 SAMN22901458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351139/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.301 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941888 SAMN22906240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.789 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941889 SAMN22905602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941890 SAMN22905601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351147/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.613 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941891 SAMN22905600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351148/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941892 SAMN22905599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351149/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.766 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.272 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941893 SAMN22901456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941894 SAMN22901457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.215 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941895 SAMN22906239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.067 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941896 SAMN22901455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.450 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941897 SAMN22905598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.278 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941898 SAMN22901454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351171/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.417 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941899 SAMN22905597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941900 SAMN22901453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.387 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.241 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941901 SAMN22906238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0351179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.412 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.495 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941902 SAMN22902225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345001/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.622 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941903 SAMN22902224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941904 SAMN22904702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.095 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941905 SAMN22904703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345004/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.221 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941906 SAMN22902223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941907 SAMN22902222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.567 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941908 SAMN22902221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345014/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.911 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941909 SAMN22902220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345015/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.153 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941910 SAMN22902219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.374 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941911 SAMN22902218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.519 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941912 SAMN22902217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.84 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.789 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941913 SAMN22908720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345019/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.229 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941914 SAMN22904701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.622 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.331 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941915 SAMN22904699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.202 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941916 SAMN22904698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.870 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941917 SAMN22904700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.55 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941918 SAMN22908660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.556 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941919 SAMN22908659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.116 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941920 SAMN22904697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345028/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.626 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941921 SAMN22902216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941922 SAMN22908658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.165 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.572 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941923 SAMN22908657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.086 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941924 SAMN22908656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941925 SAMN22908655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.930 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941926 SAMN22908654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345038/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941927 SAMN22908653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.087 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941928 SAMN22908652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.268 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941929 SAMN22908651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.276 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941930 SAMN22908650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.151 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941931 SAMN22906008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0345046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941932 SAMN22908649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.495 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941933 SAMN22902215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.690 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941934 SAMN22905836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.648 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941935 SAMN22907669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.711 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941936 SAMN22907668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941937 SAMN22905835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.266 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941938 SAMN22903977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.833 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.855 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941939 SAMN22906696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0346544/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 10.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.602 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941940 SAMN22906199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346547/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941941 SAMN22906695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0346548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.625 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941942 SAMN22900913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 11.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941943 SAMN22903033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.517 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941944 SAMN22900912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941945 SAMN22900911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.318 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941946 SAMN22900910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.502 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941947 SAMN22900909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346557/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.923 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941948 SAMN22900908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.269 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941949 SAMN22906198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941950 SAMN22902069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351780/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.711 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941951 SAMN22908703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0351783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.109 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941952 SAMN22908702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0351784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.542 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.636 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941953 SAMN22903508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0351786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.564 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941954 SAMN22906762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0351785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941955 SAMN22908246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941956 SAMN22908247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.398 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941957 SAMN22908245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.009 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941958 SAMN22908243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352700/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.128 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941959 SAMN22908244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352698/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.766 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941960 SAMN22904402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.706 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941961 SAMN22908242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.001 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941962 SAMN22908241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.678 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.644 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941963 SAMN22908240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941964 SAMN22908239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941965 SAMN22907794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941966 SAMN22908238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941967 SAMN22908699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0352710/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941968 SAMN22902041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941969 SAMN22906750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0352713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941970 SAMN22904401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352716/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.900 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941971 SAMN22904400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.374 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.858 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941972 SAMN22904399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352719/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.256 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941973 SAMN22904398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.585 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941974 SAMN22904397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352721/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.683 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941975 SAMN22906977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.247 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941976 SAMN22906976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352723/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941977 SAMN22905894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0352724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.015 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941978 SAMN22904396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352726/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.940 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941979 SAMN22904395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352728/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.489 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941980 SAMN22904394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.685 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941981 SAMN22904393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352730/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.466 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941982 SAMN22904392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.457 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941983 SAMN22904391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.871 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941984 SAMN22908237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352737/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.204 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941985 SAMN22908236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.858 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.044 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941986 SAMN22908235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.369 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941987 SAMN22904390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941988 SAMN22904389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.388 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941989 SAMN22908234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352749/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.998 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941990 SAMN22904388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352753/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.102 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941991 SAMN22902040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941992 SAMN22902039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.782 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.741 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941993 SAMN22904387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.127 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941994 SAMN22902038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352767/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941995 SAMN22904766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352771/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941996 SAMN22904765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.482 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.631 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941997 SAMN22904764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941998 SAMN22904763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.003 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10941999 SAMN22904762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.116 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942000 SAMN22908063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942001 SAMN22908061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.097 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942002 SAMN22908062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.218 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942003 SAMN22908060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.735 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942004 SAMN22908059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942005 SAMN22908058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352787/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.323 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942006 SAMN22908057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.556 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942007 SAMN22908056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352792/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942008 SAMN22908055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942009 SAMN22908053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.095 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.829 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942010 SAMN22908054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352794/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.367 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.541 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942011 SAMN22908050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352799/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942012 SAMN22908052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.280 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942013 SAMN22908051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352798/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.696 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942014 SAMN22908049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.153 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942015 SAMN22908048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352801/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.401 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942016 SAMN22908047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.709 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942017 SAMN22908046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352803/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.523 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942018 SAMN22908045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.612 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942019 SAMN22901157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347236/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.324 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.687 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942020 SAMN22904586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347237/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.056 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.644 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942021 SAMN22900729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0347241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.484 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942022 SAMN22907860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942023 SAMN22902154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942024 SAMN22904585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347245/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.080 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942025 SAMN22904915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347246/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.414 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942026 SAMN22904914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.508 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942027 SAMN22904913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347248/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942028 SAMN22901923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.575 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942029 SAMN22901156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.874 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942030 SAMN22907096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.007 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942031 SAMN22901155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.195 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942032 SAMN22907095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.010 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942033 SAMN22907094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942034 SAMN22908493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942035 SAMN22901313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.319 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.356 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942036 SAMN22901312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.199 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942037 SAMN22903289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942038 SAMN22901311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347264/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942039 SAMN22901310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.002 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.464 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942040 SAMN22903288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347268/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.898 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942041 SAMN22903287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347269/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942042 SAMN22907093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.645 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942043 SAMN22906909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942044 SAMN22903286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0347273/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.176 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942045 SAMN22901308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.871 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942046 SAMN22901309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942047 SAMN22901307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.410 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942048 SAMN22907092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.296 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942049 SAMN22901306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.446 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942050 SAMN22901305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.686 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.812 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942051 SAMN22900862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.925 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942052 SAMN22900861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.545 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.286 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942053 SAMN22906688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.730 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942054 SAMN22906687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.563 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942055 SAMN22906686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347705/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942056 SAMN22906901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.289 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942057 SAMN22906189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347706/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.954 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.220 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942058 SAMN22903952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347710/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942059 SAMN22906900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.610 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942060 SAMN22903028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.089 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942061 SAMN22903951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347711/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.474 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942062 SAMN22903950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.251 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942063 SAMN22903027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.267 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942064 SAMN22903949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347721/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.212 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942065 SAMN22900860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347725/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.059 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942066 SAMN22906899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.942 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942067 SAMN22900859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.325 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942068 SAMN22900858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347728/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.427 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.597 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942069 SAMN22903947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347732/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.368 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.229 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942070 SAMN22903948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347731/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942071 SAMN22906685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.111 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942072 SAMN22903946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347736/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.711 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942073 SAMN22906188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.990 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942074 SAMN22903945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.624 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942075 SAMN22906684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942076 SAMN22906187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942077 SAMN22906683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942078 SAMN22900856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347745/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942079 SAMN22900857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.548 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942080 SAMN22903943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347750/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.855 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942081 SAMN22906338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0347748/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.410 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942082 SAMN22903944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347749/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.564 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.389 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942083 SAMN22901121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.708 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942084 SAMN22901120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.619 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.983 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942085 SAMN22908431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.157 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942086 SAMN22908430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942087 SAMN22907066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348926/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942088 SAMN22908429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.642 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942089 SAMN22908428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348933/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.280 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942090 SAMN22901877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348934/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.721 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942091 SAMN22908427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348935/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942092 SAMN22904492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348937/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942093 SAMN22904493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.791 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942094 SAMN22901876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942095 SAMN22902117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.084 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942096 SAMN22902118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.848 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942097 SAMN22907064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.802 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942098 SAMN22907065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942099 SAMN22906891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0348946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942100 SAMN22907063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.184 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.079 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942101 SAMN22904491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942102 SAMN22904490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.638 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942103 SAMN22908426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.445 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942104 SAMN22901119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942105 SAMN22905915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942106 SAMN22908425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942107 SAMN22908424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942108 SAMN22902116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.610 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942109 SAMN22902115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.336 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942110 SAMN22902114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.079 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942111 SAMN22907062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348967/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942112 SAMN22904489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348970/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.640 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942113 SAMN22906768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.355 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.782 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942114 SAMN22904488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348971/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.497 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942115 SAMN22900753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942116 SAMN22908730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.489 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942117 SAMN22907413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.077 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942118 SAMN22908729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.524 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942119 SAMN22907411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350545/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942120 SAMN22907412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350544/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942121 SAMN22900751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350547/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942122 SAMN22906623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942123 SAMN22900752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.788 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942124 SAMN22906622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.114 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942125 SAMN22906854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.230 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942126 SAMN22906621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.798 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.873 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942127 SAMN22906620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.360 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942128 SAMN22900750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942129 SAMN22907410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942130 SAMN22907409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.89 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942131 SAMN22906853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.355 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.125 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942132 SAMN22907408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.155 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942133 SAMN22906619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.423 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942134 SAMN22906852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350563/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.872 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942135 SAMN22903821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942136 SAMN22903820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942137 SAMN22903818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.249 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942138 SAMN22903819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.879 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.261 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942139 SAMN22903805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.230 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942140 SAMN22906851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0350571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.742 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942141 SAMN22900749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942142 SAMN22900747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.732 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942143 SAMN22900746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.849 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942144 SAMN22900748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.390 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942145 SAMN22900745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942146 SAMN22906618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942147 SAMN22905747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342878/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.002 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.868 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942148 SAMN22905746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.849 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942149 SAMN22905745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.474 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942150 SAMN22901639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.019 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942151 SAMN22905744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.285 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942152 SAMN22901638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.544 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942153 SAMN22906454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342891/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.540 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942154 SAMN22905743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942155 SAMN22901637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.769 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942156 SAMN22901636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342895/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.061 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942157 SAMN22901634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342903/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942158 SAMN22901635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.017 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942159 SAMN22906453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342908/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.859 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942160 SAMN22905742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342909/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.546 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942161 SAMN22901633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342912/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942162 SAMN22901632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342913/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942163 SAMN22905741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342921/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942164 SAMN22901631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942165 SAMN22905740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942166 SAMN22905739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.847 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942167 SAMN22905738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.994 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942168 SAMN22905737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342925/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.560 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942169 SAMN22902891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342929/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942170 SAMN22905736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.070 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942171 SAMN22905734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.060 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942172 SAMN22905735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.581 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.602 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942173 SAMN22901630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342935/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942174 SAMN22906942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0342938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942175 SAMN22900987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0342939/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.774 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942176 SAMN22900986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0342941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.829 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942177 SAMN22904048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.195 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942178 SAMN22904047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.116 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942179 SAMN22903170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343234/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942180 SAMN22904304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.464 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942181 SAMN22904302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343237/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.659 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942182 SAMN22904303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343236/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.753 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942183 SAMN22904301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942184 SAMN22904300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.126 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942185 SAMN22904298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.732 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942186 SAMN22904299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942187 SAMN22904297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.385 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942188 SAMN22905394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343245/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942189 SAMN22905393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343246/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.239 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942190 SAMN22905392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.89 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942191 SAMN22905391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343248/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942192 SAMN22905390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343249/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942193 SAMN22903169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942194 SAMN22903168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.377 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942195 SAMN22904296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.630 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942196 SAMN22903167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942197 SAMN22904295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942198 SAMN22905389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942199 SAMN22904294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.577 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942200 SAMN22905388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343257/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.988 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942201 SAMN22904293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.784 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942202 SAMN22905387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942204 SAMN22905385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343261/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942205 SAMN22905384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 95 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.341 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942206 SAMN22903166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343262/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942207 SAMN22905383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343264/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942208 SAMN22905382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.912 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942209 SAMN22905381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.157 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942210 SAMN22905380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343267/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.129 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942211 SAMN22907252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.659 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942212 SAMN22901358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942213 SAMN22901357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346049/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942214 SAMN22901356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942215 SAMN22907251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.435 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942216 SAMN22901355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346053/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.908 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942217 SAMN22901354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346054/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.534 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942218 SAMN22901353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.178 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942219 SAMN22907250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942220 SAMN22907249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346061/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.178 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942203 SAMN22905386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942221 SAMN22901352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942222 SAMN22907248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.728 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942223 SAMN22901351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.623 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942224 SAMN22907247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346065/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.685 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942225 SAMN22903316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.618 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942226 SAMN22907246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0346068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.450 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942227 SAMN22901184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942228 SAMN22901183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942229 SAMN22907137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.080 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942230 SAMN22901182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.939 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942231 SAMN22903315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.529 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.731 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942232 SAMN22903314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.149 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942233 SAMN22903313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346077/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.511 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942234 SAMN22903312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0346078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.087 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942235 SAMN22901349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346081/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942236 SAMN22901350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.794 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942237 SAMN22901348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346082/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942238 SAMN22902190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942239 SAMN22907136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.56 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942240 SAMN22907135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.016 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942241 SAMN22903032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.669 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942242 SAMN22901347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.139 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.872 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942243 SAMN22907134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942244 SAMN22903970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.815 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942245 SAMN22903969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942246 SAMN22900904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.469 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942247 SAMN22900903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.071 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.449 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942248 SAMN22900902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346605/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.283 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942249 SAMN22900901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.711 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942250 SAMN22900900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.146 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.589 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942251 SAMN22906339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0346610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.319 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942252 SAMN22900899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.222 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942253 SAMN22900897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.394 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942254 SAMN22900898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.858 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942255 SAMN22900896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.570 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942256 SAMN22900893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.327 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942257 SAMN22900895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.188 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942258 SAMN22900894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942259 SAMN22900892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942260 SAMN22900891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.017 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942261 SAMN22900890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346625/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.104 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942262 SAMN22900888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346631/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942263 SAMN22900889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346630/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.115 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942264 SAMN22900887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942265 SAMN22900886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942266 SAMN22900884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.380 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942267 SAMN22900885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.529 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942268 SAMN22900882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346637/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.208 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942269 SAMN22900881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346638/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.47 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.567 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942270 SAMN22900883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346636/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.819 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942271 SAMN22903968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.630 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942272 SAMN22900880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346639/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.609 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.120 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942273 SAMN22900879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346641/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.038 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942274 SAMN22907236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0348228/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942275 SAMN22903280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348235/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942276 SAMN22900878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.476 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942277 SAMN22903278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942278 SAMN22903279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348238/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942279 SAMN22903277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348240/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942280 SAMN22903275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942281 SAMN22903274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942282 SAMN22903276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942283 SAMN22908763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942284 SAMN22908762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942285 SAMN22908764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348245/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942286 SAMN22903980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.304 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942287 SAMN22903981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.705 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942288 SAMN22903982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.560 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942289 SAMN22907111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.283 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942290 SAMN22903979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.218 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.964 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942291 SAMN22903978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.209 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942292 SAMN22903038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346528/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942293 SAMN22903037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.366 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942294 SAMN22906916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.595 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942295 SAMN22906917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.200 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942296 SAMN22903036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.721 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942297 SAMN22906915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0346536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.835 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942298 SAMN22903035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.179 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942299 SAMN22903034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0346540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.949 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942300 SAMN22900914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.526 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942301 SAMN22906200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0346541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942302 SAMN22906081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942303 SAMN22906082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942304 SAMN22901144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.357 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942305 SAMN22907088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347478/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.432 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942306 SAMN22907086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347480/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.352 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942307 SAMN22907087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.417 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942308 SAMN22907085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347481/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942309 SAMN22901143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347482/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.571 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942310 SAMN22901904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347483/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942311 SAMN22904883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347484/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942312 SAMN22904882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347485/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942313 SAMN22907853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347487/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942314 SAMN22904881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347486/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.933 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942315 SAMN22904563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347488/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.058 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942316 SAMN22907852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347489/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.274 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942317 SAMN22904562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942318 SAMN22904559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942319 SAMN22904561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942320 SAMN22904560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.178 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942321 SAMN22902147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347494/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.126 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942322 SAMN22902146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.048 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942323 SAMN22907440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0347499/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942324 SAMN22904558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942325 SAMN22902145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.539 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.140 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942326 SAMN22904557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.373 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942327 SAMN22904556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347500/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942328 SAMN22902143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.734 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942329 SAMN22902144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942330 SAMN22906080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942331 SAMN22904554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347506/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.037 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942332 SAMN22904555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.246 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942333 SAMN22904553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347507/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.505 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942334 SAMN22904880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.111 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942335 SAMN22904879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347549/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.077 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942336 SAMN22901903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942337 SAMN22904545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942338 SAMN22902142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942339 SAMN22904878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347557/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.563 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942340 SAMN22904877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942341 SAMN22904544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.041 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942342 SAMN22904875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942343 SAMN22904876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.835 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942344 SAMN22901902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.67 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.237 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942345 SAMN22901901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.965 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942346 SAMN22902141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942347 SAMN22904874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.434 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.943 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942348 SAMN22904873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942349 SAMN22902140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942350 SAMN22902139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942351 SAMN22902138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.944 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942352 SAMN22904543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942353 SAMN22904542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.840 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942354 SAMN22904541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.618 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942355 SAMN22904540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347576/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942356 SAMN22904539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942357 SAMN22904538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.140 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942358 SAMN22904537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.706 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942359 SAMN22904536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.431 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942360 SAMN22904535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942361 SAMN22904534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.130 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942362 SAMN22904533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942363 SAMN22904532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347585/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942364 SAMN22904531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.763 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942365 SAMN22907084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942366 SAMN22900833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.924 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942367 SAMN22906337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0347880/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.254 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942368 SAMN22906894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.709 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942369 SAMN22900832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.996 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942370 SAMN22903019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.178 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942371 SAMN22906182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347886/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.038 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942372 SAMN22903018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347885/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942373 SAMN22906181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.283 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942374 SAMN22906180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.230 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942375 SAMN22906676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347889/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.560 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942376 SAMN22906892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347892/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.659 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942377 SAMN22906893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347891/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.379 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942378 SAMN22900831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942379 SAMN22906179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.432 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942380 SAMN22903928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347895/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.539 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942381 SAMN22906177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347897/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.959 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942382 SAMN22906178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347896/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.380 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942383 SAMN22906675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.980 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942384 SAMN22903927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347900/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.841 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942385 SAMN22900830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347904/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.920 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942386 SAMN22900829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347908/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942387 SAMN22900828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347910/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942388 SAMN22906674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347912/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.429 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942389 SAMN22903925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942390 SAMN22903926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347913/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.060 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942391 SAMN22903924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347915/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.756 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942392 SAMN22906673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0347918/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942393 SAMN22900827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.589 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942394 SAMN22906176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347920/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.809 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942395 SAMN22900826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.557 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942396 SAMN22903923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.422 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942397 SAMN22903922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347926/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.396 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942398 SAMN22906573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350752/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.045 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.596 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942399 SAMN22906572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350753/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.091 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942400 SAMN22906571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.960 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942401 SAMN22906570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.103 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942402 SAMN22906569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.322 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942403 SAMN22902924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942404 SAMN22906568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350758/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.833 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942405 SAMN22906567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.02 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942406 SAMN22902923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350760/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.737 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942407 SAMN22905448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942408 SAMN22906224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC0350762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.378 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942409 SAMN22906566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350763/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942410 SAMN22906565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.675 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942411 SAMN22906564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942412 SAMN22906563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350766/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.789 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942413 SAMN22906562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350767/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.840 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942414 SAMN22906561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350768/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.216 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942415 SAMN22905447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.466 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942416 SAMN22905446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350771/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942417 SAMN22906560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.094 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942418 SAMN22906559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350774/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.634 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942419 SAMN22906558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.467 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942420 SAMN22906557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.458 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942421 SAMN22902922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.888 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.943 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.117 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942422 SAMN22906556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350780/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.200 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942423 SAMN22906555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350781/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942424 SAMN22906554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942425 SAMN22902921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.354 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942426 SAMN22902920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942427 SAMN22902919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0350785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.760 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942428 SAMN22906553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.62 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.462 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942429 SAMN22906552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0350789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.406 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942430 SAMN22908012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942431 SAMN22908011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352856/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942432 SAMN22908010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942433 SAMN22908009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.775 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942434 SAMN22908008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.683 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942435 SAMN22908007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942436 SAMN22908006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352863/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.755 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942437 SAMN22908005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.101 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.815 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942438 SAMN22908004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.332 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942439 SAMN22908003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352867/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942440 SAMN22908001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.47 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.379 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942441 SAMN22908000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.613 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942442 SAMN22908002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352868/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942443 SAMN22907999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352871/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942444 SAMN22907997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352873/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.028 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942445 SAMN22907998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.148 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942446 SAMN22907995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352875/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.588 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942447 SAMN22907996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352874/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942448 SAMN22901232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0352879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.860 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942449 SAMN22901231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0352880/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.573 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.968 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942450 SAMN22903197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0352882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942451 SAMN22907993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.309 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942452 SAMN22907994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.534 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942453 SAMN22907992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.741 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.150 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942454 SAMN22907990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352898/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942455 SAMN22907991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352897/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.11 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942456 SAMN22907989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352901/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.584 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942457 SAMN22907988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.529 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.664 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942458 SAMN22907987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.555 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942459 SAMN22907986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352909/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942460 SAMN22907985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352910/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.858 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942461 SAMN22907984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352911/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.682 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942462 SAMN22907314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.342 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942463 SAMN22906948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.241 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.349 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942464 SAMN22900996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.852 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942465 SAMN22901715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.675 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942466 SAMN22901714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353576/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.703 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942467 SAMN22902004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.399 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942468 SAMN22904725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353582/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.699 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942469 SAMN22904724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942470 SAMN22904723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942471 SAMN22904722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942472 SAMN22907313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.301 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942473 SAMN22907312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.515 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942474 SAMN22901713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353591/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.802 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942475 SAMN22901712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.595 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942476 SAMN22902003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0353593/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.019 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942477 SAMN22901711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0353595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942478 SAMN22900995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.053 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.537 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942479 SAMN22900994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353601/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.610 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942480 SAMN22906947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.808 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942481 SAMN22908204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.263 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.017 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942482 SAMN22904348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942483 SAMN22907311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0353608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942484 SAMN22906946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0353611/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942485 SAMN22900993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0353613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.234 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942486 SAMN22908203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.154 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942487 SAMN22908202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.601 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942488 SAMN22904721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0353616/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.449 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942489 SAMN22904347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942490 SAMN22908201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.266 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942491 SAMN22908200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942492 SAMN22904346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0353622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.310 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942493 SAMN22908199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0353623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.011 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942494 SAMN22901699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.968 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942495 SAMN22905820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.298 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942496 SAMN22901698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.323 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942497 SAMN22902249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0342561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.310 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942498 SAMN22906745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342563/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.467 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.253 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942499 SAMN22907549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0342562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.953 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942500 SAMN22905819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942501 SAMN22905818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.925 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.825 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942502 SAMN22905817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942503 SAMN22905816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942504 SAMN22901697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.7 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.587 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942505 SAMN22901696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942506 SAMN22905815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.658 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942507 SAMN22901695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.025 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942508 SAMN22901694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342573/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942509 SAMN22901693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342574/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942510 SAMN22901692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.123 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942511 SAMN22901691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342576/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.92 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942512 SAMN22907548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0342577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942513 SAMN22906491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942514 SAMN22901690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342580/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.222 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942515 SAMN22905813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342583/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.008 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.946 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942516 SAMN22905812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342584/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.080 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942517 SAMN22905814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342581/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.917 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942518 SAMN22905811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342585/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.296 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942519 SAMN22906490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342587/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.701 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942520 SAMN22906605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0342586/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.921 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942521 SAMN22906489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342588/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942522 SAMN22901689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.350 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942523 SAMN22906488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342590/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.630 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942524 SAMN22905810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342595/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.387 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942525 SAMN22905809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942526 SAMN22904943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.091 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942527 SAMN22908709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0347044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.507 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942528 SAMN22902159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942529 SAMN22902158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942530 SAMN22907871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347049/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.837 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942531 SAMN22902156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942532 SAMN22906828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347052/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942533 SAMN22902157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.199 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942534 SAMN22907102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347053/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.116 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.579 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942535 SAMN22907101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347054/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.374 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942536 SAMN22905986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0347055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.780 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942537 SAMN22908512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.437 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942538 SAMN22908511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942539 SAMN22908510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.730 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942540 SAMN22906194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.710 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942541 SAMN22906827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0347063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942542 SAMN22907870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942543 SAMN22907869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0347067/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942544 SAMN22906100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347068/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.213 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942545 SAMN22901314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0347070/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.734 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942546 SAMN22901935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347071/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.155 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942547 SAMN22906099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942548 SAMN22904592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.344 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942549 SAMN22904591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.648 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942550 SAMN22901934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347073/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.832 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942551 SAMN22904942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.992 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942552 SAMN22908509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.262 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942553 SAMN22901933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.460 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942554 SAMN22904941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347081/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.512 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942555 SAMN22908506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942556 SAMN22908507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347083/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.317 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942557 SAMN22908508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347082/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.396 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942558 SAMN22906148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0350327/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.525 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942559 SAMN22905462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0350328/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.945 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942560 SAMN22904054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350331/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.382 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942561 SAMN22904055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0350330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.524 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942562 SAMN22905117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.769 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942563 SAMN22905116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350333/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.250 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942564 SAMN22905115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.563 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942565 SAMN22902988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350338/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.116 lineage/clade name AY.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942566 SAMN22905112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350340/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942567 SAMN22905113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942568 SAMN22905114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0350335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942569 SAMN22906643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350345/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.370 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942570 SAMN22907495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350341/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942571 SAMN22906642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.396 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942572 SAMN22906641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.019 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.584 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942573 SAMN22907693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0350348/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942574 SAMN22907494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350352/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.534 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942575 SAMN22902256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.54 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942576 SAMN22907493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.967 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942577 SAMN22906640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.76 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942578 SAMN22906638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350359/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.237 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942579 SAMN22906639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350358/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.524 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942580 SAMN22906637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.890 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942581 SAMN22903848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350360/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.534 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942582 SAMN22906635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942583 SAMN22906636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.908 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942584 SAMN22903847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.286 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942585 SAMN22903845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350367/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.185 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942586 SAMN22907425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.553 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942587 SAMN22903846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.999 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942588 SAMN22906634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350369/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.249 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942589 SAMN22906053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942590 SAMN22903844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.055 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942591 SAMN22906052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.206 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942592 SAMN22904442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352127/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.409 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942593 SAMN22908288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352128/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942594 SAMN22908285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352131/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.079 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942595 SAMN22908286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352130/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942596 SAMN22908287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352129/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.968 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942597 SAMN22908284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352132/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.879 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942598 SAMN22904441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352135/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942599 SAMN22902061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352136/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942600 SAMN22902060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352137/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.776 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942601 SAMN22902059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352144/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942602 SAMN22907337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352143/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.950 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942603 SAMN22907806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352140/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942604 SAMN22901816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352145/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942605 SAMN22901815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352146/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.442 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.850 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942606 SAMN22907335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352151/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.636 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942607 SAMN22907336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352148/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.736 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942608 SAMN22904440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352154/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.508 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942609 SAMN22904803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.748 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942610 SAMN22908282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352160/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942611 SAMN22908283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.428 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942612 SAMN22904802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.730 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942613 SAMN22902058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.494 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942614 SAMN22908281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352161/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.051 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942615 SAMN22908280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.794 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942616 SAMN22904439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352170/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.902 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942617 SAMN22904438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352172/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942618 SAMN22904437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942619 SAMN22904436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352177/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.193 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942620 SAMN22901814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942621 SAMN22903492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0352183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.596 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942622 SAMN22906059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0351788/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.975 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942623 SAMN22901074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942624 SAMN22905901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351791/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.856 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942625 SAMN22907006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.738 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942626 SAMN22907007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351792/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942627 SAMN22907005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351794/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942628 SAMN22901073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351795/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.036 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942629 SAMN22907004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.534 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942630 SAMN22907809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351799/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.913 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942631 SAMN22907808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351800/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.675 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942632 SAMN22901072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351807/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942633 SAMN22907003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351808/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.284 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942634 SAMN22901071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942635 SAMN22905839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0351810/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942636 SAMN22901070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942637 SAMN22901069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942638 SAMN22901068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.718 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942639 SAMN22906761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0351816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.568 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942640 SAMN22902068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0351817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.19 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942641 SAMN22908306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942642 SAMN22901067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351824/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.860 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942643 SAMN22901066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.308 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942644 SAMN22906058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0351833/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.942 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942645 SAMN22901065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351834/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.406 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942646 SAMN22901064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.126 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942647 SAMN22905900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0351838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.522 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942648 SAMN22901063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.816 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.198 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942649 SAMN22904816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.535 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942650 SAMN22904445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.060 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942651 SAMN22901839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.389 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942652 SAMN22901840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351842/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.705 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942653 SAMN22901838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 20.269 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942654 SAMN22907461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942655 SAMN22904280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.526 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942656 SAMN22904279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.798 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942657 SAMN22905368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.783 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942658 SAMN22905369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343367/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942659 SAMN22904278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343369/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942660 SAMN22905367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.857 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942661 SAMN22905366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343373/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.266 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942662 SAMN22903154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343374/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942663 SAMN22905365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.280 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942664 SAMN22903153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.285 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942665 SAMN22903152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.6 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942666 SAMN22903151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343378/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942667 SAMN22905364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343379/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.580 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942668 SAMN22905363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343381/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.716 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942669 SAMN22905362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343382/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942670 SAMN22904277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.027 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942671 SAMN22905361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343383/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.571 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942672 SAMN22905360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942673 SAMN22903150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.374 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.535 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942674 SAMN22903149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343387/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.045 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942675 SAMN22905359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343388/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942676 SAMN22905358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343389/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.622 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.814 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942677 SAMN22904260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.268 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942678 SAMN22905357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343391/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.655 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.770 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942679 SAMN22905356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343392/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.367 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942680 SAMN22905355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.858 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942681 SAMN22905354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942682 SAMN22903148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343395/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.945 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942683 SAMN22905353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343396/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.379 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942684 SAMN22905352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343397/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.067 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942685 SAMN22903147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343399/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.842 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942686 SAMN22904147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344175/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942687 SAMN22905212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.292 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942688 SAMN22903079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344177/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942689 SAMN22905211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344178/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.860 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942690 SAMN22903078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344180/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.954 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942691 SAMN22905210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942692 SAMN22904146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344181/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.082 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942693 SAMN22903077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.207 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942694 SAMN22904145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.925 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.376 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942695 SAMN22905209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344186/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942696 SAMN22904144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344188/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.525 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942697 SAMN22905208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.92 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.700 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942698 SAMN22905207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344190/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.353 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942699 SAMN22905206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942700 SAMN22903076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.802 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.811 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942701 SAMN22904143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.506 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942702 SAMN22904142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344197/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942703 SAMN22904141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344198/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.684 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942704 SAMN22904140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344199/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.820 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942705 SAMN22905205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.622 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.788 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942706 SAMN22904139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344200/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942707 SAMN22905204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.961 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942708 SAMN22905202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344205/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.568 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942709 SAMN22905203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.379 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.000 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942710 SAMN22903075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.122 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942711 SAMN22903074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344208/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942712 SAMN22903073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344209/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.311 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942713 SAMN22903072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.132 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.573 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942714 SAMN22905201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942715 SAMN22902944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0344213/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.763 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942716 SAMN22905200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.062 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942717 SAMN22904123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.760 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942718 SAMN22904138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942719 SAMN22904122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942720 SAMN22904120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.678 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942721 SAMN22904121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344261/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942722 SAMN22905188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.753 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942723 SAMN22904119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344267/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942724 SAMN22904118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344268/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.569 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942725 SAMN22904117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344269/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942726 SAMN22904116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344270/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.371 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942727 SAMN22904114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344272/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942728 SAMN22904115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.493 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942729 SAMN22904113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.520 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942730 SAMN22903064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942731 SAMN22904111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344277/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.192 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942732 SAMN22904112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.506 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942733 SAMN22904110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942734 SAMN22904109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344279/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942735 SAMN22903063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344280/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.434 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.595 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942736 SAMN22903062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.544 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942737 SAMN22904108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344283/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.849 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942738 SAMN22905187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344284/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.074 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942739 SAMN22903061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344286/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942740 SAMN22905186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344285/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942741 SAMN22906357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344290/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942742 SAMN22904107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344291/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942743 SAMN22904106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344293/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942744 SAMN22905184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344297/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942745 SAMN22903059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344296/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.780 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942746 SAMN22903060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344294/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.580 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942747 SAMN22905185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344295/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.089 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942748 SAMN22905183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344298/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.672 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942749 SAMN22905182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.700 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942750 SAMN22906590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0344300/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.183 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942751 SAMN22906937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344301/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.144 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942752 SAMN22906589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0344302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.091 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942753 SAMN22905181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344303/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.492 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942754 SAMN22905180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344304/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942755 SAMN22904105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.732 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942756 SAMN22904104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344308/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.012 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942757 SAMN22904103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344309/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942758 SAMN22904102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344310/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.690 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942759 SAMN22904101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344313/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942760 SAMN22905179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344314/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942761 SAMN22903058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.992 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942762 SAMN22905178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.624 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942763 SAMN22904100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.694 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942764 SAMN22904099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344318/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.481 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942765 SAMN22905177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344319/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.608 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.380 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942766 SAMN22904098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344320/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.768 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942767 SAMN22904097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344322/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.016 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942768 SAMN22904096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.490 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942769 SAMN22904095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344324/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942770 SAMN22904094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344327/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942771 SAMN22904093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344328/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.642 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942772 SAMN22904092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344329/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.141 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942773 SAMN22904090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344331/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.868 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942774 SAMN22904091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942775 SAMN22904089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.126 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942776 SAMN22901428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.277 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942777 SAMN22903057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344336/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942778 SAMN22904088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.972 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942779 SAMN22905176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344340/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.421 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942780 SAMN22904087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344342/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.437 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942781 SAMN22904086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344343/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.049 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942782 SAMN22904084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344348/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.439 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942783 SAMN22904085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942784 SAMN22903056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942785 SAMN22904082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.994 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.567 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942786 SAMN22904083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344351/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942787 SAMN22904081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344356/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.32 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.710 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942788 SAMN22904080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344357/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942789 SAMN22903055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344360/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.84 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.020 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942790 SAMN22904079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344361/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942791 SAMN22904078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344362/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942792 SAMN22904077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344363/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.465 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942793 SAMN22904076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344364/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.362 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942794 SAMN22904075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344365/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.107 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942795 SAMN22903054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344369/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942796 SAMN22904074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.600 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942797 SAMN22904073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.908 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942798 SAMN22905175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942799 SAMN22905174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.944 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942800 SAMN22905173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344374/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.337 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942801 SAMN22903053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344379/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.322 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942802 SAMN22907541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344378/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942803 SAMN22905171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.354 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942804 SAMN22905172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942805 SAMN22907457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344383/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.755 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942806 SAMN22907197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.562 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942807 SAMN22907540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344382/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942808 SAMN22905891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0344381/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.239 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.326 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942809 SAMN22907539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344385/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.080 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942810 SAMN22907456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.313 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942811 SAMN22907455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344388/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.156 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942812 SAMN22902265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0344390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.678 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942813 SAMN22907454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344389/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.963 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.874 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942814 SAMN22906207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344829/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.410 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942815 SAMN22906710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344832/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.593 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942816 SAMN22906711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942817 SAMN22906206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344833/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942818 SAMN22900923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344837/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.471 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942819 SAMN22900924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344836/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942820 SAMN22900925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344835/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942821 SAMN22907196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344838/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.557 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942822 SAMN22907195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344839/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.683 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.882 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942823 SAMN22907194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344840/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.855 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942824 SAMN22907193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344841/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.265 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942825 SAMN22907192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344843/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.920 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942826 SAMN22903349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0344845/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.122 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942827 SAMN22907191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344844/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.434 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942828 SAMN22902234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344849/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.509 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942829 SAMN22901424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.005 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942830 SAMN22908177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344853/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942831 SAMN22903348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0344850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.319 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942832 SAMN22908176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344854/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942833 SAMN22907923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0344860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.824 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942834 SAMN22908175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942835 SAMN22908725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344861/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.940 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942836 SAMN22906848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0344865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942837 SAMN22907190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344870/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942838 SAMN22908724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.221 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942839 SAMN22907189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344871/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942840 SAMN22907188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.700 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942841 SAMN22908669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344875/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942842 SAMN22906931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344880/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.707 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942843 SAMN22907187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0344881/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.185 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942844 SAMN22908668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344877/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942845 SAMN22908723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942846 SAMN22905501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348862/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942847 SAMN22905500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942848 SAMN22905499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942849 SAMN22905498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942850 SAMN22905495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348877/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942851 SAMN22905496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348876/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942852 SAMN22905497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348869/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942853 SAMN22905494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942854 SAMN22905493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942855 SAMN22905492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942856 SAMN22908706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0348884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942857 SAMN22906769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348885/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942858 SAMN22907068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348887/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942859 SAMN22905916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348888/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.402 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942860 SAMN22904494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348886/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942861 SAMN22904839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348892/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.905 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942862 SAMN22904837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348894/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.071 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942863 SAMN22904838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348893/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.346 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942864 SAMN22904836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0348896/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.777 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942865 SAMN22902119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0348899/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.788 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942866 SAMN22901884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348901/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942867 SAMN22901883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348902/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.077 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942868 SAMN22901881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348906/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.296 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942869 SAMN22901882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348903/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942870 SAMN22901879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348909/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.808 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942871 SAMN22901878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348911/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.129 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942872 SAMN22908433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942873 SAMN22901880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0348907/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.727 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942874 SAMN22908432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.683 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.155 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942875 SAMN22907067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942876 SAMN22905491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348920/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.853 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942877 SAMN22901122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0348922/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.559 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942878 SAMN22904475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349014/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.796 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942879 SAMN22904474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.657 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942880 SAMN22904473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942881 SAMN22907047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349019/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942882 SAMN22907046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.230 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942883 SAMN22907045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.540 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942884 SAMN22907042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.204 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942885 SAMN22907044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.585 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942886 SAMN22907043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349024/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.989 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942887 SAMN22902112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349028/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942888 SAMN22908419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.321 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.968 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942889 SAMN22904472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.604 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942890 SAMN22904471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349030/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.977 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942891 SAMN22904469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349032/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942892 SAMN22904470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.833 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942893 SAMN22904468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349033/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.637 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942894 SAMN22904467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.453 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942895 SAMN22904465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.998 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942896 SAMN22904466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.330 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942897 SAMN22904464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942898 SAMN22904463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.031 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942899 SAMN22904462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.003 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942900 SAMN22904461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942901 SAMN22904459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.280 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942902 SAMN22904460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942903 SAMN22907515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942904 SAMN22902111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.434 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.587 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942905 SAMN22902110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349052/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.306 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942906 SAMN22902109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349053/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.841 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942907 SAMN22907848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349057/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.564 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942908 SAMN22907849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942909 SAMN22907847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349058/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942910 SAMN22901871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349302/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942911 SAMN22901869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349306/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942912 SAMN22901868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349307/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.569 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942913 SAMN22901870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349303/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.832 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942914 SAMN22901867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349314/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.791 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942915 SAMN22901866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349315/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.745 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942916 SAMN22901865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942917 SAMN22902096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349317/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.370 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942918 SAMN22906071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349320/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.610 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942919 SAMN22908705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0349321/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942920 SAMN22902095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349318/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.393 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942922 SAMN22902093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349324/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.599 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942921 SAMN22902094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349323/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.038 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942923 SAMN22901102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349326/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942924 SAMN22901101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349327/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942925 SAMN22905911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0349328/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.617 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942926 SAMN22900728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0349330/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.571 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942927 SAMN22901100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349329/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.412 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942928 SAMN22907839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349332/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.820 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942929 SAMN22907838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349333/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942930 SAMN22902092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349331/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.514 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942931 SAMN22901864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349335/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.117 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942932 SAMN22906164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0349334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.051 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942933 SAMN22901863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349337/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942934 SAMN22901862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349339/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.075 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942935 SAMN22902829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0349343/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942936 SAMN22907837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349345/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.816 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942937 SAMN22907835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.783 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942938 SAMN22907836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349346/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.510 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942939 SAMN22907834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349348/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942940 SAMN22901861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349350/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.176 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942941 SAMN22907833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349349/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.952 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942942 SAMN22902087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349545/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.102 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942943 SAMN22901843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.031 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942944 SAMN22901842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349549/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.373 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942945 SAMN22902086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.072 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942946 SAMN22903526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0349551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942947 SAMN22901841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349550/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.068 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.120 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942948 SAMN22900727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0349552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.899 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942949 SAMN22900726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0349553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942950 SAMN22907823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.176 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942951 SAMN22907824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.234 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942952 SAMN22907822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349556/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.127 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942953 SAMN22906061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.299 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942954 SAMN22903239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942955 SAMN22903238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942956 SAMN22903237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942957 SAMN22907662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342725/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942958 SAMN22903236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349569/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942959 SAMN22908740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0342728/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942960 SAMN22906464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342726/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.272 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942961 SAMN22906463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342727/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.299 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942962 SAMN22906740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942963 SAMN22906462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.688 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942964 SAMN22906739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.721 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942965 SAMN22907467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0342986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942966 SAMN22907466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0342987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.036 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942967 SAMN22907546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0342988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942968 SAMN22903185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342990/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.769 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942969 SAMN22908739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0342989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.254 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942970 SAMN22903183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942971 SAMN22903184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0342992/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.932 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942972 SAMN22906738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0342996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.595 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942973 SAMN22907465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0342994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.285 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942974 SAMN22904029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.819 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942975 SAMN22906940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0343003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.408 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942976 SAMN22904030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0342998/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942977 SAMN22906737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.014 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942978 SAMN22906734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942979 SAMN22906735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.152 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.891 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942980 SAMN22906736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942981 SAMN22901629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.558 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942982 SAMN22905733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.858 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942983 SAMN22901628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343013/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942984 SAMN22905732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343015/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.786 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942985 SAMN22901627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.213 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.430 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942986 SAMN22901626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.043 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942987 SAMN22901625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.564 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942988 SAMN22906452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942989 SAMN22905731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343029/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.360 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942990 SAMN22905730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343030/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942991 SAMN22905729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343031/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.909 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942992 SAMN22900977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343083/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942993 SAMN22905477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343034/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.680 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942994 SAMN22905728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0343032/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942995 SAMN22900976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942996 SAMN22905476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343035/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942997 SAMN22900975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942998 SAMN22900974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.914 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10942999 SAMN22906220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0343088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.530 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943000 SAMN22904026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.842 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943001 SAMN22900973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343095/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.208 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943002 SAMN22900971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343097/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.187 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943003 SAMN22900970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343098/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.933 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943004 SAMN22900972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343096/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943005 SAMN22900969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343099/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.886 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943006 SAMN22907464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343100/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.661 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943007 SAMN22907463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343102/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.937 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943008 SAMN22907545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0343103/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.437 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943009 SAMN22901622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343104/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.745 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943010 SAMN22903182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343105/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943011 SAMN22900967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343109/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943012 SAMN22900968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343108/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943013 SAMN22900966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343110/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.804 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943014 SAMN22904025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343112/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943015 SAMN22900965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343111/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.410 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943016 SAMN22906730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343113/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.921 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943017 SAMN22904024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343114/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943018 SAMN22904023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343115/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943019 SAMN22907462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0343116/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.770 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943020 SAMN22900964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343117/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.278 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943021 SAMN22906729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343119/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.942 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943022 SAMN22903181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343121/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.725 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943023 SAMN22903180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343122/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943024 SAMN22906728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343120/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943025 SAMN22903179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343124/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.488 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943026 SAMN22907544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0343125/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.690 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943027 SAMN22904190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.359 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943028 SAMN22904188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343990/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943029 SAMN22903104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.19 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.319 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943030 SAMN22904189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.954 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943031 SAMN22904187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343992/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.406 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.569 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943032 SAMN22904186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.401 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943033 SAMN22903103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.907 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943034 SAMN22905234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943035 SAMN22904184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344004/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943036 SAMN22904185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.921 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943037 SAMN22904183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.040 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943038 SAMN22905233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.508 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943039 SAMN22905232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.298 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943040 SAMN22905231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.152 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.419 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943041 SAMN22905230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.924 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943042 SAMN22904181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.666 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943043 SAMN22904182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.047 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943044 SAMN22904180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.728 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943045 SAMN22904179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344013/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.903 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943046 SAMN22903102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344014/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.589 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943047 SAMN22904178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344016/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943048 SAMN22905228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344018/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.450 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943049 SAMN22905229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.902 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943050 SAMN22904176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943051 SAMN22904175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.008 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.235 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943052 SAMN22904177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344019/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.763 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943053 SAMN22903101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344023/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943054 SAMN22904174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344022/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.493 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943055 SAMN22904173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344025/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.152 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943056 SAMN22903100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344026/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.278 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943057 SAMN22903098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344028/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943058 SAMN22905123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344555/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943059 SAMN22903099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344027/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.706 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943060 SAMN22905122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344557/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.879 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.364 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943061 SAMN22903041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344558/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.748 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943062 SAMN22905121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344559/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943063 SAMN22905120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344560/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.830 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943064 SAMN22905119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344561/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.550 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943065 SAMN22907524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344562/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.757 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943066 SAMN22907523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344564/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943067 SAMN22907522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344565/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943068 SAMN22907520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344567/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943069 SAMN22907521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344566/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.383 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943070 SAMN22907519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344568/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.626 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943071 SAMN22908694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344570/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.257 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943072 SAMN22908693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344571/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.785 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.746 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943073 SAMN22908692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344572/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.89 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.203 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943074 SAMN22908691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344575/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.123 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943075 SAMN22908690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344576/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.952 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943076 SAMN22908688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344578/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943077 SAMN22908689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344577/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.842 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943078 SAMN22908687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344579/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.257 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943079 SAMN22904713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.999 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943080 SAMN22904712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344590/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.640 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943081 SAMN22906218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344597/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943082 SAMN22904711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0344592/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.645 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.955 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943083 SAMN22900956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.700 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943084 SAMN22900954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943085 SAMN22900955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.780 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943086 SAMN22906217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.957 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943087 SAMN22906216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943088 SAMN22906215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943089 SAMN22906214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943090 SAMN22906213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.77 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.938 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943091 SAMN22906936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.177 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.492 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943092 SAMN22906212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943093 SAMN22906727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.564 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943094 SAMN22906726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943095 SAMN22906725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.409 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943096 SAMN22906211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0344621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943097 SAMN22900953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344622/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.407 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943098 SAMN22900952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943099 SAMN22900951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344624/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.922 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943100 SAMN22900950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344625/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.283 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943101 SAMN22900948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943102 SAMN22900949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344626/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943103 SAMN22900947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943104 SAMN22900946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344629/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943105 SAMN22900945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344630/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.508 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.185 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943106 SAMN22900944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344631/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943107 SAMN22900942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344633/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.263 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943108 SAMN22900943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0344632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.858 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943109 SAMN22906724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344634/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943110 SAMN22906723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0344635/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.581 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943111 SAMN22906935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0344640/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.959 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943112 SAMN22901427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344642/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.003 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.697 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943113 SAMN22903350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0344647/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.384 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943114 SAMN22901426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344645/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943115 SAMN22903351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0344644/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943116 SAMN22901425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0344646/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.76 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.864 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943117 SAMN22908186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943118 SAMN22908185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943119 SAMN22908184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344653/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.187 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943120 SAMN22908183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.415 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943121 SAMN22908182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.074 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943122 SAMN22908181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344657/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.585 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.163 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943123 SAMN22908180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943124 SAMN22908179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.390 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943125 SAMN22908178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0344663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.073 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943126 SAMN22908686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.423 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943127 SAMN22905110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943128 SAMN22908685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943129 SAMN22908684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943130 SAMN22905109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943131 SAMN22905108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943132 SAMN22905106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344677/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.599 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943133 SAMN22905107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943134 SAMN22902246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.194 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943135 SAMN22908683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.145 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943136 SAMN22905105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.715 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943137 SAMN22905104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344681/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.455 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.025 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943138 SAMN22905102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.794 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943139 SAMN22905103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344683/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943140 SAMN22905101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344685/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943141 SAMN22901226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344686/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.585 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.614 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943142 SAMN22906142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0344687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943143 SAMN22902245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344688/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.402 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.809 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943144 SAMN22908682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344692/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.133 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943145 SAMN22905100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943146 SAMN22905099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0344695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943147 SAMN22905549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0344696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.941 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943148 SAMN22902243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344698/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.094 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943149 SAMN22902244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344697/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943150 SAMN22901225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943151 SAMN22908727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0344701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.253 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943152 SAMN22902242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0344702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943153 SAMN22908681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943154 SAMN22901396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.472 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943155 SAMN22908680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0344704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.694 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.601 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943156 SAMN22901395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345931/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.130 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943157 SAMN22901394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.231 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943158 SAMN22901393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345933/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.014 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943159 SAMN22907268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.053 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943160 SAMN22901392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345934/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.720 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943161 SAMN22905874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345938/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.655 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943162 SAMN22903331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345937/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.93 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943163 SAMN22905873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345939/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.808 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943164 SAMN22905872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345940/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.423 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943165 SAMN22907141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.680 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943166 SAMN22905871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0345941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.404 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943167 SAMN22907140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.869 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943168 SAMN22901191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.686 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943169 SAMN22907139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0345945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.513 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943170 SAMN22901390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943171 SAMN22901391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.081 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943172 SAMN22908771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0345948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.207 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943173 SAMN22907267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943174 SAMN22907266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.609 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 11.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.690 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943175 SAMN22907265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943176 SAMN22901389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943177 SAMN22903330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943178 SAMN22901190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943179 SAMN22903329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0345956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.830 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943180 SAMN22907264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943181 SAMN22907263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.863 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943182 SAMN22907262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.624 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943183 SAMN22901388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.002 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.046 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943184 SAMN22907261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.565 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943185 SAMN22907260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0345962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.693 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943186 SAMN22901387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0345963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943187 SAMN22908123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346733/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.462 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943188 SAMN22908121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346735/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.47 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.808 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943189 SAMN22908120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346736/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.975 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943190 SAMN22908122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.070 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943191 SAMN22908119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346737/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.049 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943192 SAMN22908118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943193 SAMN22908117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.256 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943194 SAMN22908116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346740/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.485 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943195 SAMN22908115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346741/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.02 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.180 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943196 SAMN22908114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346742/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.992 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943197 SAMN22908112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346744/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.686 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943198 SAMN22908113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.318 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943199 SAMN22908111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346746/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.319 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943200 SAMN22908110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346747/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.677 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943201 SAMN22908109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346748/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.985 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943202 SAMN22908107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346752/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.834 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943203 SAMN22908108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346751/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.757 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943204 SAMN22908106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346753/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943205 SAMN22908105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.567 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943206 SAMN22908104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0346755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.131 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943207 SAMN22901328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943208 SAMN22901326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346758/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943209 SAMN22907110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943210 SAMN22901327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.486 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943211 SAMN22901325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346762/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943212 SAMN22901324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346763/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.091 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943213 SAMN22901323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.770 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943214 SAMN22901321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346766/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.853 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943215 SAMN22901322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.83 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.745 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943216 SAMN22901320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346767/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943217 SAMN22901319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346768/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.423 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943218 SAMN22907106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346933/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.954 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943219 SAMN22901318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0346770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.380 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943220 SAMN22907104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346935/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.640 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943221 SAMN22907105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346934/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.353 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943222 SAMN22905988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943223 SAMN22907877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.624 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943224 SAMN22902166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.169 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943225 SAMN22900732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0346942/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943226 SAMN22906103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943227 SAMN22907876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.429 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943228 SAMN22906102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.790 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943229 SAMN22906101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.925 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943230 SAMN22902164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.586 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943231 SAMN22902165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.322 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943232 SAMN22902163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.509 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943233 SAMN22904954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943234 SAMN22904953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.851 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943235 SAMN22904952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.678 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.232 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943236 SAMN22904951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943237 SAMN22904950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.601 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943238 SAMN22904949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.406 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943239 SAMN22901936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.753 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943240 SAMN22907103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346966/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.471 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943241 SAMN22901167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.586 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943242 SAMN22908524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346972/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.205 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943243 SAMN22905987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346970/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943244 SAMN22908523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346982/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943245 SAMN22908521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.884 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943246 SAMN22908522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.621 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943247 SAMN22908520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.491 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943248 SAMN22908519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.718 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943249 SAMN22908518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.473 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943250 SAMN22907875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.114 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943251 SAMN22906784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348705/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943252 SAMN22906785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943253 SAMN22905940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943254 SAMN22905939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943255 SAMN22905938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348711/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943256 SAMN22905937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943257 SAMN22905935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943258 SAMN22905936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348717/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943259 SAMN22907363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348729/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943260 SAMN22907361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943261 SAMN22907362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348730/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943262 SAMN22906783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348736/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943263 SAMN22906782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348738/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943264 SAMN22906780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348743/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943265 SAMN22906781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0348739/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943266 SAMN22905934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348752/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943267 SAMN22905933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348753/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943268 SAMN22905932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348754/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943269 SAMN22905931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0348756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943270 SAMN22905505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943271 SAMN22907516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0348765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943272 SAMN22907517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0348764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943273 SAMN22907360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348768/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943274 SAMN22905504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943275 SAMN22907358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348775/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943276 SAMN22907359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943277 SAMN22907357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348777/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943278 SAMN22907356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348778/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943279 SAMN22907355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943280 SAMN22907354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0348781/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943281 SAMN22907069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348784/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943282 SAMN22905503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0348786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943283 SAMN22906073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349208/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.333 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943284 SAMN22901111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349209/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 13.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943285 SAMN22901110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943286 SAMN22907036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349211/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.165 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943287 SAMN22907035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.945 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.685 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943288 SAMN22901109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349213/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943289 SAMN22902105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.050 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943290 SAMN22902104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.441 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943291 SAMN22902106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.626 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943292 SAMN22902103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943293 SAMN22902102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349224/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.018 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943294 SAMN22906767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0349225/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943295 SAMN22907034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349227/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.338 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943296 SAMN22907033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349228/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.865 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.292 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943297 SAMN22908418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349231/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.983 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943298 SAMN22907032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349229/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943299 SAMN22905913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0349230/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.92 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.560 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943300 SAMN22908417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349232/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.366 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943301 SAMN22908416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349233/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.701 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943302 SAMN22904457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349237/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943303 SAMN22907031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349239/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943304 SAMN22904456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349241/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943305 SAMN22904455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943306 SAMN22902101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943307 SAMN22904454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.975 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943308 SAMN22908415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349247/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.614 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943309 SAMN22902099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.368 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.637 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943310 SAMN22902100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349249/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.026 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943311 SAMN22906766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0349254/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.223 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943312 SAMN22908414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943313 SAMN22908413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.811 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943314 SAMN22907206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349924/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943315 SAMN22907205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349926/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.564 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943316 SAMN22908412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349257/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.514 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943317 SAMN22903200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.431 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943318 SAMN22908071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943319 SAMN22908070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0349943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.460 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943320 SAMN22902260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0349946/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943321 SAMN22905888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0349947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.170 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943322 SAMN22907439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.834 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943323 SAMN22907514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.129 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943324 SAMN22902259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0349949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.291 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943325 SAMN22907513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.700 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943326 SAMN22907437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943327 SAMN22907438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.864 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943328 SAMN22902258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0349954/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.757 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943329 SAMN22907512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.288 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943330 SAMN22907511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.079 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943331 SAMN22907510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.463 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943332 SAMN22907436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.092 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943333 SAMN22907508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349961/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.232 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943334 SAMN22907509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.248 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.693 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943335 SAMN22907507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349962/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943336 SAMN22907506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943337 SAMN22907504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349965/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943338 SAMN22907505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349964/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943339 SAMN22907503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349966/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.333 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943340 SAMN22907435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349967/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.952 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943341 SAMN22907434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349968/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.022 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943342 SAMN22907433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349969/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943343 SAMN22906650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349973/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.147 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943344 SAMN22907432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349971/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.894 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943345 SAMN22906651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349972/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.261 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943346 SAMN22906857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349974/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.789 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943347 SAMN22903842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943348 SAMN22903840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350374/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943349 SAMN22903843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943350 SAMN22903841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350373/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.616 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.600 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943351 SAMN22903839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943352 SAMN22903837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943353 SAMN22903838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943354 SAMN22906633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.492 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943355 SAMN22905908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0350379/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.236 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943356 SAMN22905909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0350378/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.647 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.405 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943357 SAMN22903836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350383/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943358 SAMN22906632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.570 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943359 SAMN22906631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350385/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.644 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943360 SAMN22907492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350382/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943361 SAMN22906630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.376 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943362 SAMN22906629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350387/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943363 SAMN22907424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.545 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943364 SAMN22902255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0350389/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.741 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943365 SAMN22907423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350391/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943366 SAMN22906628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350388/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.012 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.542 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943367 SAMN22907421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.958 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943368 SAMN22907422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350392/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.111 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943369 SAMN22908734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350397/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943370 SAMN22907420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350399/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.305 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.302 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943371 SAMN22907490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.675 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943372 SAMN22905884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0350396/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.281 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943373 SAMN22907491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.247 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943374 SAMN22906627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.749 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943375 SAMN22908733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0350404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.292 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943376 SAMN22907489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.612 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943377 SAMN22906626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350405/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943378 SAMN22906625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943379 SAMN22902976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350651/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943380 SAMN22906256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350650/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.89 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943381 SAMN22902975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350652/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.245 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943382 SAMN22902973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350654/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.181 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943383 SAMN22902974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350653/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.268 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943384 SAMN22902972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350655/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.146 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943385 SAMN22902971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350656/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.954 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.815 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943386 SAMN22902970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350657/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.465 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943387 SAMN22902968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350660/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.644 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943388 SAMN22902969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350658/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.366 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943389 SAMN22906255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350659/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943390 SAMN22902967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350661/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.183 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943391 SAMN22902965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.915 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943392 SAMN22902966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350662/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943393 SAMN22902964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350664/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.244 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943394 SAMN22902963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.406 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943395 SAMN22902961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350667/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.940 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943396 SAMN22902960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.763 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943397 SAMN22902962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943398 SAMN22906254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350670/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943399 SAMN22902959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943400 SAMN22902958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943401 SAMN22902956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350673/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943402 SAMN22902955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.810 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943403 SAMN22902954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943404 SAMN22902957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.609 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943405 SAMN22906253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0350676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943406 SAMN22902953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350677/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943407 SAMN22902952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.984 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943408 SAMN22902950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350680/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.165 lineage/clade name AY.4.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943409 SAMN22902951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.683 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943410 SAMN22907983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352914/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.622 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943411 SAMN22907982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352916/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943412 SAMN22902949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350681/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.024 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943413 SAMN22907981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352917/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.581 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.251 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943414 SAMN22907979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352919/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.991 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943415 SAMN22907978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352923/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.645 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943416 SAMN22907980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352918/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943417 SAMN22907977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352925/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.685 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943418 SAMN22907976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352927/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.070 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943419 SAMN22907975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352930/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.018 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943420 SAMN22907974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352932/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.312 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943421 SAMN22907973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352933/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.365 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943422 SAMN22907972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352936/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.823 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943423 SAMN22907971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352937/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.048 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943424 SAMN22907970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352939/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.889 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943425 SAMN22907968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352943/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943426 SAMN22907969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352941/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943427 SAMN22907966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352945/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.589 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943428 SAMN22907967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352944/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.831 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943429 SAMN22907965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352947/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.711 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943430 SAMN22907964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352948/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943431 SAMN22907963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352949/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.057 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943432 SAMN22907962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352950/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.510 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943433 SAMN22907960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352952/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943434 SAMN22907961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352951/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.007 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943435 SAMN22907958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352955/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.470 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943436 SAMN22907959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352953/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.486 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943437 SAMN22907957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352956/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943438 SAMN22907954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352959/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.145 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943439 SAMN22907953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352960/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.402 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943440 SAMN22907956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352957/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943441 SAMN22907955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352958/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.615 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943442 SAMN22907952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0352963/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943443 SAMN22908760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348255/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943444 SAMN22908761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348253/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943445 SAMN22905854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0348257/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943446 SAMN22905852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0348259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943447 SAMN22905855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0348256/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943448 SAMN22901295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0348261/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943449 SAMN22905853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0348258/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943450 SAMN22901294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0348263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943451 SAMN22907235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0348265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943452 SAMN22907234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0348266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943453 SAMN22901293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0348274/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943454 SAMN22908759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348275/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943455 SAMN22907233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0348271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943456 SAMN22908757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348278/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943457 SAMN22908756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348279/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943458 SAMN22908758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348276/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943459 SAMN22908754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348282/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943460 SAMN22908753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348284/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943461 SAMN22908755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348281/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943462 SAMN22908752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348285/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943463 SAMN22908751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0348286/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943464 SAMN22904487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348972/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.992 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943465 SAMN22904485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348974/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.739 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943466 SAMN22904483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.184 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943467 SAMN22904486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348973/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.612 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.527 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943468 SAMN22907061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.246 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.804 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.442 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943469 SAMN22907060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.504 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.784 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943470 SAMN22904484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348975/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.414 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943471 SAMN22908422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.317 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943472 SAMN22908423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.879 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943473 SAMN22908421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.172 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.787 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943474 SAMN22901292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0348991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.038 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943475 SAMN22907059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348992/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.562 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943476 SAMN22907056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.418 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943477 SAMN22904482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.922 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943478 SAMN22907057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.081 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943479 SAMN22907058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943480 SAMN22904481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.792 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943481 SAMN22907055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348998/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943482 SAMN22907054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.461 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943483 SAMN22907053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349000/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.315 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943484 SAMN22907052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349001/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943485 SAMN22907049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349004/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.121 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943486 SAMN22907048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.425 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943487 SAMN22904480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943488 SAMN22904479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349008/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943489 SAMN22907050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.090 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943490 SAMN22907051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.506 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943491 SAMN22902113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349009/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.997 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943492 SAMN22904478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349011/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.087 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943493 SAMN22904477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.455 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943494 SAMN22908420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.751 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943495 SAMN22904476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349013/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943496 SAMN22906875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349152/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943497 SAMN22903012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.245 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943498 SAMN22908744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0349158/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.719 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943499 SAMN22903011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.738 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.648 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943500 SAMN22901116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.919 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943501 SAMN22908743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0349159/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.071 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.134 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943502 SAMN22907037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349161/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943503 SAMN22901288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.147 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943504 SAMN22903244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349164/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.839 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943505 SAMN22906874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349167/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.050 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943506 SAMN22906872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.822 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943507 SAMN22906873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943508 SAMN22906871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0349170/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.058 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943509 SAMN22908742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0349162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943510 SAMN22901115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349172/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.943 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943511 SAMN22901114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.904 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943512 SAMN22907346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0349179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.991 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943513 SAMN22902107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943514 SAMN22904835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.994 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.398 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943515 SAMN22901113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.995 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.060 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943516 SAMN22907345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0349196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.377 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943517 SAMN22907344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0349197/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.872 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943518 SAMN22907846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349198/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.637 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943519 SAMN22907844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349200/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943520 SAMN22907845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349199/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.720 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943521 SAMN22907843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349201/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.178 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943522 SAMN22907841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.685 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943523 SAMN22905848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.195 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943524 SAMN22907842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.794 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943525 SAMN22901112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349206/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943526 SAMN22905914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0349205/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943527 SAMN22905847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0349207/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.295 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943528 SAMN22908305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351847/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.036 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943529 SAMN22908304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351848/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.363 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943530 SAMN22904444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0351850/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.743 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943531 SAMN22908068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0351851/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.127 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943532 SAMN22908701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0351852/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.976 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943533 SAMN22907807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0351854/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943534 SAMN22901062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351855/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.538 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943535 SAMN22908066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0351858/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.212 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943536 SAMN22908067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0351857/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943537 SAMN22908065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0351859/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.569 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943538 SAMN22906057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0351860/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943539 SAMN22904815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351863/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943540 SAMN22904814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351864/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943541 SAMN22904812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351866/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943542 SAMN22904811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351872/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.684 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943543 SAMN22904813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351865/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.269 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943544 SAMN22908303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0351873/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.239 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943545 SAMN22901837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351875/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.075 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943546 SAMN22901836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351879/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.609 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.110 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943547 SAMN22901835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351880/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.513 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943548 SAMN22904809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351882/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.684 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943549 SAMN22904810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351881/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.282 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943550 SAMN22904807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351884/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.017 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943551 SAMN22904808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0351883/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.097 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.820 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943552 SAMN22901834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351983/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.979 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943553 SAMN22901061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351985/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943554 SAMN22901833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0351984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.952 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943555 SAMN22901060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0351986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.858 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943556 SAMN22907002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351987/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.184 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943557 SAMN22907001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.166 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.567 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943558 SAMN22907000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943559 SAMN22904070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.392 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943560 SAMN22904071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.913 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943561 SAMN22906999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0351991/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.001 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943562 SAMN22905147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344518/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.028 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943563 SAMN22905146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943564 SAMN22905145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344521/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.475 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943565 SAMN22904069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344522/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943566 SAMN22905144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943567 SAMN22905143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.050 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943568 SAMN22905142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344525/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.691 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943569 SAMN22905141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344526/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.673 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943570 SAMN22904068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344529/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943571 SAMN22905140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344527/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.488 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943572 SAMN22904067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.537 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943573 SAMN22904066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.208 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943574 SAMN22905138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344533/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.012 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943575 SAMN22905139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943576 SAMN22905137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.259 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943577 SAMN22905136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.874 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943578 SAMN22905135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344536/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.093 lineage/clade name AY.46 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943579 SAMN22905134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943580 SAMN22905133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.918 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943581 SAMN22905132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344539/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.276 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.628 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.575 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943582 SAMN22905131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344540/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.428 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943583 SAMN22905130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344542/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943584 SAMN22905129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344543/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943585 SAMN22905128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344544/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.089 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943586 SAMN22904065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0344546/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.858 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.276 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943587 SAMN22903042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0344548/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943588 SAMN22905127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344551/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.050 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943589 SAMN22905126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344552/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943590 SAMN22905124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344554/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943591 SAMN22905125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344553/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.230 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943592 SAMN22902137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347589/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943593 SAMN22902136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347590/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.033 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943594 SAMN22904530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347591/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943595 SAMN22902134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347597/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943596 SAMN22902135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347593/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.870 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943597 SAMN22904529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347596/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.726 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943598 SAMN22903593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0347598/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943599 SAMN22903577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0347599/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943600 SAMN22903560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0347600/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.933 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943601 SAMN22904528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347602/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943602 SAMN22904527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347603/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.336 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943603 SAMN22904525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347605/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943605 SAMN22907083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347607/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943606 SAMN22904524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347606/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.205 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943607 SAMN22907082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347608/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943608 SAMN22907081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347609/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.952 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943609 SAMN22902133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347610/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.57 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943610 SAMN22906079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0347612/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943611 SAMN22902130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347615/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.906 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.672 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943612 SAMN22902131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347614/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943613 SAMN22902132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347613/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943614 SAMN22903966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347618/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943615 SAMN22903965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347619/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.644 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943616 SAMN22906907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0347617/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943617 SAMN22903964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347620/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.319 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.072 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943618 SAMN22906192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0347623/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.534 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943619 SAMN22903963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347621/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.405 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943620 SAMN22900870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347628/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.588 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943621 SAMN22900871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0347627/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.668 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943622 SAMN22903962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0347631/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.572 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943623 SAMN22901178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.534 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943624 SAMN22903031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0347632/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943604 SAMN22904526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347604/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.889 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943625 SAMN22904976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943626 SAMN22905993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346443/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943627 SAMN22904975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943628 SAMN22904974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346446/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.448 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943629 SAMN22904972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346448/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943630 SAMN22904971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346449/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.284 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943631 SAMN22904613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943632 SAMN22904973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943633 SAMN22901950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.894 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.666 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943634 SAMN22901951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.920 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943635 SAMN22901949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.003 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943636 SAMN22901948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346455/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943637 SAMN22908548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.396 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943638 SAMN22901947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943639 SAMN22906115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346462/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.636 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943640 SAMN22902169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943641 SAMN22908547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346459/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.720 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943642 SAMN22907885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0346463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943643 SAMN22902168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346465/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943644 SAMN22905992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0346466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.136 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943645 SAMN22904612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.101 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.177 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943646 SAMN22907115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346475/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943647 SAMN22907114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346476/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.924 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943648 SAMN22907113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346477/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.596 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943649 SAMN22907112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346479/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.802 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943650 SAMN22904611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346486/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.800 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943651 SAMN22903993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.219 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943652 SAMN22900921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.280 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943653 SAMN22903992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346493/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.189 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943654 SAMN22900920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0346492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943655 SAMN22903991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0346494/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943656 SAMN22908468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943657 SAMN22907080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0348043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.937 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943658 SAMN22904520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.218 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943659 SAMN22903281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0348047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.202 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943660 SAMN22908467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348046/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943661 SAMN22904519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.428 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943662 SAMN22904518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348049/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.089 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.530 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943663 SAMN22904516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.901 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943664 SAMN22904517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348050/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943665 SAMN22907851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0348059/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943666 SAMN22908466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.355 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943667 SAMN22908465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943668 SAMN22908464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348063/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943669 SAMN22908463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943670 SAMN22904513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348069/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.838 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943671 SAMN22904515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348065/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.875 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943672 SAMN22908462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348073/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.664 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943673 SAMN22904514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.115 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943674 SAMN22908460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.073 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.142 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943675 SAMN22908461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943676 SAMN22908459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348077/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943677 SAMN22908457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.417 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943678 SAMN22908458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348078/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943679 SAMN22904512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348082/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.302 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943680 SAMN22908456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348084/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943681 SAMN22908455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348085/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.107 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943682 SAMN22904511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348086/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943683 SAMN22908453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348088/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.699 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943684 SAMN22908454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348087/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943685 SAMN22908452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348089/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.377 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943686 SAMN22908451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0348090/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.684 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943687 SAMN22901280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349665/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943688 SAMN22904510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0348091/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.661 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943689 SAMN22907225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349663/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.009 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943690 SAMN22907224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349666/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.994 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.129 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943691 SAMN22907223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0349668/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.735 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943692 SAMN22901279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349669/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.842 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943693 SAMN22901278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349671/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.699 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.103 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.580 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943694 SAMN22901277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349672/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.428 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943695 SAMN22903233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349674/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943696 SAMN22901276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349675/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.622 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943697 SAMN22901275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349676/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.727 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943698 SAMN22901274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349677/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943699 SAMN22901273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349678/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.342 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943700 SAMN22901272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349679/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.928 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943701 SAMN22901271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349683/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.796 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943702 SAMN22901270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349685/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.241 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.936 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943703 SAMN22907021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0349687/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.520 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943704 SAMN22901268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943705 SAMN22901269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349692/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943706 SAMN22901267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943707 SAMN22901266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349700/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943708 SAMN22901265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943709 SAMN22901264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943710 SAMN22901263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349703/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943711 SAMN22901262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349706/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943712 SAMN22901261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-16 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943713 SAMN22903232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943714 SAMN22903231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349716/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943715 SAMN22903230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349717/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943716 SAMN22903229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0349718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943717 SAMN22901260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943718 SAMN22901259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349733/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943719 SAMN22903007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349975/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943720 SAMN22901258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0349734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943721 SAMN22903006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349976/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.098 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.264 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943722 SAMN22908736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0349977/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943723 SAMN22906649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349979/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.741 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943724 SAMN22905887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0349978/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943725 SAMN22906648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349980/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943726 SAMN22906647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0349981/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.860 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943727 SAMN22907502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349984/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.717 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943728 SAMN22908735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0349986/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.497 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943729 SAMN22903005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349988/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.130 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943730 SAMN22900780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349990/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.804 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.727 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943731 SAMN22903004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0349994/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943732 SAMN22900781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0349989/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.552 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943733 SAMN22903855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0349993/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943734 SAMN22907501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349995/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.327 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943735 SAMN22907431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349996/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.740 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943736 SAMN22907430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0349997/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.126 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.342 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943737 SAMN22907500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349998/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.039 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943738 SAMN22907499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0349999/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.961 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943739 SAMN22903854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350003/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.141 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943740 SAMN22903853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0350004/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.560 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943741 SAMN22907498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350002/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943742 SAMN22905886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0350006/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943743 SAMN22900779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350005/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.159 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943744 SAMN22906646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0350010/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.782 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943745 SAMN22907429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0350012/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.080 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943746 SAMN22905885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0350007/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.523 lineage/clade name AY.41 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943747 SAMN22907497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0350014/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.236 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943748 SAMN22900778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350017/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.629 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943749 SAMN22903003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0350019/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.490 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943750 SAMN22900777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350020/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.924 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943751 SAMN22905783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342684/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943752 SAMN22906471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342688/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.068 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943753 SAMN22900776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0350021/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.237 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943754 SAMN22906470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342694/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943755 SAMN22901672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342695/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943756 SAMN22901673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342693/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943757 SAMN22905781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342699/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.699 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943758 SAMN22905782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342698/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943759 SAMN22901670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342701/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.670 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943760 SAMN22901671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342696/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.961 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943761 SAMN22902895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0342702/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943762 SAMN22901669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342704/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.244 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943763 SAMN22907663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0342705/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.911 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943764 SAMN22901668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342708/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.865 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943765 SAMN22906469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342707/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.840 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943766 SAMN22905780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342709/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943767 SAMN22901667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342711/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.350 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943768 SAMN22906468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342714/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943769 SAMN22901666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342713/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.318 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.488 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943770 SAMN22905779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342715/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943771 SAMN22901665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342716/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.620 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943772 SAMN22905778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0342718/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.913 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943773 SAMN22906466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342721/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.505 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943774 SAMN22906467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342720/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.530 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943775 SAMN22901664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342719/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.6 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943776 SAMN22901663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342722/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.986 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943777 SAMN22901662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0342723/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.770 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943778 SAMN22906465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0342724/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943779 SAMN22901442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351299/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.571 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943780 SAMN22905572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351306/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943781 SAMN22905571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351313/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.806 lineage/clade name AY.45 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943782 SAMN22905573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351305/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943783 SAMN22905570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351321/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.883 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943784 SAMN22900741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0351316/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943785 SAMN22905569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351334/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.542 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943786 SAMN22905568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351349/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943787 SAMN22902841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351347/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943788 SAMN22901441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351353/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943789 SAMN22905567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351354/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.129 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943790 SAMN22905566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351355/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.559 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943791 SAMN22902840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351366/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.165 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.523 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943792 SAMN22905565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0351369/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.139 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943793 SAMN22902839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0351377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.383 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943794 SAMN22901440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0351380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.720 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943795 SAMN22905475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343036/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.339 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943796 SAMN22905474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343037/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943797 SAMN22906604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343039/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943798 SAMN22906603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343040/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.448 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943799 SAMN22905471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343043/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.546 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943800 SAMN22905472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343042/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943801 SAMN22905470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343044/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.321 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943802 SAMN22905473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343041/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.181 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943803 SAMN22905469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343045/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943804 SAMN22905467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343051/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.092 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943805 SAMN22905468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343047/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.142 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943806 SAMN22906602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343048/2021 collected_by Laboratory Corporation of America collection_date 2021-10-15 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.408 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943807 SAMN22906599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343054/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943808 SAMN22906600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343053/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943809 SAMN22906598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343055/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.715 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.804 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943810 SAMN22906601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0343052/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943811 SAMN22905466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343056/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943812 SAMN22900983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343060/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.740 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943813 SAMN22905465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0343057/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943814 SAMN22904028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343061/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.145 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.132 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943815 SAMN22904027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0343062/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.634 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943816 SAMN22900982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343064/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943817 SAMN22900981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343066/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.850 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943818 SAMN22900980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343072/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943819 SAMN22906939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0343074/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.831 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943820 SAMN22901624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343073/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.462 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943821 SAMN22906733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343075/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.996 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943822 SAMN22906731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343077/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.453 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943823 SAMN22906732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0343076/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.899 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943824 SAMN22900979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343079/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943825 SAMN22901623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343081/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943826 SAMN22900978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0343080/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.57 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943827 SAMN22907775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343162/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943828 SAMN22907776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343161/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943829 SAMN22907774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343163/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.062 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.190 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943830 SAMN22906219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0343167/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943831 SAMN22907773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343164/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.464 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943832 SAMN22907772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343165/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.653 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943833 SAMN22907771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343166/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.216 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943834 SAMN22903176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343168/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943835 SAMN22907770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343169/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943836 SAMN22904313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343170/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.406 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.313 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943837 SAMN22904312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343171/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943838 SAMN22905402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343172/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.798 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943839 SAMN22907615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343176/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943840 SAMN22907769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343173/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.734 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943841 SAMN22907768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343174/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.917 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943842 SAMN22905401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343175/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.062 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943843 SAMN22907767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343177/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943844 SAMN22907614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343178/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.617 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943845 SAMN22905400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.863 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943846 SAMN22906451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343179/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.952 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943847 SAMN22907613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343186/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.869 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.546 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943848 SAMN22905399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343184/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.202 lineage/clade name AY.4.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943849 SAMN22904311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343187/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.146 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943850 SAMN22905398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343188/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.414 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943851 SAMN22907612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343189/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.535 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943852 SAMN22903175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343190/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943853 SAMN22904310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343193/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.558 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943854 SAMN22905397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343194/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.850 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943855 SAMN22903174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343191/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.945 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943856 SAMN22907611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343195/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.953 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943857 SAMN22907610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343196/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.020 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943858 SAMN22904195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343787/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943859 SAMN22907766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343197/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.779 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943860 SAMN22907744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343788/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.235 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943861 SAMN22903108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943862 SAMN22903109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943863 SAMN22907591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0343791/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.037 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943864 SAMN22905247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343794/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.710 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943865 SAMN22903107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0343792/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943866 SAMN22905246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343795/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.704 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943867 SAMN22904194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0343796/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.228 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943868 SAMN22905245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0343797/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.895 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943869 SAMN22907743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0343798/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.223 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943870 SAMN22904714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0343802/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.346 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943871 SAMN22906394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343803/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943872 SAMN22901572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343804/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943873 SAMN22906393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343811/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.793 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943874 SAMN22907654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343812/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.726 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943875 SAMN22902878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343809/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.501 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943876 SAMN22902877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0343814/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.188 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.251 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943877 SAMN22907653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343815/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.856 lineage/clade name AY.46.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943878 SAMN22906392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343816/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.591 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943879 SAMN22906391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343817/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.051 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943880 SAMN22906389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343820/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.421 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943881 SAMN22906388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343821/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943882 SAMN22906390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343818/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.180 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943883 SAMN22906387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0343822/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.126 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.941 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943884 SAMN22907652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343823/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.853 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943885 SAMN22907651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343825/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.722 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943886 SAMN22901571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343826/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943887 SAMN22907650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343827/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.819 lineage/clade name AY.42 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943888 SAMN22901569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343831/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.288 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943889 SAMN22901570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0343830/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.295 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943890 SAMN22907649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0343828/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943891 SAMN22907526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344434/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943892 SAMN22907527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344433/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943893 SAMN22902262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0344435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.635 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943894 SAMN22907442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.077 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943895 SAMN22902261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0344436/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943896 SAMN22907525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0344438/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.314 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943897 SAMN22906356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.320 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943898 SAMN22907441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0344441/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.440 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943899 SAMN22906355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344442/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943900 SAMN22907640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0344445/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.49 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.380 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943901 SAMN22906354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344444/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943902 SAMN22907639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0344446/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.991 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943903 SAMN22906353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344447/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943904 SAMN22906352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344448/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943905 SAMN22906351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344449/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.204 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943906 SAMN22906350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344450/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943907 SAMN22906349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344452/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943908 SAMN22902874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0344453/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.62 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.466 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943909 SAMN22906348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344454/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.042 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943910 SAMN22906347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344458/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943911 SAMN22907638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0344457/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.317 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943912 SAMN22907637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0344460/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.252 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943913 SAMN22906346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344461/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.581 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943914 SAMN22906344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344464/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943915 SAMN22906345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344463/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.686 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943916 SAMN22906343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344466/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943917 SAMN22906342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344467/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.537 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943918 SAMN22906341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344468/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943919 SAMN22906340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0344469/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943920 SAMN22907636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0344470/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.452 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943921 SAMN22901227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0344471/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.824 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.149 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943922 SAMN22908634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345182/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.630 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943923 SAMN22905075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345202/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.838 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943924 SAMN22905170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0344474/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943925 SAMN22907919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345183/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.661 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943926 SAMN22905074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345203/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943927 SAMN22905073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345204/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.410 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943928 SAMN22905072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345206/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943929 SAMN22908633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345212/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.458 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943930 SAMN22905071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345210/2021 collected_by Laboratory Corporation of America collection_date 2021-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943931 SAMN22908632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345213/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943932 SAMN22901988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345214/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.255 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943933 SAMN22901987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0345215/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.120 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943934 SAMN22904689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345219/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.406 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943935 SAMN22905548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0345221/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.434 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943936 SAMN22904690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345218/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.730 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943937 SAMN22904688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345223/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.817 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943938 SAMN22908631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345242/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.372 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943939 SAMN22904020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345244/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.865 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943940 SAMN22904019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345252/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.552 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943941 SAMN22906204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0345251/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.443 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943942 SAMN22903040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0345243/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.962 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943943 SAMN22906205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0345250/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.257 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943944 SAMN22904018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345259/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943945 SAMN22904017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345260/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.994 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943946 SAMN22904016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345261/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.542 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943947 SAMN22904015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345262/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.799 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.531 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943948 SAMN22904013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345265/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.661 lineage/clade name AY.46.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943949 SAMN22904012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345266/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943950 SAMN22904011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345268/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.596 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943951 SAMN22904014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345263/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.531 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943952 SAMN22906203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0345269/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943953 SAMN22904010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0345271/2021 collected_by Laboratory Corporation of America collection_date 2021-10-07 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.412 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.080 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943954 SAMN22900922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0345273/2021 collected_by Laboratory Corporation of America collection_date 2021-10-05 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.852 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943955 SAMN22904895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347368/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943956 SAMN22904579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347371/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.108 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943957 SAMN22904894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347370/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943958 SAMN22902153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347372/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943959 SAMN22901913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347373/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943960 SAMN22904893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347375/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.873 lineage/clade name AY.4.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943961 SAMN22904578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347374/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943962 SAMN22901912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347377/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.790 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943963 SAMN22901911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347379/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.098 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.648 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943964 SAMN22904891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347378/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943965 SAMN22904892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347376/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.093 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943966 SAMN22904577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347381/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.838 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943967 SAMN22901910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347380/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.970 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943968 SAMN22904576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347383/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.985 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943969 SAMN22901150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347385/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.813 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943970 SAMN22901151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347384/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.650 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943971 SAMN22901149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347386/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.229 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943972 SAMN22901146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347390/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.116 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943973 SAMN22901148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347387/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.048 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943974 SAMN22901147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0347388/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.689 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943975 SAMN22904890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347391/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.338 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943976 SAMN22904889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0347393/2021 collected_by Laboratory Corporation of America collection_date 2021-10-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.800 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943977 SAMN22901909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0347394/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 20.598 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943978 SAMN22904575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943979 SAMN22904573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943980 SAMN22904574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943981 SAMN22907091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.55 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.712 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943982 SAMN22907090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0347411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.56 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943983 SAMN22904572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943984 SAMN22902152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0347417/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.521 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943985 SAMN22904571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0347423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.707 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943986 SAMN22905490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0349395/2021 collected_by Laboratory Corporation of America collection_date 2021-10-17 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943987 SAMN22908471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0347427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943988 SAMN22904453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349396/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.528 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943989 SAMN22901857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349399/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943990 SAMN22901858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349398/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.444 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.826 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943991 SAMN22901856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349400/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.420 lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943992 SAMN22908316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349401/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.625 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943993 SAMN22904831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0349402/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.940 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943994 SAMN22904452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0349403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.041 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.931 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943995 SAMN22901094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349405/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.573 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943996 SAMN22901095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.991 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943997 SAMN22901093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349406/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.860 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943998 SAMN22905910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0349407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.897 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10943999 SAMN22906068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.949 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.855 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944000 SAMN22907826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.153 lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944001 SAMN22902828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0349413/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.884 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944002 SAMN22906067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944003 SAMN22901092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0349417/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.533 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944004 SAMN22906066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944005 SAMN22906765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0349419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944006 SAMN22906764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0349420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.368 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944007 SAMN22901855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349422/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944008 SAMN22901854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349423/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.434 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944009 SAMN22908315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.398 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944010 SAMN22908314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0349428/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944011 SAMN22901853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349424/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.655 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.077 lineage/clade name AY.46.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944012 SAMN22901852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0349425/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.178 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944013 SAMN22906065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349430/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944014 SAMN22906064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349431/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.138 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944015 SAMN22906063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0349432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944016 SAMN22907825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0349435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944017 SAMN22902089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349433/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944018 SAMN22908269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352490/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944019 SAMN22902088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0349434/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.683 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.221 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944020 SAMN22908268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352491/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944021 SAMN22908267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352492/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944022 SAMN22902048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0352496/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.427 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944023 SAMN22906038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352495/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.865 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944024 SAMN22907798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352497/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.977 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944025 SAMN22904422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352501/2021 collected_by Laboratory Corporation of America collection_date 2021-10-06 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.748 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.007 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944026 SAMN22906037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0352498/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.933 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944027 SAMN22907326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352503/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.700 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944028 SAMN22907327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352502/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.943 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944029 SAMN22907325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352504/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.259 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944030 SAMN22907324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0352505/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.587 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944031 SAMN22901046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352508/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944032 SAMN22901045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352509/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.245 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944033 SAMN22901044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352511/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.898 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944034 SAMN22907796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352514/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.180 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944035 SAMN22907797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0352512/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.748 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.924 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944036 SAMN22903474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0352515/2021 collected_by Laboratory Corporation of America collection_date 2021-10-09 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.257 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944037 SAMN22901043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352516/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.336 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944038 SAMN22901042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352517/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.664 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944039 SAMN22901794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352519/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.767 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944040 SAMN22904778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0352523/2021 collected_by Laboratory Corporation of America collection_date 2021-10-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944041 SAMN22904421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352524/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944042 SAMN22901793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352525/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.655 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.430 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944043 SAMN22901792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0352530/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944044 SAMN22904420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0352531/2021 collected_by Laboratory Corporation of America collection_date 2021-10-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.333 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944045 SAMN22906992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352534/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.446 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944046 SAMN22906993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352532/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.732 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944047 SAMN22906991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0352535/2021 collected_by Laboratory Corporation of America collection_date 2021-10-12 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.406 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944048 SAMN22901041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352537/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944049 SAMN22901040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0352538/2021 collected_by Laboratory Corporation of America collection_date 2021-10-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.333 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944050 SAMN22908266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0352541/2021 collected_by Laboratory Corporation of America collection_date 2021-10-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.747 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944051 SAMN22906127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345751/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.599 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944052 SAMN22907910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345750/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.227 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944053 SAMN22904669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0345755/2021 collected_by Laboratory Corporation of America collection_date 2021-10-18 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944054 SAMN22905023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345756/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.759 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944055 SAMN22905021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345758/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.389 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944056 SAMN22908592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345760/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944057 SAMN22905022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345757/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.115 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.310 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944058 SAMN22908593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944059 SAMN22907909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345764/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.949 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.971 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944060 SAMN22908591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.114 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944061 SAMN22902197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345770/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.197 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944062 SAMN22907908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345765/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.029 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944063 SAMN22902198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345769/2021 collected_by Laboratory Corporation of America collection_date 2021-10-19 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.985 lineage/clade name AY.39.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944064 SAMN22906844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0345772/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.439 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.849 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944065 SAMN22903708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0345771/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.354 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944066 SAMN22908716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345773/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.858 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.578 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.554 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944067 SAMN22908715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0345774/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.415 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944068 SAMN22901196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345778/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.859 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944069 SAMN22902196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345779/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.069 lineage/clade name AY.43 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944070 SAMN22901197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345776/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.981 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944071 SAMN22905019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345782/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944072 SAMN22905020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345781/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944073 SAMN22905018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0345783/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.117 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944074 SAMN22908590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345785/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.387 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.820 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944075 SAMN22908589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0345786/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.910 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944076 SAMN22902195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0345787/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944077 SAMN22902836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0345788/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.221 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944078 SAMN22907907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345789/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.392 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944079 SAMN22907906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0345790/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.651 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944080 SAMN22906126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345793/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.199 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944081 SAMN22906117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346403/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.101 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944082 SAMN22901195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0345795/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.103 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944083 SAMN22906125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0345794/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944084 SAMN22902172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346404/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.909 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944085 SAMN22904618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346405/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.365 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944086 SAMN22904981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346406/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.866 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944087 SAMN22904978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944088 SAMN22904979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.418 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944089 SAMN22904980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.672 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944090 SAMN22904977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0346410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.285 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944091 SAMN22908555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.509 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.716 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944092 SAMN22901953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944093 SAMN22904616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346414/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944094 SAMN22904617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346413/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.394 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944095 SAMN22904615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346415/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944096 SAMN22908554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346416/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944097 SAMN22901952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0346417/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.245 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944098 SAMN22904614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0346418/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.862 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944099 SAMN22908553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346419/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.264 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.090 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944100 SAMN22908552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346420/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944101 SAMN22908551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346421/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944102 SAMN22903691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0346425/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.107 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.210 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944103 SAMN22903674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0346426/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.657 lineage/clade name AY.44 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944104 SAMN22908550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346429/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.995 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944105 SAMN22908711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0346427/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.603 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944106 SAMN22902171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346424/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944107 SAMN22908549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0346430/2021 collected_by Laboratory Corporation of America collection_date 2021-10-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944108 SAMN22900734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0346434/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944109 SAMN22903660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0346432/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944110 SAMN22906116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0346435/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.339 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944111 SAMN22907116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0346438/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.141 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944112 SAMN22902170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0346437/2021 collected_by Laboratory Corporation of America collection_date 2021-10-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944113 SAMN22901179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346440/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.746 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10944114 SAMN22901180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0346439/2021 collected_by Laboratory Corporation of America collection_date 2021-10-20 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.627 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated